Source-sink Dynamics Research Articles

Changes in CO2 concentration and degassing of eutrophic urban lakes associated with algal growth and decline

Urban lakes are numerous in the world, but their role in carbon storage and emission is not well understood. This study aimed to answer the critical questions: How does algal growing season influence carbon dioxide concentration (cCO2) and exchange flux (FCO2) in eutrophic urban lakes? We investigated trophic state, seasonality of algal productivity, and their association with CO2 dynamics in four urban lakes in Central China. We found that these lightly-to moderately-eutrophic urban lakes showed a shifting pattern of CO2 source-sink dynamics. In the non-algal bloom phase, the moderately-eutrophic lakes outgassed on average of 12.18 ± 24.37 mmol m−2 d−1 CO2; but, during the algal bloom phase, the lakes sequestered an average 1.07 ± 6.22 mmol m−2 d−1 CO2. The lightly-eutrophic lakes exhibited lower CO2 emission in the algal bloom (0.60 ± 10.24 mmol m−2 d−1) compared to the non-algal bloom (3.84 ± 12.38 mmol m−2 d−1). Biological factors such as Chl-a (chlorophyll a) and AOU (apparent oxygen utilization), were found to be important factors to potentially affect the shifting pattern of lake CO2 source-sink dynamics in moderately-eutrophic lakes, explaining 48% and 34% of the CO2 variation in the non-algal and algal bloom phases, respectively. Moreover, CO2 showed positive correlations with AOU, and negative correlations with Chl-a in both phases. In the lightly-eutrophic lakes, biological factors explained a higher proportion of CO2 variations (29%) in the non-algal bloom phase, with AOU accounting for 19%. Our results indicate that algal growth and decline phases largely affect dissolved CO2 level and exchange flux by regulating in-lake respiration and photosynthesis. Based on the findings, we conclude that shallow urban lakes can act as both sources and sinks of CO2, with algal growth seasonality and trophic state playing pivotal roles in controlling their carbon dynamics.

Metaphyton contributes to open water phytoplankton diversity

In contrast to pelagic and benthic realms of the aquatic ecosystems, studies on the metaphytic habitats remain underrepresented in the literature. However, this realm may have a potential impact on composition and diversity of the open water assemblages through metacommunity processes (source-sink dynamics, mass-effect) especially in small ponds with extended littoral zone. Using a limnocorral experiment we studied how metaphyton affects diversity and composition of open water phytoplankton in a small eutrophic pond in the vegetation period. The three habitats (metaphyton, isolated and non-isolated open water) showed considerable differences in their taxa and functional group composition. Abundance-based diversity measures did not reveal remarkable differences among the assemblages of the three habitats. However, taxonomic and functional richness of the metaphyton and the non-isolated part of the pelagial significantly exceeded that of the limnocorral. Incidence-based similarity index values also showed closer resemblance of the metaphyton and plankton samples compared to that of the limnocorral. In the case of several functional groups, their functional redundancy in the metaphyton exceeded that in the open water areas. These results suggest that the metaphyton provides a refuge for several euplanktic elements that survive in the littoral and occasionally enrich the phytoplankton of the open water areas, representing that a within–lake metacommunity processes shape the composition and functioning of the open water areas in standing waters.

Recruitment and migration patterns reveal a key role for seed banks in the meta-population dynamics of an aquatic plant

Progressive habitat fragmentation threatens plant species with narrow habitat requirements. While local environmental conditions define population growth rates and recruitment success at the patch level, dispersal is critical for population viability at the landscape scale. Identifying the dynamics of plant meta-populations is often confounded by the uncertainty about soil-stored population compartments. We combined a landscape-scale assessment of an amphibious plant’s population structure with measurements of dispersal complexity in time to track dispersal and putative shifts in functional connectivity. Using 13 microsatellite markers, we analyzed the genetic structure of extant Oenanthe aquatica populations and their soil seed banks in a kettle hole system to uncover hidden connectivity among populations in time and space. Considerable spatial genetic structure and isolation-by-distance suggest limited gene flow between sites. Spatial isolation and patch size showed minor effects on genetic diversity. Genetic similarity found among extant populations and their seed banks suggests increased local recruitment, despite some evidence of migration and recent colonization. Results indicate stepping-stone dispersal across adjacent populations. Among permanent and ephemeral demes the resulting meta-population demography could be determined by source-sink dynamics. Overall, these spatiotemporal connectivity patterns support mainland-island dynamics in our system, highlighting the importance of persistent seed banks as enduring sources of genetic diversity.

