Soil Samples Research Articles

Changes in the population and diversity of plant parasitic nematodes and their effects on sugarcane growth at Wonji‐Shoa Sugar Estate, Ethiopia

AbstractIn Wonji‐Shoa Sugar Estate (WSSE), sugarcane (Saccharum spp. hybrid) yields have declined by about 48% over the last 70 years. One of the causes for the decline is assumed to be the long‐term monoculture production system that results in the buildup of plant parasitic nematodes (PPNs). Therefore, the population and diversity of PPNs were investigated by conducting soil sampling using a biosequential method (simultaneous sampling of the soils of adjacent cultivated land [CL] and uncultivated land [UL]) and a chronosequential method (taking soil samples at different times from the same site). The samples were subjected to analysis using standard procedures to determine the change in the population, and identify the genera of PPNs. Additionally, a pot experiment that involved fumigation was conducted on top soils sampled from the CL and UL of the plantation. The results revealed that about 10 genera of PPNs (Meloidogyne, Helicotylenchus, Hoplolaimus, Rotylenchulus, Hemicycliophora, Discriconemella, Xhiphinema, Pratylenchus, Tylenchorhynchus, and Scutellonema) were detected, of which the first four were newly identified. The population density and the number of genera of PPNs found in the CL were 36‐fold and 4.5‐fold higher than those found in the UL, respectively. Furthermore, fumigation reduced the population of the PPNs by 61% and increased production of cane biomass by 63%. It is concluded that the soils of the WSSE are infested by PPNs, which consequently have detrimental effects on sugarcane growth. While amending soil fertility is crucial, reversing the decline in sugarcane yields also necessitates implementing an integrated soil management system that includes PPNs.

Organic matter accumulation encouraged K-strategy bacteria increase and metabolism variation in karst vegetation restoration

Vegetation restoration plays a critical role in terrestrial carbon sink increase, especially in subtropic Southwest China which has been the hotspot of vegetation restoration areas in recent decades. However, the variations in microbial community diversity resulting from this intervention remain unclear, and further research is needed to elucidate the complex interactions between microorganisms and soil nutrient elements. Soil samples were collected from three vegetation restoration stages in a karst rocky desertification (KRD) valley of Southwest China, which were named dry cropland (CL), 3–8 years grassland (WL), and afforestation land that recovered more than 20 years (AL), to investigate the soil nutrient and bacterial diversity variation during vegetation restoration course. The soil organic carbon (SOC) and total nitrogen (TN) contents are significantly higher in the afforestation land soil compared to the cropland and grassland soils, while the available nutrient contents decrease during the vegetation restoration course. The soil dominant bacteria genus shifts from R-strategy bacteria in cropland to K-strategy bacteria in afforestation land, and the relative abundances of R-strategy genera remain similar in the grassland and cropland soil. The dual-relative bacteria network evaluates from simple correlation net to very complex ones during the vegetation restoration, of which the core influenced factor alters from available nutrients to organic matter. The results of this study suggest that it will take a relatively longer period for the soil nutrient conditions and bacterial community to recover fully, although vegetation restoration could reduce the impacts of agricultural activities. This study refers to the ecological preservation and restoration strategies under the global climate change background, elucidating the nutrient metabolism variation induced by the accordance variation of organic matter accumulation and soil bacterial life strategy during the ecosystem restoration course.

Effects of Polycyclic Aromatic Hydrocarbons on Soil Bacterial and Fungal Communities in Soils

