Soil Organic Matter Transformation Research Articles

The molecular binding sequence transformation of soil organic matter and biochar dissolved black carbon antagonizes the transport of 2,4,6-trichlorophenol

Dissolved organic matter (DOM) and dissolved black carbon (DBC) are significant environmental factors that influence the transport of organic pollutants. However, the mechanisms by which their molecular diversity affects pollutant transport remain unclear. This study elucidates the molecular binding sequence and adsorption sites through which DOM/DBC compounds antagonize the transport of 2,4,6-trichlorophenol (TCP) using column experiments and modelling. DBC exhibits a high TCP adsorption rate (kn = 5.32 × 10−22 mol1–n∙Ln–1∙min−1) and conditional stability constant (logK = 5.19–5.74), indicating a strong binding affinity and antagonistic effect on TCP. This is attributed to the high relative content of lipid/protein compounds in DBC (25.65 % and 30.28 %, respectively). Moreover, the small molecule lipid compounds showed stronger TCP adsorption energy (Ead = −0.0071 eV/−0.0093 eV) in DOM/DBC, combined with two-dimensional correlation spectroscopy model found that DOM/DBC antagonized TCP transport in the environment through binding sequences that transformed from lipid/protein small molecule compounds to lignin/tannin compounds. This study used a multifaceted approach to comprehensively assess the impact of DOM/DBC on TCP transport. It reveals that the molecular diversity of DOM/DBC is a critical factor affecting pollutant transport, providing important insights into the environmental trend and ecological effects of pollutants.

Molecular Weight Distribution of Humic Acids Isolated from Calcic Cryosol in Central Yakutia, Russia.

The transition of soils into fallow state has a significant impact on the accumulation and transformation of soil organic matter (SOM). However, the issue of SOM transformation as a result of soil transition to fallow state in cryolithozone conditions is insufficiently studied. The aim of this study is to investigate the molecular weight (MW) distribution of humic acids (HAs) isolated from soils of central Yakutia. Native, fallow and agricultural soils in the vicinity of Yakutsk city were studied. MW distributions of HA preparations were obtained on an AKTAbasic 10 UPS chromatographic system (Amersam Biosciences, Uppsala, Sweden) using a SuperdexTM 200 10/300 GL column (with cross-linked dextran gel, fractionation range for globular proteins 10-600 kDa). The data on the molecular-mass distribution of HAs of fallow and agricultural soils of Central Yakutia were obtained for the first time. According to the obtained data, it was found that the highest carbon content in the structure of HAs was observed in agricultural soils (52.56%), and is associated with soil cultivation and fertilizer application. Among the HAs of fallow soils, we note that those soils that are in the process of self-vegetation have a relatively high carbon content in the HAs (45.84%), but the highest content was observed in fallow soils used as hayfields (49.98%), indicating that the reinvolvement of agriculture in fallow soils leads to an increase in the carbon content of HAs. According to the data of the MW distribution of HAs, it was found that the highest content of a high MW fraction of HAs was recorded in native soil (18.8%); this is due to the early stages of humification and the low maturity of organic matter. The highest content of a low MW fraction of HAs was recorded in agricultural soil (73.3%); this is due to the formation of molecular complexes of a "secondary" nature, which are more stable in the environment than the primary transformation products of humification precursors. The molecular composition of the HAs of fallow soils in the process of self-overgrowing is characterized by values closer to the HAs of native soils, which indicates their transformation towards HAs of native soils. The obtained results indicate that the reinvolvement of fallow soils leads to the transformation of the molecular composition of HAs towards HAs of agricultural soils, and to an increase in the resistance of SOM to biodegradation.

