South Coast Of Portugal Research Articles

Local and temporal variations in near‐shore macrobenthic communities associated with submarine groundwater discharges

AbstractThe influence of submarine groundwater discharges (SGD) on the dynamics of coastal ecosystems is receiving increasing scientific attention, although our knowledge of this issue still remains insufficient. Understanding the ecological response of coastal ecosystems to SGD dynamics is important in order to evaluate and predict changes in coastal communities. The aim of the present study was to characterize the effect of groundwater discharge on subtidal soft‐bottom macrofaunal assemblages in the south coast of Portugal (Algarve) at different times of the year and under different discharge regimes. Sediment macrofauna was sampled twice per season in spring and summer 2011 in two locations: one under influence of SGD (Olhos de Água) and one not under that influence (Arrifes). The results showed that differences in community structure between locations occurred mainly during spring, when the magnitude of groundwater discharge was higher. Several individual taxa were strongly associated with the SGD, particularly during spring: the polychaete families Magelonidae and Oweniidae; the isopod Cyathura carinata; and the bivalves Tellimya ferruginosa and Tellina fabula. Some of these taxa are already considered indicators of SGD, whereas others merit further investigation. The average similarity among samples was consistently larger in the location with SGD and the average similarity between the two locations was generally higher during spring, indicating that SGD promote stability in macrobenthic communities across time and space. SGD were also associated with higher values of Chlorophyll a (Chl a), fine sediments and total abundance of organisms (particularly suspension feeders). This suggests that differences between locations are associated with SGD and mediated by nutrient fluxes and sediment transport, or their interaction.

Vertical and horizontal larval distribution of an offshore brachyuran crab, <em>Monodaeus couchii</em>, off the south coast of Portugal

A strong understanding of larval distribution and abundance is of major value in delineating the location and size of a breeding population of deep-sea species such as Monodaeus couchii . In this study, vertical distribution of the larvae of a brachyuran crab, M. couchii , was assessed during two week-long cruises conducted at the end of January 2006 and 2007 off the South Coast of Portugal. Larvae were collected by oblique plankton hauls with a Longhurst-Hardy Plankton Recorder from the surface to 300 m. Abundance and distribution of zoeae I and II were correlated during both years. For all stages, abundance decreased with depth during the day while it increased with depth at night; the larvae thus displayed reverse diel vertical migration. Abundance of zoeae I and II was correlated with chlorophyll a levels, whereas those of later stages were correlated with neither physical parameters (chlorophyll a , temperature or salinity) nor each other. An ontogenic shift in vertical distribution explained the results; earlier zoeal stages remain in the food-rich upper water column while later stages were not correlated with any physical parameters (i.e. chlorophyll a , salinity or temperature) and migrated to the bottom for settlement.

A system dynamics model to support the management of artisanal dredge fisheries in the south coast of Portugal

AbstractThis paper presents a management model developed to promote the sustainability of artisanal fisheries, considering socioeconomic and environmental dimensions. The management of artisanal fisheries faces many challenges, including the lack of appropriate tools to support policy makers and stakeholders in the decision‐making process. The model presented in this study is based on system dynamics and allows the simulation of the behavior of the artisanal dredge fishery on the south coast of Portugal, including four main species and two fleets. Two scenarios were simulated to assess the impact of regulatory measures on the system sustainability: scenario 1 simulated a permanent reduction of fishing effort, returning an improvement of biologic and economic sustainability; scenario 2 simulated the closure of one species for a period of one year to allow its recovery. It was found that although the revenue of fisheries decreases in that year, the system is able to return to the average levels of revenue three years after the closure. The study aimed to guide decision makers in the selection of the most appropriate measures toward the preservation of marine ecosystems and socioeconomic stability of fishing communities. The developed system dynamics model, combining available data with knowledge of fisheries experts, proved to be a useful scientific tool to identify management policies and organizational structures leading to greater success. This technique can be applied to the study of other fishery systems worldwide.