Soil organic pollution (such as heavy metals, PAHs, etc.) has caused serious environmental problems, which have resulted in unexpected effects on contaminated soil ecosystems. However, knowledge of the interactions between environmental PAHs and bacterial and fungal communities is still limited. In this study, soil samples from different PAH-contaminated areas including non-contaminated areas (NC), low-contaminated areas (LC), and high-contaminated areas (HC) were selected. Results of toxic equivalent quantity (TEQ) indicated that Benzo[a]pyrene (BaP) and Dibenzo[a,h]anthracene (DBahA) constituted the main TEQs of ∑16PAHs. Incremental lifetime cancer risk (ILCR) assessment revealed that the main pathway of exposure to soil PAHs was dermal contact in adults and children. Furthermore, adults faced a higher total cancer risk (including dermal contact, ingestion, and inhalation) from soil PAHs than children. The microbial community composition analysis demonstrated that soil PAHs could decrease the diversity of bacterial and fungal communities. The relative abundance of Acidobacteriota, Gemmatimonadota, Fimicutes, Bacteroidota, Ascomycota, and Basidiomycota exhibited varying degrees of changes under different concentrations of PAHs. Benzo[a]anthracene (BaA) and Chrysene (Chr) drove the bacterial community composition, while BaP and DBahA drove the fungal community compositions. Co-occurrence network analysis revealed the high contamination levels of PAHs that could change the relationships among different microorganisms and reduce the complexity and stability of fungal and bacterial networks. Overall, these findings provide comprehensive insight into the responses of bacterial and fungal communities to PAHs.

Comprehensive analysis of water and sediment from holy water body ‘Pokhri’ reveals presence of biomolecules that may educe skin, gastroenterological and neurological dysfunction

‘Pokhri mai’ refers to the natural pond amidst the hilly forest slopes of the Buxa tiger reserve (BTR) nearby Jayanti considered to be sacred by the local ethnic groups serving as the prime source of water for wild animals and occasionally by neighbouring inhabitants. However, the water body is designated to be noxious by a group of native people with no scientific validation. This paper focuses to explore its toxicity status and allied environmental concerns through Pokhri water and sediment sample analysis through physicochemical assessment, in vitro antioxidant assay, microbiological investigation followed by AAS, GC–MS and in silico study. pH of soil and water samples were found to be quite high (>6.8) with organic matter, carbon and available nitrogen content being 1.5308 ± 0.28 %, 0.89 ± 0.17 % and 0.072 ± 0.34 % respectively. Profuse microbial growths were observed in both sediment and water samples with consortia obtained exhibiting tolerance against a range of antifungals and antibiotics. Inhibition zone was absent for sediment consortium whereas consortium of water samples portrayed susceptibility against various heavy metals viz. Cu2+, Pb2+, Zn2+, Fe3+ and Al3+ salts with corresponding AAS quantified values of sediment samples being 133, 223.3, 86.8, 1449 and 481.5 ppm. A summative of 18 metabolites were identified by GC–MS in Pokhri lake sediment among which 13 (occupying 96.35 % peak area) were investigated to be potentially toxic with 2,4-Di-tert-butylphenol (53.38 %) as the major compound. Biomolecular characterization, ADMET test and molecular docking study with dermal, gastrointestinal and neural peptides exhibiting high binding affinity scores (ranging between −2.6 to −8.3 kcal/mol) further affirmed the toxicity attributes of the GC–MS deciphered molecules. The findings clearly justifies the local ‘myth’ of Pokhri water to be deleterious with prospective dermatotoxic, neurotoxic and being evident of gastrointestinal toxicity emphasizing ecological risk to the environment, wildlife and microflora of the adjoining forests.

Assessment of Spatial Variability of Major and Micro Nutrients in Soils of Satara District, Maharashtra, India