Differential responses of the electron transfer capacities of soil humic acid and fulvic acid to long-term wastewater irrigation

Wastewater irrigation is used to supplement agricultural irrigation because of its benefits and freshwater resource scarcity. However, whether wastewater irrigation for many years affects the electron transfer capacity (ETC) of natural organic matter in soil remains unclear, and organic matter could influence the decomposition and mineralization of substances with redox characteristics in soil through electron transfer, ultimately affecting the soil environment. The composition of soil humic substances (HS) is highly complex, and the effects of soil humic acid (HA) and fulvic acid (FA) on ETC is poorly understood. In this study, we separately evaluated the responses of the electron-accepting capacity (EAC) and electron-donating capacity (EDC) of soil HA and FA in agricultural fields to various durations of wastewater irrigation. Results showed that the EAC of HA and FA increased significantly with increasing the duration of wastewater irrigation. When wastewater irrigation lasted for 56 years, the EAC of HA showed a higher increment (590 %) than that of FA (223 %). The EDC of soil HA and FA, conversely, decreased compared to the control, with the highest reduction of 35.6 % for HA and 65.9 % for FA. Specifically, the EDC of HA gradually decreased starting from 29 years of wastewater irrigation, whereas the decrease in the EDC of FA exhibited no clear pattern in relation to the duration of wastewater irrigation. Increased soil organic matter and total nitrogen content under long-term wastewater irrigation led to an increase in sucrase and phosphatase activities, along with an increase in EAC and a decrease in EDC of HS. This suggests that soil enzyme activities may ultimately lead to changes in ETC. The results of this research provide practical insights into the redox system in soil and its driving role in soil organic matter transformation and nutrient cycling under wastewater irrigation.

The Use of Spectroscopic Methods to Study Organic Matter in Virgin and Arable Soils: A Scoping Review

The use of modern spectroscopic methods of analysis, which provide extensive information on the chemical nature of substances, significantly expands our understanding of the molecular composition and properties of soil organic matter (SOM) and its transformation and stabilization processes in various ecosystems and geochemical conditions. The aim of this review is to identify and analyze studies related to the application of nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR) spectroscopy techniques to study the molecular composition and transformation of organic matter in virgin and arable soils. This article is mainly based on three research questions: (1) Which NMR spectroscopy techniques are used to study SOM, and what are their disadvantages and advantages? (2) How is the NMR spectroscopy technique used to study the molecular structure of different pools of SOM? (3) How is ESR spectroscopy used in SOM chemistry, and what are its advantages and limitations? Relevant studies published between 1996 and 2024 were searched in four databases: eLIBRARY, MDPI, ScienceDirect and Springer. We excluded non-English-language articles, review articles, non-peer-reviewed articles and other non-article publications, as well as publications that were not available according to the search protocols. Exclusion criteria for articles were studies that used NMR and EPR techniques to study non-SOM and where these techniques were not the primary methods. Our scoping review found that both solid-state and solution-state NMR spectroscopy are commonly used to study the structure of soil organic matter (SOM). Solution-phase NMR is particularly useful for studying soluble SOM components of a low molecular weight, whereas solid-phase NMR offers advantages such as higher 13C atom concentration for stronger signals and faster analysis time. However, solution-phase NMR has limitations including sample insolubility, potential signal aggregation and reduced sensitivity and resolution. Solid-state NMR is better at detecting non-protonated carbon atoms and identifying heterogeneous regions within structures. EPR spectroscopy, on the other hand, offers significant advantages in experimental biochemistry due to its high sensitivity and ability to provide detailed information about substances containing free radicals (FRs), aiding in the assessment of their reactivity and transformations. Understanding the FR structure in biopolymers can help to study the formation and transformation of SOM. The integration of two- and three-dimensional NMR spectroscopy with other analytical methods, such as chromatography, mass spectrometry, etc., provides a more comprehensive approach to deciphering the complex composition of SOM than one-dimensional techniques alone.

Tree species, mycorrhizal associations, and land-use history as drivers of cohesion in soil biota communities and microbe-fauna interactions