The spreading of the non-native caprellid (Crustacea: Amphipoda) Caprella scaura Templeton, 1836 into southern Europe and northern Africa: a complicated taxonomic history.

Caprella scaura, originally described by Templeton (1836) from Mauritius and later reported as several subspecies from numerous areas of the world, was found for the first time in the Mediterranean in 1994. Since this report, the species was found in several Mediterranean locations. To explore the current distribution of C. scaura in the Iberian Peninsula and adjacent areas, we surveyed marine fouling communities from 88 marinas along the whole Iberian Peninsula and North Africa, 3 from Italy, 1 from France, 1 from Malta and 1 from Greece between June 2011 and June 2012. The results of this survey report the first confirmed record of C. scaura in Corsica (France), Creta (Greece) and Morocco, and confirm an extensive distribution of C. scaura along the Spanish Mediterranean coast and the Strait of Gibraltar. The species was absent in the north Atlantic coast of Spain and the upper distribution limit in the eastern Atlantic coast is the locality of Cascais, in the south coast of Portugal. All populations studied belong to the same morphological form, with match with the subspecies C. scaura typica from Brazil and C. scaura scaura from Mauritius, suggesting that these two subspecies could correspond to the same “variety”.

Genotoxicity in two bivalve species from a coastal lagoon in the south of Portugal

DNA damage was evaluated by comet assay in the haemolymph of two bivalve species Ruditapes decussatus and Mytilus galloprovincialis from the Ria Formosa lagoon (south Coast of Portugal). Clams and mussels were sampled from sites close to each other to determine interspecific responses to similar environmental conditions, considering also seasonal and gender differences. Coupled with genotoxic effect, another damage biomarker (lipid peroxidation) was analysed to verify if the conditions that instigate DNA damage can be related with injury to cell membranes. For both species, DNA damage was low, reflecting the low levels of genotoxic contaminants in the lagoon, and no interspecific differences were found. However, seasonal differences were established for both bivalve species, reflecting higher environmental stress in summer. Regarding gender susceptibility, only clams showed differences in percentage of Tail DNA, with females more sensitive to DNA damage than males. Additionally, results for clams point out that factors responsible for LPO may not be the same as those causing genotoxicity. This study demonstrated that DNA damage is a sensitive biomarker to discriminate spatial, temporal and gender differences, being an appropriate biomarker for genotoxicity evaluation even in places of low contamination, such as the Ria Formosa lagoon.

The influence of submarine groundwater discharges on subtidal meiofauna assemblages in south Portugal (Algarve)

Submarine groundwater discharges (SGD) have been documented as contributing to the biological productivity of coastal areas, through a bottom-up support to higher trophic levels. Nevertheless, the effects on the bottom levels of the coastal food web, namely the meiofauna, are still very poorly known. The “Olhos de Água” beach is the only area on the South coast of Portugal where submarine freshwater seepages have been identified. In this study, meiofauna assemblages in the area impacted by SGD were compared with the meiofauna from a similar area, but without SGD. Samples were taken in Spring and Summer 2011, under different hydrological regimes, aquifer recharge (after Winter) and dryness (after Spring), respectively. The major changes in the community were recorded at a seasonal level, with higher abundances and number of taxa in Spring, when compared to Summer. This may be explained by better sediment aeration during spring along with higher food availability from the sedimentation of spring phytoplankton blooms. Although no significant differences were detected by multivariate analysis on the meiofauna abundances between Control and Impact areas, pair-wise tests on the interactions between factors in number of taxa (S) and species richness (Margalef's d) suggested that the discharge of groundwater stimulated an increase in meiofauna diversity. Such effect can be observed between the meiofauna assemblages from impacted and control areas and also between periods with different discharge regimes (Spring and Summer) in the impacted area. These findings highlight the role that freshwater discharges from coastal aquifers have on meiofauna assemblages and suggest that SGD contribute to enhance the transfer of energy from the lower levels of the trophic web to upper levels.