Georeferenced surface soil samples from eleven (11) tehsils were delineated using stratified random soil sampling method investigation was carried out at All India Co-ordinated Research Project on Micro and Secondary Nutrients and Pollutant Elements in Soils and Plant under Department of Soil Science, Dr. Panjabrao Deshmukh Krishi Vidyapeeth, Akola, Maharashtra to assess the chemical properties, major and micronutrients status in soils of Satara district in the year 2022-2023 of three hundred and thirty soil (330) samples at the depth of (0-20 cm) were collected across the Satara district of Maharashtra and analysed in the laboratory. The results revealed that pH, EC, CaCO3 and OC of soils collected across different tehsils of Satara district varied from 6.00 to 9.43,0.10 to 0.98 dS m-1, 1.50 to 29.25 % and 0.72 to 7.80 g kg-1. The DTPA -Zn, Fe, Cu and Mn in soil of Satara district ranged from 0.18 to 1.85 mg Kg-1, 1.89 to 12.50 mg Kg-1, 0.36 to 2.15 mg Kg-1 and 3.91 to 38.44 mg Kg-1 respectively. The CaCl2-B in soils of all the tehsils ranged from 0.18 to 1.69 mg Kg-1. The results obtained clearly showed a large variability in physio-chemical properties of soil across the Satara district with low nutrient indices were in nitrogen (1.12) and iron (1.51), medium for phosphorus (1.99), Sulphur (2.08) and zinc (1.88), high for potassium (2.92), copper (2.96), manganese (2.77) and boron (2.47).

Persistence and Dissipation Kinetics of λ-Cyhalothrin in Okra Fruits and Soil

Understanding pesticide residue levels in food items and soil is crucial for ensuring food safety. In this context, a study on persistence and dissipation kinetics of λ-cyhalothrin residues in okra fruits and soil was conducted for two consecutive years. λ-cyhalothrin was applied in okra at the recommended dose (15 g a.i. ha-¹) and double dose (30 g a.i. ha-¹). Okra fruit and soil samples were collected at different intervals after second spray and the residues were estimated using GC-MS/MS. The initial residue level in okra fruits was higher at double dose and declined gradually falling below the limit of quantification (0.01 mg kg-¹) within 7 to 10 days of application. Dissipation followed first-order kinetics, with half-life of 2.17 to 2.43 days. In soil, the initial residues dropped below the limit of quantification within 3 to 5 days of application. Since the initial residue levels in both okra fruits and soil were below the corresponding EU–MRL (0.2 mg kg-1), λ-cyhalothrin can be safely used in okra cultivation.

Novel optical optode for selective detection and removal of ultra-trace level of mercury ions in different environmental real samples

Owing to the high cost and unavailability of different analytical techniques, there is an urgent need to develop new techniques not only for detecting but also removing mercury ions in real samples. Thus, an optical chemical sensor based on the anchoring of phenanthraquinone monophenylthiosemicarbazone in a plasticized cellulose triacetate membrane was fabricated and applied to the recognition and removal of mercury ions from aqueous solutions. The synthesized optode was characterized by FT-IR, SEM, AFM, and thermal analysis. Several parameters, including the pH, temperature, contact time, washing solvent, and washing time, were optimized. Under optimal conditions, a promising optode film platform was utilized for sensing mercury ions, and the concentrations were calculated based on colorimetric analysis (Histogram, RGB) of digital images, visualization, and spectrophotometry. Also, an optical optode was used for complete adsorption of mercury ions from aqueous solutions. In addition, the regeneration of the synthesized optode was evaluated using 0.1 mol L− 1 nitric acid, which effectively removed all adsorbed mercury ions. The obtained data indicated good linearity in the sensing and adsorption of Hg2+ over a concentration range of 0.005–5000 µgL− 1 with a low limit of detection (LOD = 0.066 µgL− 1) and limit of quantification (LOQ, 0.22 µgL− 1). Furthermore, it showed good distinctions in the presence of coexisting ions, high stability (five months), good applicability, and reproducibility (RSD = 1.31%), making it a promising sensor for Hg2+ detection. On the other hand, the kinetic studies revealed that the pseudo-second-order was the best model for describing the adsorption behavior of mercury ions on the optode surface. Also, the thermodynamic parameters indicate spontaneous (ΔG0 < 0) and endothermic (ΔH0 < 0) reactions. Also, the maximum adsorption capacity was found to be 73.2 mg g− 1. Thus, the optodes were successfully applied for the detection and/or removal of Hg2+ in different real samples, including cucumber, fish, soil, and water samples, with excellent recoveries of 98.1–99.5%.