Source-sink dynamics on networks: Persistence and extinction

Dynamics of populations with logistic growth leads to global persistence on arbitrary networks, whereas bistable dynamics is always associated with local extinction. In this paper we study a reaction-diffusion model on networks with a combination of both logistic and bistable reactions. We analyze a system of source-sink dynamics on networks with migration survival probabilities and derive conditions for strong persistence or local extinction. We show how the persistence or extinction of small populations depend on the diffusion strength, migration survival probability, network structure, and the sum and distribution of per capita growth rates.

Sources of coaster brook trout (Salvelinus fontinalis) revealed by genomic analysis of brook trout populations along Minnesota’s shoreline with Lake Superior

Knowledge of population-level relationships and how these relationships pertain to different life history forms is critical to developing effective management plans for native trout, char, and salmon. In the Lake Superior basin, identifying effective restoration strategies for coaster brook trout (Salvelinus fontinalis), a lake-inhabiting form of brook trout, is hampered by limited information on genetic connectivity and source-sink dynamics among brook trout populations. Here, we infer these relationships by surveying 8,178 single nucleotide polymorphisms in 234 brook trout from seven rivers along the Minnesota shoreline with Lake Superior, including from reaches above and below natural waterfalls that prevent upstream movement. We identified well-differentiated above-barrier populations that supply brook trout to below-barrier reaches. We also compared within-river brook trout to 26 coaster brook trout from Lake Superior. We identified at least four source populations for these coaster brook trout, three of which were located within rivers. Additionally, we estimated NE for within-river populations and detected a decline across recent generations, with the most recent estimates approaching critical thresholds. Finally, comparisons with 94 domestic brook trout representing nine hatchery strains revealed a lack of domestic introgression into wild populations, demonstrating the importance of natural reproduction to population persistence. Our results offer novel insights into sources of coaster brook trout and highlight the role of within-river populations in supporting the coaster life history. Management efforts focused on instream restoration may be more important to rehabilitating coaster brook trout than previously thought and are urgently needed given the population-level conservation status reported here.

Genetic diversity, gene flow, and source-sink dynamics of cougars in the Pacific Northwest

Genetic diversity, gene flow, and source-sink dynamics of cougars in the Pacific Northwest

Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern

The Alpha, Beta, and Gamma SARS-CoV-2 variants of concern (VOCs) co-circulated globally during 2020 and 2021, fueling waves of infections. They were displaced by Delta during a third wave worldwide in 2021, which, in turn, was displaced by Omicron in late 2021. In this study, we use phylogenetic and phylogeographic methods to reconstruct the dispersal patterns of VOCs worldwide. We find that source-sink dynamics varied substantially by VOC and identify countries that acted as global and regional hubs of dissemination. We demonstrate the declining role of presumed origin countries of VOCs in their global dispersal, estimating that India contributed <15% of Delta exports and South Africa <1%-2% of Omicron dispersal. We estimate that >80 countries had received introductions of Omicron within 100days of its emergence, associated with accelerated passenger air travel and higher transmissibility. Our study highlights the rapid dispersal of highly transmissible variants, with implications for genomic surveillance along the hierarchical airline network.

Impact of Iron Mining Activity on the Endophytic Fungal Community of Aspilia grazielae.

Aspilia grazielae (J. U. Santos) is an endemic plant species in Morro do Urucum in the Pantanal wetland (Brazil). A. grazielae is used for the restoration of areas impacted by iron mining activities. This study evaluates the diversity (composition, value and abundance) of endophytic fungal communities, considering parts of the plant and soil condition. The leaves and roots of A. grazielae were collected from native vegetation areas (NVA) and recovery areas (RCA) in Morro do Urucum. Illumina sequencing technology was used to investigate variation in endophytic fungal biodiversity. The operational taxonomic units detected in NVA ranged from 183 to 263 (leaf) and 115 to 285 (root), while RCA samples ranged from 200 to 282 (leaf) and 156 to 348 (root). Ascomycota phylum was the most common species among all plant samples. The most significant classes identified were Lecanoromycetes and Dothideomycetes that differed significantly (p ≤ 0.05) according to their plant hosts and soil stress. The relative abundance of Pestalotiopsis (Sordariomycetes class) and Stereocaulon (Lecanoromycetes class) genera was influenced by the iron mining activities according to the leaf samples analysed. However, the abundance and wealth of endophytic fungal communities in A. grazielae from RCA were evidence that could explain their high resilience to environmental disturbances and the source-sink dynamics of fungal propagules.