Community cohesion is a recent concept in ecology referring to the varying levels of connectivity and integration between populations of different taxonomic or functional groups within ecosystems. Positive cohesion denotes positive interactions such as mutualism or facilitation, while negative cohesion implies negative interactions such as competitive exclusion or a preference for different habitats. However, the effects of ecosystem characteristics such as tree species identity, mycorrhizal association and land-use history on soil biota community cohesion and microbe-fauna interactions remains poorly understood. We analyzed data on soil microbial biomass and biomass of taxonomic and functional groups of soil fauna obtained from monoculture stands of broadleaved tree species (maple and ash) associated with arbuscular mycorrhiza (AM), broadleaved tree species (beech, lime, and oak) associated with ectomycorrhizal fungi (ECM) and coniferous Norway spruce associated with ECM planted in common garden designs on former cropland and former forest land across Denmark. Our results revealed both positive and negative cohesion within soil communities, with only negative cohesion varying significantly among tree species. Soil biota communities under spruce indicated the most negative cohesion, whereas maple and ash soils showed least negative cohesion. Community cohesion varied across different sampling locations and between sites with different land-use histories. Positive cohesion was more pronounced in former cropland than in former old forest land, while negative cohesion was more pronounced in soils under tree species associated with ECM fungi than in soils beneath tree species associated with AM fungi. Both positive and negative cohesion were strongly influenced by litter chemistry and soil properties, indicating complex ecological dynamics. Soil pH, litter decomposition indices, and soil C:N ratio emerged as key drivers of microbial and faunal community structures. Additionally, the total microbial and faunal biomass, as well as the community structure of soil microbial and faunal communities, indicated strong positive interactions. Our results have the potential to support forest management by aiding in the selection of suitable tree species to support different groups of soil microbes and fauna, which play crucial role in ecosystem services such as nutrient release and transformation of soil organic matter.

Microbial transformation of soil organic matter under varying agricultural management systems in Ukraine.

This paper presents comparative studies on the content and structure of organic matter (OM) and the activity of microbiological cellulose destruction in three types of Ukrainian soils intensively used in agricultural production. The highest content of humus in the arable layer (4.9%), OM (410 t ha-1), and total carbon (30.9 mg C g-1 soil) was determined in chernic phaeozems, which is 2.2-2.5 times higher than in albic retisols. The soil of natural ecosystems is characterised by a high content of microbial carbon (Cmic) in the carbon fraction of organic soil compounds. In arable soils, the content and reserves of humus and soil organic matter (SOM) have decreased by an average of 1.5-2 times. The most considerable loss of humus reserves in the soil profile was identified in albic retisols (1.96-1.44 times) and the smallest in chernic phaeozems (1.27-1.81 times). During the long-term systematic application of mineral fertilisers, the Corg content decreased by 8-21% in chernic phaeozems, 12-33% in greyzemic phaeozems, and 6-38% in albic retisols. A significant difference of 2.1-8.0 times was determined regarding the number of aerobic cellulolytic microorganisms and 1.3-3.3 times in the potential cellulolytic activity of the studied soils. The high number of cellulose-destroying microorganisms is characteristic of chernic phaeozems with a high content of OM in the soil; the advantage over other types of studied soils was 1.4 times and 7.8 times for greyzemic phaeozems and albic retisols, respectively. Among the studied soil types, high values of CO2 emissions were identified in chernic phaeozems. Intensive agricultural practices in Ukrainian soils have significantly altered the content and composition of organic matter, leading to reduced humus and soil organic matter reserves. The study also underscores the importance of considering the abundance of cellulose-destroying microorganisms and their potential activity in assessing soil health and sustainability.

Soil Microbial and Enzymatic Properties in Luvisols as Affected by Different Types of Agricultural Land-Use Systems and Soil Depth