Spatial distribution, source apportionment, and health risks assessment of trace elements in pre- and post-monsoon soils in the coal-mining region of North Karanpura basin, India

Coal mining activities in the North Karanpura basin have significantly increased the trace element (TE) concentrations in the soil, resulting in soil pollution and potential health risks. To assess this, 113 soil samples, along with coal, shale, and overburden rocks, were collected from open-cast mining areas during pre-monsoon (Pre-M) and post-monsoon (Post-M) seasons. Seasonal analysis revealed higher TE concentrations in the Post-M period, especially in the SE direction, followed by NE and NW, likely due to surface runoff and deposition, demonstrating temporal variability in TE distribution which corroborated from the spatial distribution maps. Positive matrix factorization (PMF) model identified four factors: mixed sources (F1Pre-M: 37.6 %; F4Post-M: 28.9 %), coal-fired emissions (F2Pre-M: 20.5 %; F3Post-M: 26.0 %), overburden rocks (F3Pre-M: 25.5 %; F2Post-M: 16.7 %), and agricultural and lithogenic origin (F4Pre-M: 16.4 %) during the Pre-M period, attributed to coal mining. Post-M sources were similar, but agricultural and lithogenic origins were replaced by atmospheric deposition (F1Post-M: 28.4 %), enhanced by monsoon effects. Carcinogenic risk assessment revealed that As, Cr, and Ni exceeded acceptable levels for children via ingestion, though adults remained within safe limits. Inhalation and dermal contact were also considered, but ingestion posed the highest risk. The hazard index (HI) via ingestion showed that children had an HI of 1.6 in Pre-M, increasing to 2.66 in Post-M, highlighting their potential vulnerability to non-carcinogenic risks, while adults stayed within safe limits. The expansion of mining areas in the study region led to decrease in vegetative areas which could affect agriculture and local communities, raising a comprehensive environmental and public health issues. These results underline the need for implementing effective biannual soil monitoring and mitigation strategies, such as phytoremediation, bioremediation, rock dust remediation, chemical amendments and improved waste management, to reduce TE contamination.

Comparative Ecotoxicity Assessment of highly bioactive Isomeric monoterpenes carvacrol and thymol on aquatic and edaphic indicators and communities

The growing demand for sustainable natural products to replace harmful synthetic ones requires comprehensive ecotoxicity assessments to ensure their eco-friendly nature. This study explored for the first time the changes in microbial community growth and metabolic profiles from river and natural soil samples exposed to the two structural isomers, thymol (THY) and carvacrol (CARV), utilizing Biolog EcoPlate™ assays and 16S rRNA gene sequencing for taxonomic analysis. In addition, we addressed existing ecotoxicity data gaps for these two compounds by using aquatic (Daphnia magna and Vibrio fischeri) and soil (Eisenia fetida and Allium cepa) indicators. Results show acute toxicity of both CARV and THY on all indicators. V. fischeri (LC50=0.59 mg/L) >D. magna (4.75 mg/L) >A. cepa (6.47 mg/L) for CARV, and V. fischeri (LC50=1.71 mg/L) >A. cepa (4.05 mg/L) >D. magna (8.13 mg/L) for THY. E. fetida showed LC50 = 7.68 mg/Kg for THY and 1.04 for CARV. River and soil microbial communities showed resilience, likely because they contain taxa capable of biodegrading these products. No significant growth inhibition effects were observed up to 100 mg/L, though substrate utilization decreased at higher concentrations, particularly for polymers and amines in soil microorganisms and polymers in aquatic communities. Soil microorganisms were more affected than aquatic ones, with CARV being more toxic than THY (EC50120h = THY 94.13 and CARV 29.79 mg/L in soil microorganisms). These findings suggest that an increase in the consumption of these products and their subsequent ecotoxicity effects from environmental discharge should still be monitored before being ruled out. However, long-term effects are unlikely due to microbial degradation of these natural products, potentially reducing risks to other target species and opening the way for their use as substitutes for commercial antibiotics.