The Changjiang River plume shifts from carbon source to sink when net community production exceeds a threshold in early autumn

Estuaries are crucial components of the global ocean carbon cycle due to their high productivity. However, our understanding of the carbon source-sink dynamics at the air-sea interface of estuaries is incomplete, largely due to the rapidly changing environmental conditions. To address this, we conducted a study in early autumn 2016 using high-resolution biogeochemical data collected through buoy observations in the Changjiang River plume (CRP). Using a mass balance approach, we examined the factors driving changes in the sea surface partial pressure of carbon dioxide (pCO2) and quantified the net community production (NCP) in the mixed layer. We also explored the relationship between NCP and the carbon source-sink dynamics at the air-sea interface. Our results revealed that biological activities (64.0 %) and seawater mixing (19.7 %, including lateral transport and vertical mixing) were the dominant factors controlling changes in sea surface pCO2 during the study period. Moreover, NCP in the mixed layer was affected by factors such as light availability and the presence of respired organic carbon associated with vertical mixing of seawater. Notably, we observed a strong correlation between NCP and the difference in pCO2 between air and sea (δpCO2), with a threshold NCP value of 308.4 mmol m−2 d−1 identified as an indicator of the transition from a CO2 source to a sink in the CRP. Hence, we suggest that the NCP in a specific ocean box has a threshold, beyond which the air-sea interface in estuaries will change from a carbon source to a carbon sink, and vice versa.

Otolith elemental fingerprints reveal source-sink dynamics between two Greenland halibut nurseries in the St. Lawrence Estuary and Gulf

In fisheries science, it is important to understand the population dynamics of commercial species and also their movements from the nursery to the population, especially for juvenile individuals, to avoid overfishing. To determine their migration patterns among nurseries, we collected juvenile Greenland halibut Reinhardtius hippoglossoides from 2 nurseries inside our study area, the Estuary and Gulf of St. Lawrence, in the summer of 2016. We measured the concentrations of chemical elements in their otoliths along a margin-core transect and used the margin elemental fingerprints of Mg, Mn, Sr, and Ba to infer migratory behaviour between 2 sample sites, the Estuary and North Anticosti nurseries. Using a random-forest analysis, we achieved an overall reclassification success of margin elemental fingerprints to their capture site of 77%. Most fish sampled from both sample sites originated from the estuary (82.5%), suggesting an important asymmetry in the source-sink dynamics between these nurseries. Juvenile Greenland halibut migrate towards the North Anticosti nursery at a smaller-than-expected size (approximately 26 cm) corresponding to 2.5-3 yr old fish. Despite sexual dimorphism in growth, sex does not affect migratory behaviour or timing of migration before sexual maturation. Our study highlights the recruitment dynamics of Greenland halibut and confirms the estuary as the main nursery in the St. Lawrence system.

Stowaways: Maritime ecology of the oldest commensal ship rats (Rattus rattus) found on a Mediterranean shipwreck