Determination of the microbial and enzymatic properties in soil is primarily concentrated on the surface layers of the soil profiles; however, it is well known that the transformation of soil organic matter also occurs in the deeper horizons of the soil profile. The aim of this study was to assess any changes in specific sets of enzyme activities and their associated physicochemical properties as affected by two different agricultural land-use systems and soil depth. Changes in the studied properties were determined across four Luvisol profiles in two agricultural land uses (arable land and vineyards). The enzyme activities associated with the transformation of C, N and P were analyzed. Additionally, the activity of some oxidoreductases and the fluorescein diacetate hydrolysis (FDAH) rate were also determined. Moreover, the content of the various forms of soil carbon, nitrogen, phosphorus (including microbial biomass C, N and P) and some other properties (pH, clay and silt content) were assessed. Agricultural land use significantly affected the microbial biomass content and as well as the studied enzyme activities. Most of the studied enzymes exhibited a higher activity in the grapevine (GV) profiles, which was followed by the winter wheat (WW) profiles; however, the largest variability occurred for the urease activity. There was no clear differentiation between the two studied land uses for the activity of nitrate reductase, dehydrogenases, acid phosphatase, or endo- and exo-cellulase. Irrespective of the plant being cultivated, the soil variables decreased significantly with increasing soil depth, wherein the greatest changes were observed between the surface and sub-surface soil horizons (I–II). The activity of some enzymes (e.g., the urease activity in WW profiles) decreased gradually across the soil profiles, while others were located almost solely within the surface layers (e.g., the nitrate reductase activity in the GV profiles as well as invertase in the WW profiles). The α-glucosidase activity did not exhibit any statistically significant changes along the analyzed profiles. The activity of phenol oxidase and peroxidase also revealed different trends along the studied profiles compared to the other enzymes and did not decrease gradually with depth. The microbial biomass of the C, N and P content was generally the highest in the upper horizons and gradually decreased with depth, wherein the largest decrease was observed between the surface and sub-surface horizon. The studied enzyme activities were more dependent on the soil carbon content compared to the other soil properties. And thus, in the C-rich horizons (C > 4 g kg) for the surface and subsurface layers the enzyme activities were highly correlated with TOC, DOC and MBC content as compared to the deeper, C-low horizons (C < 4 g kg). By examining how the microbial and enzymatic properties change across the soil profiles, it is possible to gain valuable insight into the long-term biogeochemical processes that are involved in soil fertility and in the health of agricultural ecosystems.

Dynamics of the microorganisms’ number in the soil mass of podzolized chernozem after treatment with fungicides of various origins

In a laboratory model experiment, the dynamics of the number of bacteria and micromycetes in the soil mass of podzolized chernozem after a one-time treatment of its surface with fungicides of various origins investigated. Chemical fungicides based on the active substances carbendazim, tebuconazole and azoxystrobin, and biological fungicides based on the antagonistic fungi Trichoderma viride (lignorum) and Chaetomium cohliodes were used. The soil mass for the experiment was taken from the arable layer of the soil on the site without fertilizers in the field experiment of the Department of Agrochemistry NSC "Institute for Soil Science and Agrochemistry Research named after O. N. Sokolovsky" (NSC "ISSAR") on the territory of SE "EF Hrakivske" (Noviy Korotych village, Kharkiv district, Kharkiv region). During 110 days of composting at a constant temperature, changes in the state of microbial communities, in particular soil micromycetes, and the speed and completeness of their recovery compared to soil not treated with fungicides evaluated. The state of the microflora was monitored four times during the study period according to the parameters of the number of microorganisms belonging to various ecological-trophic and taxonomic groups, the total biological index (TBI) and indicators reflecting the functional state of microbial coenoses (oligotrophy and mineralization indices, the coefficient of microbial transformation of soil organic matter (MTSOM). On the fifth day after treatment with fungicides, the number of bacteria and micromycetes in the samples of the treated soil mass was slightly higher higher than in the control samples, and on the twentieth day, on the contrary, it was significantly lower. The number of bacteria was lower by 20-46 %, micromycetes by 16-34 % compared to the control. On the fortieth day, a partial restoration of the number of bacteria to the level of the untreated control soil observed, and the number of micromycetes remained lower by 9-36 % compared to the control in the case of chemical fungicides. When using biological fungicides, the number of micromycetes approached the values in control soil and accounted for 84-94 % of them. On the one hundred and tenth day, the number of microflora in the soil treated with chemical fungicides according to TBI was 79-89 % of the control values, and in the soil treated with biofungicides it was 102-104 %. The number of micromycetes decreased to a lesser extent and recovered most completely and quickly in the case of the application of the biological fungicide Hetomic. Given the important role of soil micromycetes in the functioning of soils, a decrease in their number due to the accumulation of residual amounts of chemical fungicides in the soil can have a negative impact on many soil-biological processes, in particular the decomposition of plant residues and further transformation of organic matter, as well as on the phytosanitary state of the soil. Therefore, in order to avoid the possible consequences of their excessive or repeated application and the associated threat of soil contamination, it is necessary to carry out microbiological monitoring of soils in areas with a high fungicide load.