Pesticide residues in tropical agricultural soils: distribution, seasonality, and earthworm ecological risk

Soil contamination by pesticide residues is associated with agricultural intensification in tropical regions and endangers human health and the environment. A mixture of pesticide residues and their degradation products persist in agricultural soils and represent a risk to soil organisms. In this study, we aimed to investigate the concentration and distribution of organochlorine (OC) and organophosphate (OP) pesticide residues in agricultural soils where the industrial cultivation of maize and soybeans is intensively carried out, at three depths (0-5, 5-15, and 15-30 cm) and during two seasons (rainy and dry). Likewise, we performed the ecological risk assessment of those found pesticide residues on two earthworm species, Eisena fetida, and Aporrectoda calagionsa. We calculated the Toxicity-Exposure Ratio (TER) using Predicted no Effect Concentrations (PNEC) and measured concentrations in soils, for identifying the risk of pesticide residues separately. The Risk Quotient (RQ) method was used to evaluate the ecological risk of pesticide residue mixtures in soils from each cropping system. Endrin ketone and dieldrin were the pesticide residues with the highest frequency of detection. The highest concentration in the study was found in a soil sample from maize crops in the dry season at 15-30 cm depth (2917 ng/g). The pesticide mixture from soil samples belonging to maize (0-5 cm) and soybean (5-15 cm) crops in dry season posed the highest ecological risk for A. caliginosa with 100 %, and a maximum RQ of 82.2. Endrin ketone is the OC that contributed most to the overall toxicity of the pesticide mixture in soil samples from maize crop and dieldrin in soil samples from soybean crop. Among OP, disulfoton contributed most to RQsite in soybean crop and methyl parathion in maize crop. Results pointed out the need to apply alternatives to remediate obsolete pesticide residues and restrict the use of methyl parathion and disulfoton in maize and soybean crops, to reduce the ecological risk that represent for earthworms.

Assessment of contamination levels, potential ecological and human health risks due to trace elements pollution in the vicinity of the Lolodorf uranium deposit, Southern Cameroon.

The current study assessed the contamination levels and associated ecological and health risks due to hazardous trace elements in soils from Awanda and Mvengue, located in the vicinity of the Lolodorf uranium deposit in Southern Cameroon. Qualitative and quantitative analyses of the soil samples were performed using energy-dispersive X-ray spectrometry. The results indicated that the mean concentrations of metallic and trace elements in soil samples increased in the following order: U < As < Th < Pb < Cu < Ni < Zn < Cr < Mn < Fe < Al. The average concentrations of U, As, Th, Pb, Cu, Ni, Zn, Cr, Mn, Fe, and Al ranged between 0.9-3, 2.9-3.8, 9.2-15, 13.1-20.3, 11.5-42.5, 31.1-60.7, 42.9-91.6, 94.50-170.9, 100.45-500.57, 4874.8-88340 and 226147.5-324240.0mg/kg, respectively. The contamination levels of trace elements were assessed and the human health risk of chemical elements was determined. The investigated elements' average contamination factors (CF) results showed the highest mean CF recorded for Al followed by Cr, Th, Pb, Zn, Cu, Ni, Fe, U, Mn, and As. Furthermore, the findings showed that 90% of soil samples can be classified as considerably contaminated with Al, 100%, and 60% as moderately contaminated with Cr and Th, respectively. The Geo-accumulation indices of Mn, Cr, Th, U, Ni, Zn, Cu, As, and Pb were lower than 1, suggesting low contamination levels for these elements. The ecological factors and risk indices indicated a low ecological risk in the investigated area. In terms of human health risk, ingestion was identified as the primary pathway for both carcinogenic and non-carcinogenic risks, with children found to be more exposed to both risks than adults. Al, Cr, and Fe were found to be the main contributors to non-carcinogenic health risks, while Cr and Ni were the main contributors to carcinogenic health risks.

