Publisher Summary The polymix system represents a poly(U)-dependent poly(Phe) synthesis where protein synthesis with Escherichia coli ribosomes approaches in vivo levels concerning rate and accuracy. The system has been successfully applied to both the determination of some parameters of the ribosomal fidelity and the analyses of mutants with an altered ribosomal accuracy. In the first step AcPhe-tRNA is bound to ribosomes at 6 mM Mg 2+ , taking into account that tRNA binding requires higher Mg 2+ concentrations than optimal poly(Phe) synthesis. The two incubations at 6 mM Mg 2+ during the first step improve AcPhe-tRNA binding for unknown reasons. For poly (Phe) synthesis the Mg 2+ concentration is decreased to 3 mM, which is required for an optimal rate of Phe incorporation under the applied conditions. It is important to use HEPES buffer instead of Tris, since HEPES has its maximal buffer capacity at pH 7.55 (Tris at pH 8.3) and hence shows fewer changes during temperature shifts. For example, a 10 mM HEPES (Tris) solution adjusted to pH 7.5 at room temperature (21 °) measures at 37° 7.3 (Tris, 7.1) and at 0° 7.7 (Tris, 8.1). In this system the accuracy is impaired at a pH above 7.8 and below 7.3.
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