Nitrogen Source For Bacteria Research Articles

Ammonium continuous removal by zeolite P synthesized using fly ash combined with bacteria in aqueous solution.

The new composite product synthesized by zeolite P and bacteria consisting of nitrobacteria and denitrobacteria can efficiently and continuously remove ammonium in solution through zeolite adsorption and bacteria degradation. In this study, we used fly ash to prepared zeolite P, and then combined bacteria to synthesize the composite product. The adsorption efficiency and mechanism of products for ammonium were further studied by batch and dynamic experiments, and adsorption model. The zeolite P with a relative crystallinity of 84.7% was synthesized using fly ash by an alkali fusion-hydrothermal method. The synthetic zeolite P could combine with bacteria to be prepared an integral adsorption composite that had hierarchical pore structure including macropores, mesopores, and micropores, and its maximum compressive strength reached 106.2 N. The zeolite P could remove ammonium from solution, and Freundlich, Temkin, and Dubinin-Radushkevich models as well as thermodynamic models all showed that the ammonium adsorption by zeolite was mainly physical adsorption. Thus, the adsorbed ammonium was easy to be desorbed and became the nitrogen source for bacteria in composites. By batch experiments, the ammonium adsorption rate of composite product was significantly improved (P < 0.05) compared with zeolite P due to zeolite adsorption and the bacteria degradation. Through dynamic experiments, the composite product could efficiently and continuously remove ammonium from solution than zeolite P and bacteria alone. Therefore, the composite product could form a stable system for the adsorption, desorption, and degradation of ammonium in solution.

Inhibition of Urease by Disulfiram, an FDA-Approved Thiol Reagent Used in Humans.

Urease is a nickel-dependent amidohydrolase that catalyses the decomposition of urea into carbamate and ammonia, a reaction that constitutes an important source of nitrogen for bacteria, fungi and plants. It is recognized as a potential antimicrobial target with an impact on medicine, agriculture, and the environment. The list of possible urease inhibitors is continuously increasing, with a special interest in those that interact with and block the flexible active site flap. We show that disulfiram inhibits urease in Citrullus vulgaris (CVU), following a non-competitive mechanism, and may be one of this kind of inhibitors. Disulfiram is a well-known thiol reagent that has been approved by the FDA for treatment of chronic alcoholism. We also found that other thiol reactive compounds (l-captopril and Bithionol) and quercetin inhibits CVU. These inhibitors protect the enzyme against its full inactivation by the thiol-specific reagent Aldrithiol (2,2′-dipyridyl disulphide, DPS), suggesting that the three drugs bind to the same subsite. Enzyme kinetics, competing inhibition experiments, auto-fluorescence binding experiments, and docking suggest that the disulfiram reactive site is Cys592, which has been proposed as a “hinge” located in the flexible active site flap. This study presents the basis for the use of disulfiram as one potential inhibitor to control urease activity.

L-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.

Sinorhizobium meliloti forms N2-fixing root nodules on alfalfa, and as a free-living bacterium, it can grow on a very broad range of substrates, including l-proline and several related compounds, such as proline betaine, trans-4-hydroxy-l-proline (trans-4-l-Hyp), and cis-4-hydroxy-d-proline (cis-4-d-Hyp). Fourteen hyp genes are induced upon growth of S. meliloti on trans-4-l-Hyp, and of those, hypMNPQ encodes an ABC-type trans-4-l-Hyp transporter and hypRE encodes an epimerase that converts trans-4-l-Hyp to cis-4-d-Hyp in the bacterial cytoplasm. Here, we present evidence that the HypO, HypD, and HypH proteins catalyze the remaining steps in which cis-4-d-Hyp is converted to α-ketoglutarate. The HypO protein functions as a d-amino acid dehydrogenase, converting cis-4-d-Hyp to Δ(1)-pyrroline-4-hydroxy-2-carboxylate, which is deaminated by HypD to α-ketoglutarate semialdehyde and then converted to α-ketoglutarate by HypH. The crystal structure of HypD revealed it to be a member of the N-acetylneuraminate lyase subfamily of the (α/β)8 protein family and is consistent with the known enzymatic mechanism for other members of the group. It was also shown that S. meliloti can catabolize d-proline as both a carbon and a nitrogen source, that d-proline can complement l-proline auxotrophy, and that the catabolism of d-proline is dependent on the hyp cluster. Transport of d-proline involves the HypMNPQ transporter, following which d-proline is converted to Δ(1)-pyrroline-2-carboxylate (P2C) largely via HypO. The P2C is converted to l-proline through the NADPH-dependent reduction of P2C by the previously uncharacterized HypS protein. Thus, overall, we have now completed detailed genetic and/or biochemical characterization of 9 of the 14 hyp genes. Hydroxyproline is abundant in proteins in animal and plant tissues and serves as a carbon and a nitrogen source for bacteria in diverse environments, including the rhizosphere, compost, and the mammalian gut. While the main biochemical features of bacterial hydroxyproline catabolism were elucidated in the 1960s, the genetic and molecular details have only recently been determined. Elucidating the genetics of hydroxyproline catabolism will aid in the annotation of these genes in other genomes and metagenomic libraries. This will facilitate an improved understanding of the importance of this pathway and may assist in determining the prevalence of hydroxyproline in a particular environment.

Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave.

Movile Cave, Romania, is an unusual underground ecosystem that has been sealed off from the outside world for several million years and is sustained by non-phototrophic carbon fixation. Methane and sulfur-oxidising bacteria are the main primary producers, supporting a complex food web that includes bacteria, fungi and cave-adapted invertebrates. A range of methylotrophic bacteria in Movile Cave grow on one-carbon compounds including methylated amines, which are produced via decomposition of organic-rich microbial mats. The role of methylated amines as a carbon and nitrogen source for bacteria in Movile Cave was investigated using a combination of cultivation studies and DNA stable isotope probing (DNA-SIP) using (13)C-monomethylamine (MMA). Two newly developed primer sets targeting the gene for gamma-glutamylmethylamide synthetase (gmaS), the first enzyme of the recently-discovered indirect MMA-oxidation pathway, were applied in functional gene probing. SIP experiments revealed that the obligate methylotroph Methylotenera mobilis is one of the dominant MMA utilisers in the cave. DNA-SIP experiments also showed that a new facultative methylotroph isolated in this study, Catellibacterium sp. LW-1 is probably one of the most active MMA utilisers in Movile Cave. Methylated amines were also used as a nitrogen source by a wide range of non-methylotrophic bacteria in Movile Cave. PCR-based screening of bacterial isolates suggested that the indirect MMA-oxidation pathway involving GMA and N-methylglutamate is widespread among both methylotrophic and non-methylotrophic MMA utilisers from the cave.

The effect of marine colloids on the growth of photosysthetic bacteria

Marine colloids could be an important source of nitrogen for bacteria and photoplankton. But elevated concentration of colloids may stimulate algal growth and lead to red tides in coastal waters. The effects of colloidal organic carbon (COC) concentration on the growth of photosysthetic bacteria (PSB) were investigated under different colloidal treatments in the laboratory. The PSB growth was inversely proportional to COC concentration and was restricted by high-molecular-weight (HMW) colloids (>10 KDa) in treatments with non-nutrient or just inorganic nutrient with low COC concentration (⩽5 μMC). However, the PBS growth was enhanced in the presence of HMW colloids in the treatment with inorganic nutrient and high COC (127 and 255 μMC) or with both inorganic nutrient and low-molecular-weight organic matter. Both bacteria number and bacteria growth ratio increased significantly when the concentration of COC was ⩾5 μMC. Our results suggest that marine colloids can be utilized by bacteria and might regulate primary productivity in coastal waters.

Nitrosubstituted Aromatic Compounds as Nitrogen Source for Bacteria

Bacteria which utilized nitroaromatic compounds (0.5 mM) as sole source of nitrogen were isolated from soil. With 2,6-dinitrophenol and succinate as carbon source, a Pseudomonas strain was isolated which liberated and assimilated nitrite. Approximately 2 mol of NO(2) per mol of 2,6-dinitrophenol was released by resting cells. The xenobiotic compound was totally degraded, although specific growth yields were low even with succinate as a carbon source.