Soil archaea response to the water table drawdown in freshwater wetlands in the Yellow River Estuary

Water table dynamics affect the diversity and community structure of archaea in coastal wetlands. However, how the soil archaeal community responds to the water table drawdown remains unexplored. Here, soil samples from flooded freshwater wetlands (FFW) and saturated freshwater wetlands (SFW) were collected to investigate the impact of the water table drawdown on the soil archaeal community. The results showed that the alpha diversity index values in FFW soils were significantly higher than those in SFW soils (p < 0.05). The beta diversity index values indicated significant differences between of the FFW and SFW soils (p < 0.05). Crenarchaeota, Bathyarchaeia, and unidentified_Bathyarcaeia were the most dominant phylum, class and family in both the FFW and SFW soils, respectively, but they showed significantly higher proportions in the SFW soils (p < 0.05). The water table drawdown lowered the archaeal community richness and diversity, and significantly altered the archaeal community structure.

Assessment of radioactivity concentration levels in soil samples around some quarry sites in Akamkpa, Cross River State, Nigeria

Assessment of radioactivity concentration levels in soil samples around some quarry sites in Akamkpa, Cross River State, Nigeria

Response of crop seed germination and primary root elongation to a binary mixture of diclofenac and naproxen.

Non-steroidal anti-inflammatory drugs, diclofenac (DCF) and naproxen (NPX), represent a group of environmental contaminants often detected in various water and soil samples. This work aimed to assess possible phytotoxic effects of DCF and NPX in concentrations 0.1, 1 and 10 mg/L, both individually and in binary mixtures, on the seed germination and primary root elongation of crops, monocots Allium porrum and Zea mays, and dicots Lactuca sativa and Pisum sativum. Results proved that the seed germination was affected by neither individual drugs nor their mixture. The response of primary root length in monocot and dicot species to the same treatment was different. The Inhibition index (%) comparing the root length of drug-treated plants to controls proved to be approximately 10% inhibition in the case of dicots lettuce and pea, and nearly 20% inhibition in monocot leek, but almost 20% stimulation in monocot maize. Assessment of the binary mixture effect confirmed neither synergistic nor antagonistic interaction of DCF and NPX on early plant development in the applied concentration range.

Assessment of soil gas radon migration and transport through the estimation of radon diffusion length and diffusion coefficient in the soil matrix

Naturally occurring radioactive gas, radon is a decay product of radium present in the soil. Radon flux reaches the atmosphere through exhalation from soil surface. This study aims to estimate the radon diffusion length and diffusion coefficient in soil matrix on the premises of HNB Garhwal University campus at Tehri Garhwal, India. Soil gas radon concentration was measured at different depths (15, 30, 45, 60, 75, and 90 cm) using a Smart RnDuo (Scintillation-detector) at 14 different locations in the university campus. Simultaneous measurement of surface and mass exhalation rates was also carried out for each location. Gamma-ray spectrometry was used to estimate the radium content in soil samples. Results of the present study suggest that soil gas radon concentration increases with increasing sampling depth. The diffusion coefficient and length were calculated using the soil gas radon concentration gradient within the soil matrix. The average value of diffusion length (l) and diffusion coefficient (D) were obtained as, ls = 0.70 ± 0.22 m, Ds = 0.0054 ± 0.0049 m2 sec-1 and la = 0.77 ± 0.63 m, Da = 0.0073 ± 0.014 m2 sec-1 by Fick’s diffusion model and analytic models, respectively.