Soil organic matter turnover: Global implications from δ13C and δ15N signatures

The turnover and residence time of carbon (C) and nitrogen (N) in soil is a fundamental parameter reflecting the rates of soil organic matter (SOM) transformation and the contribution of soils to greenhouse gases fluxes. Based on the global database of the stable isotope composition of C (δ13C) and N (δ15N) depending on soil depth (171 profiles), we assessed С and N turnover and related them to climate, biome types and soil properties. The 13C and 15N discrimination between the litter horizon and mineral soil was evaluated to explain the key processes of litter transformation. The 13C and 15N discrimination by microbial utilization of litter and SOM, as well as the continuous increase of δ13C and δ15N with depth, enabled to assess C and N turnover within SOM. N turnover was two times faster than that of C, which reflects i) repeated N recycling by microorganisms accelerating N turnover, ii) C loss as CO2 and input of new C atoms to cycling, which reduces the C turnover within soil, and iii) generally slower turnover of N free persistent organic compounds (e.g. lignin, suberin, cellulose) compared to the N containing compounds (e.g. amino acids, ribonucleic acids). An increase in temperature and precipitation accelerated C and N turnover because: i) higher microbial activity and SOM decomposition rate, ii) larger soil moisture and fast diffusion of dissolved organics towards exoenzymes, iii) downward transport of 13C-enriched organic matter (e.g. sugars, amino acids), and iii) leaching of 15N-depleted nitrates from the topsoil into subsoil and losses from the whole soil profile. Temperature accelerates SOM turnover stronger than precipitation. The temperature increase by 10 °C accelerates the C and N turnover for 40 %. SOM turnover is boosted by decreasing C/N ratio because: i) SOM with a high C/N ratio originated from litter is converted to microbially-derived SOM in mineral soil characterized by a low C/N ratio; ii) litter with a low C/N ratio is decomposed faster than litter with a high C/N; iii) microbial carbon-use efficiency increases with N availability. The biome type affects SOM decomposition by i) climate: slower turnover under wet and cold conditions, and ii) by litter quality: faster utilization of leaves than needles. Thus, the fastest C turnover is common under evergreen forests and the lowest under mixed and coniferous ones, whereas temperature and C/N ratio are the main factors controlling SOM turnover. Concluding, the assessment of SOM turnover by δ13C and δ15N approach showed two times faster N turnover compared to C, and specifics of SOM turnover depending on the biomes as well as climate conditions.

Contrasting mechanisms of nutrient mobilization in rhizosphere hotspots driven by straw and biochar amendment

Straw return strategies are widely used green management practices that can alter soil organic matter transformation and dynamics through changes in microbial community structure and functions. How the exogenous input of organic materials of contrasting qualities affects the composition of dominant taxa, growth, and microbial functional properties related to nutrient acquisition in space remains unclear. In this study, we investigated the hotsopts and kinetics of C- and N-acquiring hydrolases, microbial growth, and bacterial community structure in maize rhizosphere hotspots after the addition of straw and straw-derived biochar using soil zymography, substrate-induced respiration and high-throughput sequencing. Compared with no amendment and maize straw-derived biochar, straw addition increased the growing biomass and microbial specific growth rate by 1.2–1.6 and 1.7–2.0-fold, respectively, indicating the relative dominance of fast-growing r-strategists. This corresponds to an increased relative abundance of the keystone taxa Firmicutes and their gene copies encoding β-1,4-glucosidase (BG) and β-N-acetylglucosaminidase (NAG). The potential activity and affinity (Vmax and Km) of BG increased 2.2 and 1.8 times, respectively, and those of NAG increased 4.0 and 2.0 times, respectively. In contrast, the relative abundance of Actinobacteria belonging to K-strategists increased in the biochar-amended soil. This resulted in slower growth and retarded enzymatic activity than the straw return treatment. Biochar enhanced the root biomass by 31% and increased the rhizosphere hotspot extents of BG and NAG by 26% and 47%, respectively. The highest robustness and modularity of the co-occurrence network indicated a more stable network with biochar input. In summary, the addition of straw accelerated rhizosphere nutrient cycling by triggering microbial growth, especially fast-growth r-strategists (Firmicutes), and synthesizing a large number of enzymes. In contrast, the addition of biochar increased rhizosphere nutrient mobilization by expanding the extent of rhizosphere hotspots to mobilize nutrients from a larger soil volume. This suggests that there are different strategies for nutrient mobilization in the rhizosphere with contrasting exogenous C addition.