Economic base model for the Guadiana estuary, Portugal an application for Integrated Coastal Zone Management

The concept of base-multiplier analysis is that export activities constitute the economic base of a region, whereas the other economic activities that sell their goods and services to the local residents grow or shrink depending on the performance of the base activities. These concepts, with origins extending at least as far back as the early 1900s, have reached maturity and are widely applied. The attractiveness of an economic base model (EBM) draws in its simplicity in expressing the power of demand in regional income determination. Extensive literature has grown up around the economic base theory, however, systematic publications concerning empirical application are scarce and focus mostly on the socio-economic dimension of the analyzed system. Such territorially oriented economic models are useful in a variety of decision making procedures; preparation of annual budgets, short-run market demand forecasting, longer-term growth strategies. The purpose of this article is to present a practical application of EBM to the geographical area of the Guadiana Estuary, on the south coast of Portugal. The interest of the EBM application in this case study includes its integration in a broader project that applies a Systems Approach Framework (SAF) towards Integrated Coastal Zone Management (ICZM). There are three pillars of sustainability considered here: social, ecological and economic, hence, the article not only describes EBM application but also how it has been use to demonstrate a chain of events resulting from the interaction between the ecological and the socio-economic sub systems of the area. The results obtained will probably raise the usual criticism to which the economic base model has been exposed previously; however it provides unequivocal evidence that a truly interdisciplinary approach to a given territorial target can be successfully shared with end users and the research community.

Diversity and spatial distribution patterns of the soft-bottom macrofauna communities on the Portuguese continental shelf

This study presents a comprehensive assessment of the diversity and spatial distribution of the soft-bottom benthic macrofauna communities along the Portuguese continental shelf and discusses the relationship between biological and environmental data. A total of 145 sites were sampled using a 0.1m2 Smith–McIntyre grab covering the whole west and south coast of Portugal, at depths ranging 13 and 195m. More than 30,000 specimens were identified corresponding to 737 taxa, mostly annelids (43% of the total taxa). The most frequent species were Ampharete finmarchica, Ampelisca sp. and Lumbrineris lusitanica while the most abundant were Mediomastus fragilis, Polygordius appendiculatus and Ampharete finmarchica. Abundance ranged between 7 and 1307 specimens per 0.1m2 and alpha diversity reached a maximum of 96 taxa per 0.1m2. Gravel sediments, and shallow and sheltered areas presented higher diversity values than mud sediments and deeper sites. Six major benthic assemblages were identified: (a) Coarse sediments, mostly located on the western shelf, with Protodorvillea kefersteini, Pisione remota, Angulus pygmaeus and several other interstitial species; (b) near shore fine sands with Magelona johnstoni, Urothoe pulchella and Angulus fabula; (c) Abra alba community in northwestern deep muddy sands; (d) Southwestern very deep muddy sands characterized by Galathowenia oculata, Lumbrinerides amoureuxi and other burrowers and tubicolous polychaetes; (e) Euchone rubrocincta, Nematonereis unicornis and other warmer water species in muddy sands of the southern and sheltered shelf; and (f) muds dominated by Sternaspis scutata, Heteromastus filiformis and Psammogammarus caecus. Sediment grain-size, organic matter, depth and hydrodynamic regime were the variables best related to the macrofauna distribution patterns, highlighting the transitional characteristics of this northeastern Atlantic area, where northern and subtropical faunas can coexist.