Effects of Cover Crop on Selected Abiotic and Biotic Soil Health Indicators

Current cropping systems, like cover cropping, aim to improve soil health and crop productivity, with the former a more sustainable route to the latter. This can be done by evaluating the influence of cover crops (CCs) on soil health indicators, both abiotic and biotic, as is the objective of this study. Several CCs (crimson clover [Trifolium incarnatum L.], oats [Avena sativa], hairy vetch [Vicia villosa Roth.], winter wheat [Triticum aestivum L.], winter peas [Lathyrus hirsutus L.], flax [Linum usitassimum L.], triticale [Triticale hexaploide Lart.], cereal rye [Secale cereale], and barley [Hordeum vulgare L.]) were used across two research sites, set up using a completely randomized design with two levels of CCs (CC vs no cover crop [NC]) and three replicates during 2023. Soil samples were collected at 0-10, 10-20, and 20-30 cm depths and analyzed for soil physico-chemical properties and microbial biomass and composition. Results showed significantly lower bulk density values, greater water content (at 0 kPa soil water matric potential), greater volume-specific heat capacity (at 0 and -33 kPa soil water matric potential), greater total nitrogen, and numerically greater soil organic carbon under CC compared with NC management. This led to numerically greater microbial biomass and community composition (e.g., arbuscular mycorrhizal fungi, gram-negative and gram-positive bacteria, eukaryotes, and fungi), and slightly lower microbial stress indicators (genotypic and chemical structure categorizations) under CC compared with NC management. However, the lack of significant differences between treatments suggests that three years is insufficient to detect improvements in measured soil health indicators. Further, the significant differences in measured soil health indicators between study sites suggests an influence of soil texture and order, and this warrants further investigations.

Optimizing Voltage for Effective X-ray Computed Tomography Scan: A Study on Varied Soil Bulk Densities and Container Sizes

Numerous studies have highlighted the role of X-ray computed tomography (X-ray CT) in understanding root architecture. Nevertheless, setting definitive scanning parameters for diverse soils in varied container sizes remains challenging. This study investigates the influence of X-ray CT system voltage on the penetration capability in diverse soils and container sizes, focusing on two key parameters: (1) gray values, which indicate X-ray attenuation and contribute to image contrast, and (2) signal-to-noise ratio, a measure of image clarity. Five soil samples were collected from various depths within a soil profile to encompass bulk density values ranging from 1.34 to 1.84 g·cm−3 to conduct the experiment. Containers with dimensions of 6 × 6 × 6 cm³, 8 × 8 × 6 cm³, 10 × 10 × 6 cm³, 12 × 12 × 6 cm³, 14 × 14 × 6 cm³, and 16 × 16 × 6 cm³ were used. Voltage levels spanning 75 to 225 kV, in 25-kV increments, were applied to each sample. The observed gray values of the X-ray images were fitted using a logistic model of three parameters. Results showed that increasing voltage leads to enhanced penetration up to a plateau point, irrespective of soil density or container size. This plateau could potentially yield higher quality scans, given that lower voltages result in subdued gray values and reduced image contrast. Notably, it was observed that soil properties, including mineral composition, directly affect image gray values. This study established optimal voltage settings for specific soil types at fixed densities, offering valuable insights for researchers investigating soil–root interactions. Although the current findings are based on five soils, a more extensive sampling encompassing diverse soil textures and densities is necessary for a comprehensive understanding of X-ray penetration behavior across various soil types.

Effects of burning on vegetation, soil physicochemistry and prokaryotic microbial communities in surface and subsurface peat