Ship rats (Rattus rattus) have successfully colonized six continents and 80% of islands worldwide by stowing-away on anthropogenic vessels. Numerous zooarchaeological and metagenomic studies have contributed to tracing the western dispersal of ship rats out of the Indian subcontinent and into the Mediterranean Basin, North Africa, and Europe. This has increased understanding of historical maritime mobility, trade contacts, and the spread of pandemic disease such as the plague. Moreover, considerable research has been conducted on the behavior, ecology, and population dynamics of ship rats in invaded areas, which supports conservation and eradication efforts. However, few studies have shed light on the mode of travel in between the geographic origins and destinations of ship rats, such as ships and boats, which act as mobile, commensal habitat for this cosmopolitan species. We address this lacuna here, by analyzing an assemblage of ship rat remains from an early Islamic period shipwreck, the Ma‘agan Mikhael B, located on the Carmel coast of modern Israel. Using zooarchaeological, biometrical, and palaeogenetic (aDNA) methodologies, we investigated the maritime ecology of ship rats regarding dispersal behavior, habitat selection, source–sink dynamics, and relative body size. The results of this study suggest that ship rats actively inhabited the Ma‘agan Mikhael B as part of their habitat selection processes, that conditions onboard provided high-quality habitat (adequate food and harborage, likely absence of predators and disease), and that they appear to have exhibited a degree of gigantism, possibly due to ‘island rule’. This study has implications for future metapopulation genetic studies on ship rats, as well as shows the value of zooarchaeological analysis in understanding the ecological circumstances of the maritime mobility of ship rats in the Mediterranean region.

Analysis of durum wheat photosynthetic organs during grain filling reveals the ear as a water stress-tolerant organ and the peduncle as the largest pool of primary metabolites

Main conclusionThe pool of carbon- and nitrogen-rich metabolites is quantitatively relevant in non-foliar photosynthetic organs during grain filling, which have a better response to water limitation than flag leaves.The response of durum wheat to contrasting water regimes has been extensively studied at leaf and agronomic level in previous studies, but the water stress effects on source–sink dynamics, particularly non-foliar photosynthetic organs, is more limited. Our study aims to investigate the response of different photosynthetic organs to water stress and to quantify the pool of carbon and nitrogen metabolites available for grain filling. Five durum wheat varieties were grown in field trials in the Spanish region of Castile and León under irrigated and rainfed conditions. Water stress led to a significant decrease in yield, biomass, and carbon and nitrogen assimilation, improved water use efficiency, and modified grain quality traits in the five varieties. The pool of carbon (glucose, glucose-6-phosphate, fructose, sucrose, starch, and malate) and nitrogen (glutamate, amino acids, proteins and chlorophylls) metabolites in leaf blades and sheaths, peduncles, awns, glumes and lemmas were also analysed. The results showed that the metabolism of the blades and peduncles was the most susceptible to water stress, while ear metabolism showed higher stability, particularly at mid-grain filling. Interestingly, the total metabolite content per organ highlighted that a large source of nutrients, which may be directly involved in grain filling, are found outside the blades, with the peduncles being quantitatively the most relevant. We conclude that yield improvements in our Mediterranean agro-ecosystem are highly linked to the success of shoots in producing ears and a higher number of grains, while grain filling is highly dependent on the capacity of non-foliar organs to fix CO2 and N. The ear organs show higher stress resilience than other organs, which deserves our attention in future breeding programmes.

Habitat fragmentation reduces survival and drives source-sink dynamics for a large carnivore.

Rigorous understanding of how environmental conditions impact population dynamics is essential for species conservation, especially in mixed-use landscapes where source-sink dynamics may be at play. Conservation of large carnivore populations in fragmented, human-dominated landscapes is critical for their long-term persistence. However, living in human-dominated landscapes comes with myriad costs, including direct anthropogenic mortality and sublethal energetic costs. How these costs impact individual fitness and population dynamics are not fully understood, partly due to the difficulty in collecting long-term demographic data for these species. Here, we analyzed an 11-year dataset on puma (Puma concolor) space use, mortality, and reproduction in the Santa Cruz Mountains, California, USA, to quantify how living in a fragmented landscape impacts individual survival and population dynamics. Long-term exposure to housing density drove mortality risk for female pumas, resulting in an 18-percentage-point reduction in annual survival for females in exurban versus remote areas. While the overall population growth rate appeared stable, reduced female survival in more developed areas resulted in source-sink dynamics across the study area, with 42.1% of the Santa Cruz Mountains exhibiting estimated population growth rates <1. Since habitat selection is often used as a proxy for habitat quality, we also assessed whether puma habitat selection predicted source and sink areas. Patterns of daytime puma habitat selection predicted source areas, while time-of-day-independent habitat selection performed less well as a proxy. These results illuminate the individual- and population-level consequences of habitat fragmentation for large carnivores, illustrating that habitat fragmentation can produce source-sink dynamics that may not be apparent from other metrics of habitat quality. Locally, conserving high-quality source habitat within the Santa Cruz Mountains is necessary to support long-term puma population persistence. More broadly, source-sink dynamics may at play for other carnivore populations in similar fragmented systems, and linking landscape conditions to population dynamics is essential for effective conservation. Caution should be used in inferring habitat quality from habitat selection alone, but these results shed light on metrics of selection that may be better or worse proxies to identify source areas for large carnivores.