Interspecific variability of endocrine disruption and oxidative stress in two bivalve species from the Ria Formosa Lagoon (south coast of Portugal)

Estuaries are highly productive ecosystems that have been increasingly affected by anthropogenic activities. In this study, the presence of endocrine disrupting compounds (EDCs) and their relation to oxidative stress were assessed in two bivalve species (mussels Mytilus galloprovincialis and clams Ruditapes decussatus ) from the Ria Formosa Lagoon (south Portugal). We applied the alkali-labile phosphate (ALP) assay to determine vitellogenin-like protein levels, and the lipid peroxidation (LPO) method to assess oxidative damage. Mussels and clams exhibited the same pattern of ALP concentrations, with no differences between genders and higher levels in winter. R. decussatus showed higher ALP values than M. galloprovincialis , possibly associated with a stronger responsiveness of clams to EDCs or due to the influence of the reproductive cycle. Mussels exhibited a more evident seasonal effect for LPO, indicating that these organisms are more influenced by seasonal fluctuations in the water column compared to the sediment-associated clams. Both species appear to be under the influence of EDC exposure (which could induce Vg-like protein synthesis) and oxidative stressors (leading to lipid peroxidation) in the Ria Formosa Lagoon, particularly in winter, reflecting the presence of different contaminants in Ria Formosa and environmental changes, as well as complex interactions between them.

Nutrients and particulate matter exchanges through the Ria Formosa coastal lagoon, Portugal

Cravo, A., Cardeira, S., Pereira, C., Rosa, M., Madureira, M., Rita, F., Luís, J. and Jacob, J., 2013. Nutrients and particulate matter exchanges through the Ria Formosa coastal lagoon.The Ria Formosa lagoon (south coast of Portugal) is a highly productive shallow mesotidal system of high water renewal through six permanent connections to the ocean. The three inlets in the western sector represent ~ 90% of the total tidal prism. To understand spatial and temporal dynamics of nutrients, chlorophyll a (proxy of phytoplankton) and particulate matter, data acquisition of these parameters along with current velocity was conducted hourly during two consecutive semi-diurnal spring and neap tidal cycles (~12.5 h) in the three inlets of Ria Formosa western sector, in late autumn of 2011. In all three inlets, nutrients ranges were typical for this time of the year, varying in antiphase relative to tidal signal, although less evident during the neap tide. Chlorophyll a and suspended solids concentrations were lower during the neap tidal cycle with less evident tidal variation than for nutrients. Net transport results show that Ria Formosa plays an important role in the mass export of nutrients to the adjacent coastal area, particularly during spring tides, with a greater contribution by the Faro-Olhão inlet, followed by the Armona and Ancão inlets. These two, regardless of the residual tidal prism, export nutrients while suspended solids were imported. The Faro-Olhão inlet presented different behaviour: it acts as a flood dominated inlet importing chlorophyll a and nitrate, and exporting ammonium and suspended solids. Nonetheless, values can change due to tidal variability, asymmetry and distortion, and interconnection of inlets inside the lagoon. To further understand the seasonal variation of this system more surveys will be conducted.

Faunal differences between the invasive brown macroalga Sargassum muticum and competing native macroalgae

Interactions between macroalgae and their associated fauna are of great interest for marine invasions, because fauna may increase the biotic resistance of a system and macroalgal invasions may cause shifts in faunal composition. We tested for differences in faunal community structure between a macroalgal invader, Sargassummuticum, and several native macroalgae in intertidal pools on both the west and south coast of Portugal. On each coast, we compared the faunal diversity and composition associated with the invader with that of the competing native macroalga(e). On the west coast, the diversity of the fauna associated with S. muticum was equal to or lower than with the native competitor, Cystoseira humilis. Fauna composition differed between S. muticum and C. humilis at both locations, but within each species, no differences between locations were detected. In contrast, the fauna diversity on S. muticum of the south coast varied among locations. S. muticum fauna differed from the fauna of all native macroalgae at one location, but only from three out of seven native macroalgae at the other location. Discriminating fauna species did not show a consistent pattern towards higher or lower abundances in S. muticum compared to most native macroalgae, and species-specific contributions were small. Differences in fauna community also depended on the identity of the native macroalga. In conclusion, the fauna associated with S. muticum differs from many native brown macroalgae, but these differences were not consistent as they depend both on the native macroalgal species and on location. This invader does not seem to have a severe negative impact on local macroalgae-associated fauna.