Prescribed burning is a common management strategy in peatlands that has the potential to affect soil physicochemistry, alter biogeochemical cycles and trigger changes in vegetation structure. How burning affects prokaryotic community composition across different soil profiles is not well understood. This study explored the effects of prescribed burning on the diversity of prokaryotic communities in peat soils. Soil samples were collected from Moor House Nature Reserve, UK, a long-term monitoring site initiated in 1954 subject to three burning treatments: Burning at short rotations every 10 years, burning at long rotations every 20 years and a non-burn control. Observed species richness for archaea was highest in the topsoil of the non-burn control plots and highest for bacteria in the topsoil of the non-burn control and plots under a long rotation regime. Community composition was significantly different between different burn treatments and soil depth. Archaeal community structure was shaped by NH4+ and pH in the topsoil; by Pb, moisture and Al in the 20–40 cm profile; and by total N, total C, Al, Ca, Fe and pH in the 40–60 cm profile. Bacterial community structure was shaped by NH4+, heather cover, pH and Mg in the topsoil; by Fe, K and Pb in the 20–40 cm profile; and by Al, Ca and Fe in the 40–60 cm profile. A co-occurrence network analysis revealed that the topsoil of the non-burn control plots had a more complex network structure with more positive links than those under a rotational burn, but a higher average connectivity with a higher number of negative links was observed in the long rotation 20–40 cm profile. The results provide a new insight into the response processes of soil prokaryotic communities to burning in peatland soils, providing valuable knowledge that can support the evaluation and management of ecosystem services in peatlands.

Metagenomic Insights into Coal Slag Remediation Effects on Soil and Microbial Health in Qinghai’s Muli Coal Mine

Long-term coal mining in the Muli coal mine area of Qinghai Province has degraded soil quality and reduced microbial diversity, making it imperative to implement effective ecological restoration measures to restore soil quality and enhance ecosystem functions. This study evaluated soil samples under 11 ecological restoration treatments using metagenomic sequencing combined with soil quality analysis to explore the responses of the microbial community structure and function to identify effective restoration measures. This study demonstrated that ecological restoration significantly increased the soil microbial diversity and richness, with the MLII1 (soil samples treated with a chemical weathering agent, attapulgite, and a microbial agent) and MLIII1 (soil samples treated with sheep manure (2.4 kg/m2), granular organic fertilizer (1.2 kg/m2), and the microbial agent) treatment groups performing exceptionally well. Further analysis of the functional networks revealed that although the MLII2 (soil samples treated with the chemical weathering agent and attapulgite) treatment group did not exhibit the highest species diversity, it exhibited the highest functional network complexity. The results of hierarchical clustering analysis showed that the microbial community of the MLII2 treatment group was most similar to that of the natural meadows compared to the other treatment groups. From the perspective of overall ecological restoration, this study concluded that the MLII2 treatment group exhibited the most favorable ecological restoration outcomes. This finding emphasizes the importance of not only enhancing microbial diversity but also prioritizing the restoration of community functions, especially for the recovery of fragile high-altitude ecosystems.

Cover crops and P‐fertilizer management affect microbial activity in a US Midwest corn and soybean rotation

AbstractMicroorganisms can have a substantial effect on labile phosphorus (P), which may be lost from the soil surface and impact water quality. Changes in nutrient availability and soil health from agricultural management can affect microbial biomass carbon (MB‐C), microbial biomass phosphorus (MB‐P), and the expression of P cycling enzymes. The objective of this research was to investigate biological mechanisms affecting P availability and potential loss to runoff in a no‐till, corn (Zea mays)–soybean (Glycine max) cropping system with two cover crops (cover crop [CC] and no cover crop [NC]) and three P management treatments (fall broadcast [FB], spring injected ammonium polyphosphate [SI], and no phosphorus application [NP]). Treatments were applied to a randomized block design with three replicates. Soil samples were analyzed for MB‐P, MB‐C, phosphatase activity, and Mehlich‐III P (PM). The P supply to the soil solution was measured using diffusive gradient thin film P (PDGT). In Spring 2018, Fall 2018, and Spring 2019, all phosphatase activity was greater in CC versus NC (p &lt; 0.01). Microbial biomass C was greater in CC compared with NC in spring but not fall samplings. On average, MB‐P was fivefold greater in the P fertilized than unfertilized treatments (p &lt; 0.001). CCs did not change MB‐P, PM, or PDGT within FB or NP, but did affect SI fertilizer treatments. Our results suggest CC can increase potential for organic P mineralization, application of P fertilizer increases MB‐P, and an interaction between SI P fertilizer management and CC may increase P supply to the soil solution.