Whole-soil warming shifts species composition without affecting diversity, biomass and productivity of the plant community in an alpine meadow.

The structure and function of plant communities in alpine meadow ecosystems are potentially susceptible to climate warming. Here, we utilized a unique field manipulation experiment in an alpine meadow on the Qinghai-Tibetan Plateau and investigated the responses of plant species diversity, composition, biomass, and net primary productivity (NPP) at both community and functional group levels to whole-soil-profile warming (3-4 °C across 0-100cm) during 2018-2021. Plant species diversity, biomass and NPP (both above- and belowground) at the community level showed remarkable resistance to warming. However, plant community composition gradually shifted over time. Over the whole experimental warming period, aboveground biomass of legumes significantly decreased by 45%. Conversely, warming significantly stimulated aboveground biomass of forbs by 84%, likely because of better growth and competitive advantages from the warming-induced stimulation of soil water and other variables. However, warming showed minor effects on aboveground biomass of grasses and sedges. Overall, we emphasize that experimental warming may significantly affect plant community composition in a short term by triggering adjustments in plant interspecific competition or survival strategies, which may cause potential changes in plant productivity over a more extended period and lead to changes in carbon source-sink dynamics in the alpine meadow ecosystem.

Source-sink dynamics within a complex life history.

Source-sink patch dynamics occur when movement from sources stabilizes sinks by compensating for low local vital rates. The mechanisms underlying source-sink dynamics may be complicated in species that undergo transitions between discrete life stages, particularly when stages have overlapping habitat requirements and similar movement abilities. In these species, for example, the demographic effects of movement by one stage may augment or offset the effects of movement by another stage. We used a stream salamander system to investigate patch dynamics within this form of complex life history. Specifically, we tested the hypothesis that the salamander Gyrinophilus porphyriticus experiences source-sink dynamics in riffles and pools, the dominant geomorphic patch types in headwater streams. We estimated stage-specific survival probabilities in riffles and pools and stage-specific movement probabilities between the two patch types using 8 years of capture-recapture data on 4491 individuals, including premetamorphic larvae and postmetamorphic adults. We then incorporated survival and movement probabilities into a stage-structured, two-patch model to determine the demographic interactions between riffles and pools. Monthly survival probabilities of both stages were higher in pools than in riffles. Larvae were more likely to move from riffles to pools, but adults were more likely to move from pools to riffles, despite experiencing much lower survival in riffles. In simulations, eliminating interpatch movements by both stages indicated that riffles are sinks that rely on immigration from pools for stability. Allowing only larvae to move stabilized both patch types, but allowing only adults to move destabilized pools due to the demographic cost of adult emigration. These results indicated that larval movement not only stabilizes riffles, but also offsets the destabilizing effects of maladaptive adult movement. Similar patch dynamics may emerge in any structured population in which movement and local vital rates differ by age, size, or stage. Addressing these forms of internal demographic structure in patch dynamics analyses will help to refine and advance general understanding of spatial ecology.

Effect of external and internal loading on source-sink phosphorus dynamics of river sediment amended with iron-rich glauconite sand

Glauconite sands (GS) are abundantly available iron (Fe)-rich minerals that are efficient in lowering the release of phosphorus (P) from sediments to the overlying water. Many river sediments are, however, net sinks for P rather than sources and it is unclear if these GS minerals also enhance the P uptake from water. This is because the concentration of Fe(III) minerals at the sediment-water interface (SWI) depends on the redox potential that is affected by physicochemical processes. This study was set-up to investigate if a sediment amendment with GS can both lower P release from the sediment and enhance P uptake from the overlying water. The P fluxes across the SWI were compared between GS-amended (added at 10% weight fraction) and non-amended river sediment in static (incubation) and dynamic (flume) systems. The net P uptake was measured in response to a pulse external P loading (0.5–5 mg P L−1). Sodium glutamate was added to all treatments to simulate water with a high oxygen demand. Before the P pulse, the GS-amended sediments released significantly less P to the overlying water than the non-amended sediments in both static as dynamic systems. Spiking the water reverted the net P flux over the SWI only in the dynamic system, and the net P uptake in the sediment was factor two larger in GS-amended sediment compared to the non-amended sediment. This study showed that GS addition not only reduced internal P release, but also enhanced P uptake from the overlying water. However, the long-term efficiency in streams likely decreases over time due to saturation processes.