Microbiological monitoring of bivalves from the Ria Formosa Lagoon (south coast of Portugal): A 20 years of sanitary survey

The microbiological pollution of coastal waters is a major problem, especially in shellfish areas. This article shows the faecal contamination in bivalves from the Ria Formosa Lagoon (south coast of Portugal) along 20years (1990–2009). The highest values of Escherichia coli in bivalves were obtained during the 90s, related with the discharge of untreated wastewaters and agricultural runoff. In the 2000s contamination levels decreased, with 83% of the population already served by new or remodelled sewage treatment plants. The highest levels were found in bivalves close to the largest city, where punctual and diffuse contamination sources still exist. Bivalves from the less impacted site showed the lowest contamination, an area with more water renewal. Seasonally, the highest levels were in autumn and winter, due to the runoff of waters from rainfall. These were opposite to those in spring and summer, when the highest temperatures and salinity showed a bactericidal effect.

Responses of CYP450 dependent system to aliphatic and aromatic hydrocarbons body burden in transplanted mussels from South coast of Portugal

Mussels Mytilus galloprovincialis were cross-transplanted at South Portugal from a reference site (site 1) to a site more contaminated with hydrocarbon compounds (site 2), and vice versa, in an active biomonitoring (ABM) concept, to assess the biotransformation capacity catalyzed by the mixed function oxygenase (MFO) system. Total alkanes (TAlk), the unresolved complex mixture (UCM), and total polycyclic aromatic hydrocarbons (TPAHs) concentration increased respectively 6, 4.4 and 4.2 fold relatively to control, in mussels transplanted from site 1 to 2. In the cross-transplant, a 48, 57 and 62% depuration of TAlk, UCM and TPAHs concentrations occurred by the end of the 3-4th week. Petrogenic and biogenic (marine and terrigenous) sources of AHs, and petrogenic and pyrolitic (biomass and oil/fuel incomplete combustion) sources of PAHs were detected at both sites. CYP450, CYT b (5) and NADPH-RED in mussels transplanted from site 1 to 2 were induced from day 0 to 28, with a total increase of 35, 32 and 35%, respectively, while biochemical equilibrium to lesser environmental contamination occurs in mussels transplanted from site 2 to 1. A significant relationship between CYP450 and NADPH-RED was found with TPAH, with distinctive behavior at the two sites. MFO system components increase with exposure time at one site and decreases in the other, reflecting an adaptation to distinct environmental hydrocarbon loads. The ABM strategy proved to be useful to understand the environment real impact on the biochemical responses in mussels' local populations. In this study, CYP450 and NADPH-RED are a useful biomarker for hydrocarbon exposure.

Diet of the blue marlin, Makaira nigricans, off the south coast of Portugal

The blue marlin, Makaira nigricans (Istiophoridae), is a large, top predator with a worldwide distribution whose feeding ecology is still unknown in the northeast Atlantic. The stomach contents of 24 Atlantic blue marlin, caught by the Big Game fishing fleet (between 2007 and 2010) off the south coast of Portugal, were studied. All marlin fed exclusively on pelagic fish, with a total of 180 prey items recorded, belonging to 6 identified species. The most important family in the blue marlin diet was Scombridae, representing 70% of the total prey items. Among the Scombridae, the chub mackerel, Scomber colias, was the most important prey species (47.9% by weight, 51.1% by number, 58.3% by frequency of occurrence). The length of prey found in the stomachs ranged from 136 to 727 mm in length, and a significant positive correlation was found between prey and blue marlin size. Our results suggest that in this geographical area (NE Atlantic) marlin feed on a small spectrum of species, with a preference for foraging on seamounts.

