Appropriate water and nitrogen fertilizer management is crucial for achieving sustainable development in the apple industry. However, the soil nitrogen supply capacity and residual nitrate characteristics under drip fertigation remain poorly understood. Therefore, this study aims to (1) investigate the coupling effects of irrigation and nitrogen levels on the concentrations and distribution characteristics of soil soluble nitrogen fractions and residual soil nitrate; (2) explore the relationships between Christiansen uniformity coefficient (CU) of soil nitrate and apple yield, water productivity (WPc) and nitrogen use efficiency (nitrogen agronomic efficiency, AEn). The field experiment was conducted in a drip-fertigated apple orchard starting in 2017, which included two irrigation levels, 85% (W1) and 100% (W2) of field capacity (FC), and four nitrogen rates, 0 (N1), 120 (N2), 240 (N3) and 360 (N4) kg ha–1. The results showed that nitrogen inputs significantly increased soil soluble inorganic nitrogen and soluble organic nitrogen (SON) contents. However, the SON content significantly decreased when 360 kg N ha–1 was applied, particularly at W1. The maximum nitrate accumulation in the 0–3 m soil layer at N4 reached 2540.97 kg ha–1 in 2021, but the maximum value decreased to 1251.62 kg ha–1 in 2022 due to extreme rainfall. The average CU of residual nitrate across irrigation levels in the 0–3 m soil layer was highest at N3, with values of 0.68 and 0.57 in 2021 and 2022, respectively. High irrigation level increased the diffusion distances of nitrate both vertically and horizontally, resulting in a significant effect on CU. Apple yield and WPc first increased and then decreased with increasing nitrogen rates, while AEn consistently decreased, but they were all greater with a higher CU. The recommended combination of irrigation and nitrogen application was 85% FC and 240 kg N ha–1, which can achieve the dual goals of enhancing soil nitrogen supply capacity and minimizing environmental risks while improving orchard productivity.