Immigration drives ship rat population irruptions in marginal high‐elevation habitat in response to pulsed resources

AbstractPest animal populations, such as rodents, often irrupt in response to pulsed resources. However, few studies have considered how understanding the propagation of irruptions across landscapes could lead to more efficient pest suppression. Resource pulses might create temporary source–sink dynamics in heterogeneous environments, whereby reservoirs of animals living in high‐quality habitat increase and spill over into more marginal habitat. Low‐density populations in marginal habitat could also increase through in situ breeding by residents in response to increased food availability. Understanding the relative importance of these two nonmutually exclusive processes is important as pest outbreaks could potentially be more efficiently controlled by targeting source populations early in an outbreak. We used a Bayesian hierarchical model to estimate the importance of density‐dependent emigration from lower elevation habitats versus in situ breeding by resident animals to the population growth of invasive ship rats (Rattus rattus) in marginal, high elevation habitats during a pulsed resource event (beech seed mast). We found that emigration from lower elevations was important for facilitating rapid population growth at high elevations, enabling rats to reach peak densities of 10.6 rats ha−1. Without immigration, rats were predicted to reach peak densities of only 1.8 rats ha−1 at high elevation, given their densities in that habitat when we started monitoring (0.6 rats ha−1). This result suggests that rat control that targets low and mid‐elevations only may be sufficient to suppress irruptions in high‐elevation habitat if control effectively prevents immigration. Our study suggests spillover from higher quality habitats may enable outbreaks to rapidly propagate over landscapes. However, for r‐selected taxa such as rodents, even very low densities of animals living in marginal habitats can increase significantly when resource pulses occur, albeit at lower densities than for populations in higher quality habitat.

Allee effect considerations to support the spatial management of a sedentary marine species: the queen conch (

Context Density-dependent marine sedentary species exhibit heterogeneous distribution in response to biological needs and exploitation. Sustainable management requires consideration of factors influencing this distribution, including Allee effects and source–sink dynamics. Aim This study investigates the implications of the Allee effect and source–sink dynamics in the management of a sedentary species, queen conch (Aliger gigas) on the Pedro Bank Jamaica. Method We used spatial analysis of spatio-temporal survey data obtained over an 11-year period to determine spatial distribution and preferences. A depensation model along with knowledge of the connectivity of the population was used to model the Allee effect and define source and sink areas. Key results We found that mate-finding Allee effects and exploitation are major drivers of source–sink dynamics in this population. Sources (the effective spawning stock) consisted of less than 30% of total adult population and were being driven to a low-density stable state because of intensification of the Allee effect from high exploitation. Conclusions Management must explicitly consider Allee effects and source–sink dynamics to avoid overestimations of stock productivity and spatial mismatches of biological and management units. Stocks should be managed well above determined critical-density thresholds because stocks are unlikely to recover once they fall below them.

Assessing landscape connectivity for South-Central Argentine pumas dispersing under genetic source-sink dynamics

Assessing landscape connectivity for South-Central Argentine pumas dispersing under genetic source-sink dynamics

There are No Structural Stable Axiom A 3-Diffeomorphisms with Dynamics “One-dimensional Surfaced Attractor-repeller”

In this paper, we study the structural stability of three-dimensional diffeomorphisms with source-sink dynamics. Here the role of source and sink is played by one-dimensional hyperbolic repeller and attractor. It is well known that in the case when the repeller and the attractor are solenoids (not embedded in the surface), the diffeomorphism is not structurally stable. The author proves that in the case when the attractor and the repeller are canonically embedded in a surface, the diffeomorphism is also not structurally stable.