A multibiomarker approach in the clam Ruditapes decussatus to assess the impact of pollution in the Ria Formosa lagoon, South Coast of Portugal

The Ria Formosa lagoon is an ecosystem whose water quality reflects the anthropogenic influence upon the surrounding areas. In this lagoon, the clam Ruditapes decussatus has a great economical importance and has been widely used as a biomonitor. A multibiomarker approach (δ-aminolevulinic acid dehydratase, metallothionein, lipid peroxidation, acetylcholinesterase, alkali-labile phosphates, DNA damage) was applied to assess the environmental quality of this ecosystem and the accumulation of contaminants and their potential adverse effects on clams. Clams were sampled in different shellfish beds in the period between July 2007 and December 2008 and abiotic parameters (temperature, salinity, pH and dissolved oxygen of seawater and organic matter in the sediment), condition index, metals (Cd, Cu, Zn, Ni, Pb), TBTs and PAHs concentrations were measured in clam tissues. Data was integrated using Principal Component Analyses and biomarker indices: IBR (Integrated Biomarker Response) and HSI (Health Status Index). This multibiomarker approach enabled discrimination of a time and space trend between sites with different degrees of anthropogenic contamination, identifying one of them (site 2) as the most stressful and summer months as the most critical period for clams due to an increase of environmental stress (anthropogenic pressure along with extreme environmental conditions, e.g. temperature, dissolved oxygen, organic matter in the sediments, etc). The selected biomarkers provided an integrated response to assess the environmental quality of the system, proving to be a useful approach when complex mixtures of contaminants occur.

DNA damage as a biomarker of genotoxic contamination in Mytilus galloprovincialis from the south coast of Portugal

DNA damage was evaluated in the haemolymph of Mytilus galloprovincialis from nine sites along the south coast of Portugal using the comet assay. DNA damage was low, in the same range of sites considered to suffer low impact from genotoxic contaminants. Even so, differences between sites, seasons and genders were found. Highest values were in mussels from the main estuaries and the fishery harbour, reflecting higher genotoxin levels, whereas the lowest values can be used as a baseline for future work. Non-contaminant related factors (e.g. temperature and oxygen) were also shown to influence DNA damage. Between seasons, highest values were in summer related not only to the increase of tourism in this region (∼10-fold), but also to temperature. Between genders, males were found to be more sensitive. The condition index was also generally higher in summer. Lipid peroxidation, another damage biomarker, was measured in gills to assess if there is any association between the responses of both biomarkers and if they are similarly affected by the same environmental conditions. LPO like DNA damage was higher in summer. This work confirms that DNA damage is a sensitive biomarker to discriminate genotoxic contamination, even in areas considered to suffer low impact from genotoxins.

First record of Ocinebrina nicolai (Mollusca: Gastropoda: Muricidae: Ocenebrinae) in north-eastern Atlantic waters

Ocinebrina nicolai Monterosato, 1884 a marine mollusc belonging to the Muricidae family is reported from Algarve, south coast of Portugal for the first time and is a new record for the biodiversity of the Portuguese malacological fauna and north-eastern Atlantic waters. This species with a medium-size shell for the genus (14–16 mm) was initially sampled during a baseline project that studied marine biotopes in the central Algarve region. This short note presents a brief diagnosis of the species, provides local information on geographical distribution, habitat, and compares it with other congeneric species found in Portugal: Ocinebrina aciculata (Lamarck, 1822) and Ocinebrina edwardsii (Payraudeau, 1826).

Technical and economic efficiency analysis of the Portuguese artisanal dredge fleet