Changes in Molecular Structure of Humic Substances in Cambisols under Agricultural Use

Soil organic matter stability and transformation affected by agriculture is a global problem of great concern. This study aimed to reveal structural changes in humic molecules under conventional soil tillage in Cambisols of the Transbaikal area. Humic acids were isolated from the humus horizons of native and arable variants of Eutric Cambisol Cryic (gleyic, humic, loamic) from the forest steppe, and Haplic Cambisol (arenic, humic, protocalcic) from the steppe zone. The changes in the humic substances’ quality were evaluated by means of an elemental analysis and 13C nuclear magnetic resonance spectroscopy. The results indicate that different agronomic management affected the changes in the composition and molecular structure of humic acids. Soil tillage induced an increase in the carbon content, the proportion of aromatic compounds and carboxyl groups and the depletion in nitrogen. As measured by 13C NMR spectroscopy, the intensity of these changes was determined by soil properties and the hydrothermal regime. Organic matter from Eutric Cambisol Cryic was suggested as providing significant environmental resistance to the agricultural impact due to the optimization of the water regime and a loamy texture. Prolonged ploughing of sandy Haplic Cambisol under the arid conditions promoted deep changes in the humic substances’ composition and chemical structure.

Soil organic matter dynamics mediated by arbuscular mycorrhizal fungi - an updated conceptual framework.

Arbuscular mycorrhizal (AM) fungi play an important role in soil organic matter (SOM) formation and stabilization. Previous studies have emphasized organic compounds produced by AM fungi as persistent binding agents for aggregate formation and SOM storage. This concept overlooks the multiple biogeochemical processes mediated by AM fungal activities, which drive SOM generation, reprocessing, reorganization, and stabilization. Here, we propose an updated conceptual framework to facilitate a mechanistic understanding of the role of AM fungi in SOM dynamics. In this framework, four pathways for AM fungi-mediated SOM dynamics are included: 'Generating', AM fungal exudates and biomass serve as key sources of SOM chemodiversity; 'Reprocessing', hyphosphere microorganisms drive SOM decomposition and resynthesis; 'Reorganizing', AM fungi mediate soil physical changes and influence SOM transport, redistribution, transformation, and storage; and 'Stabilizing', AM fungi drive mineral weathering and organo-mineral interactions for SOM stabilization. Moreover, we discuss the AM fungal role in SOM dynamics at different scales, especially when translating results from small scales to complex larger scales. We believe that working with this conceptual framework can allow a better understanding of AM fungal role in SOM dynamics, therefore facilitating the development of mycorrhiza-based technologies toward soil health and global change mitigation.

Quantitative Approaches in Assessing Soil Organic Matter Dynamics for Sustainable Management

The aim of this study was to provide an overview of the approaches and methods used to assess the dynamics of soil organic matter (SOM). This included identifying relevant processes that describe and estimate SOM decomposition, lability, and humification for the purpose of sustainable management. Various existing techniques and models for the qualitative and quantitative assessment of SOM were evaluated to gain a better understanding of advances in organic matter transformation. This evaluation aimed to identify the strengths, limitations, and applications of these techniques and models, and to highlight new research directions in the field. Quantitative analysis of SOM can be performed using various parameters, including oxidation kinetics, lability, carbon management index, humification degree, humification index, and humification ratio. On the other hand, qualitative evaluation of SOM can involve techniques such as oxidizability, high-performance size-exclusion chromatography, electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry, visual examination, smell, assessment of microorganism content, plant growth, cation exchange capacity, type of organic material, and decomposition. These techniques and parameters provide valuable insights into the characteristics and transformation of SOM, enabling a comprehensive understanding of its dynamics. Evaluating SOM dynamics is of utmost importance as it is a determining factor for soil health, fertility, organic matter stability, and sustainability. Therefore, developing SOM models and other assessment techniques based on soil properties, environmental factors, and management practices can serve as a tool for sustainable management. Long-term or extensive short-term experimental data should be used for modeling to obtain reliable results, especially for quantitative SOM transformation analysis, and changes in the quality and quantity of SOM should be considered when developing sustainable soil management strategies.