AbstractOliveira, M. M., Camanho, A. S., and Gaspar, M. B. 2010. Technical and economic efficiency analysis of the Portuguese artisanal dredge fleet. – ICES Journal of Marine Science, 67: 1811–1821. An efficiency analysis of the commercial dredge fleet operating along the south coast of Portugal between 2005 and 2007 sought to determine the efficiency of the vessels using data envelopment analysis models, considering fixed inputs (vessel power, length, tonnage, and an indicator of stock biomass) and a variable input (number of days at sea). The annual quota per vessel was also included in the model as a contextual factor. In the technical-efficiency (TE) analysis, outputs were defined by the catch weight for each of the three target species (bivalves). Using price data for each species in the wholesale market, revenue efficiency was also estimated to complement the TE analysis. The advantage of the approach lies in the ability to separate technical aspects from allocative aspects in the efficiency assessment, allowing two-dimensional graphic representation of vessel performance. The procedure allows the identification of benchmark vessels, which maximized the catch weight of the species landed, given their inputs, as well as the vessels that selected the appropriate target species to maximize the revenue of the fishing activity, given output prices. The approach also allowed the specification of targets for inefficient vessels that correspond to the catch by species, permitting revenue maximization from fishing.

Age and growth, mortality and reproduction of the striped sea bream, Lithognathus mormyrus Linnaeus 1758, from the south coast of Portugal (Algarve)

The striped sea bream, Lithognathus mormyrus, used for this population dynamics study were obtained from longline catches and market sampling in the Algarve (south Portugal). The macroscopic analysis of the gonads and the gonad somatic index showed that the south Portuguese population of L. mormyrus spawns mainly between late spring and summer (June to August). The length at first maturity was similar for males and females and the value for both sexes combined was estimated to be 16.08 cm, corresponding to an age between 1 and 2 years. Fish age classes (0 to 13) were determined by reading growth rings on whole otoliths. Age determination was validated by marginal increment analysis. The estimated parameters of the von Bertalanffy growth equation were L∞=35.30 cm, K=0.264 and t 0= − 0.809. Mortality rates were calculated for fish captured with longlines, and the estimated parameters were M=0.356, Z=0.622 and F=0.266. From an Algarve fishery management perspective, these results suggest the need for an increase in the minimum landing size (from 15 to 17 cm), which should be beneficial for the sustainability and conservation of this species. The results also showed that fishing with longlines off the Algarve coast may allow for a sustainable use of the resource.

The yield of microphytobenthic chlorophyll from nutrients: Enriched experiments in microcosms

The yield of phytoplankton chlorophyll from nitrogen is a useful parameter in the study of eutrophication of coastal waters, providing the link between chlorophyll formation and nutrient consumption. This parameter has been estimated for microphytobenthos from Ria Formosa lagoon on the south coast of Portugal with a series of three experiments conducted in May and September 2007. Six sediment cores were collected from Ria Formosa in acrylic cylinders and cork stoppers were placed in the bottom. Water samples were collected in large containers and prepared (filtered and enriched) to be pumped to the top of the sediment inside the acrylic cylinders, which are the microcosms of the experiments. Microcosms were isolated to avoid water exchanges and placed in large tanks full of water to maintain temperature stability. Experiments were run for 5 to 9 days in a continuous diluted nutrient enriched system. One of the experiments was carried out with half the microcosms in the dark to evaluate the nutrient fluxes between the sediment and the water column, when no algal growth is expected. Nutrient fluxes of muddy sediments, during the two last days of the experiment in the dark were estimated to be 0.1015 μmol cm − 2 d − 1 for nitrogen, − 0.0015 μmol cm − 2 d − 1 for phosphorus, and 0.1395 μmol cm − 2 d − 1 for silicon. The yield of chlorophyll was determined to be between 3.65 and 4.11 μg chl (μmol N) − 1 from nitrogen and between 4.03 and 4.77 μg chl (μmol Si) − 1 for silicon in muddy sediments. It was not possible to determine the yield from phosphorus. These values are higher than for phytoplankton which may be due to physiological reasons, or due to the presence of a smaller fraction of microheterotrophs, which would divert nutrients. For sand, smaller yields were obtained but it is likely that this was mainly due to the fact that the values of the sediment fluxes used were the ones obtained for mud, which are higher than they should be for sand. This extra input of nutrients is considered to be taken up by algae, thereby decreasing the value of the yield. Therefore, reliable chlorophyll yield estimates for sand could not be obtained.