Enhancing Soil Organic Matter Transformation through Sustainable Farming Practices: Evaluating Labile Soil Organic Matter Fraction Dynamics and Identifying Potential Early Indicators

The growing global population and increasing demand for agricultural products have exerted significant pressure on agricultural systems. As a result, soil organic matter depletion and degradation have become prevalent issues, including in regions such as South Bohemia, Czech Republic, where conventional farming practices are predominant. Soil organic matter (SOM) plays a critical role in soil health, crop productivity, and the sustainability of agricultural systems, with changes occurring in both the total and labile fractions of the organic matter pools. However, changes in the total soil organic matter carbon pool (TOC) resulting from agricultural practices occur gradually and may become evident only after several years, posing challenges for timely management adjustments. Therefore, the identification of early indicators of SOM dynamics is crucial for implementing prompt corrective actions. The aim of this study was to evaluate the effects of sustainable management practices, such as cultivated crops (Pisum sativum and Lupinus albus), selected entomopathogenic and myco parasitic fungi (MEHA) (Trichoderma virens and Metarhizium brunneum), and lactic acid bacteria (LAB) on the labile fraction of the SOM pool (CLSOM) and identify potential early indicators. Our findings demonstrated that the type of crop and applied microorganisms (treatments) significantly affected the CLSOM in peas, and the crop growth stages affected the TOC in both pea and lupin. Growth stages also showed an impact on the CLSOM in lupin. Moreover, in both crops, the change in CLSOM correlated with changes in the SOM oxidation rate constant (k), carbon lability index (LI), carbon management index (CMI), and carbon enrichment ratio (ER). Conversely, changes in the TOC did not exhibit significant correlations, except for LI and CMI, which showed a positive correlation with the TOC in peas (p < 0.05). Furthermore, the separate application of MEHA and LAB on seeds or leaves resulted in increased SOM carbon pools compared with the combined application. The application of these beneficial microorganisms in pea and lupin crops showed potential in maintaining or increasing CLSOM, which can be assessed early through indicators such as k, LI, CMI, and ER. Contributing to the development of sustainable soil management strategies, future research should further investigate different crops and microorganisms—and the mechanisms underlying their observed relationships—and explore additional early indicators to refine and optimize sustainable agricultural practices.

The patchiness of soil 13C versus the uniformity of 15N distribution with geomorphic position provides evidence of erosion and accelerated organic matter turnover

Farming on hillslopes often affects the accumulation and loss of soil organic matter (SOM) depending on slope position and cropping patterns. Most hillslope studies focus on soil movement to characterize SOM turnover under erosive conditions. In this study, we trace erosion and characterize agronomic practices erosive impacts on SOM translocation and transformation along geomorphic positions. To achieve this, we assessed the horizontal distribution (upper 15 cm) and vertical distribution (to 100 cm profiles) of soil δ15N and δ13C isotope abundance individually. We mapped the spatial distribution of δ13C, δ15N, and SOM turnover indices as a novel approach to tracing erosion and degradation of SOM in the field. Except for tillage (conventional vs. reduced tillage), other individual agricultural practices (residue removal with no cover crop vs. retaining residuals, cover cropping, and fertilizer 0, 40, and 80 kg ha-1 nitrogen) caused no significant shifts in δ15N and δ13C values in topsoil (0–15 cm). Among the evaluated factors, topography and depth predicted soil δ15N and δ13C profiles. Trends in δ13C vs. δ15N showed a wider range of δ13C values in topsoil of upslope plots under reduced tillage, while in the depositional location, conventional tillage had the same effect. This suggests erosion under reduced tillage occurred. Erosion and accelerated decomposition gradually slowed δ13C enrichment with soil depth. Digital soil mapping approach depicted low continuity of δ13C vs. high continuity of δ15N with geomorphic position We attributed the intermediate δ13C values, and steeper slope of δ13C against logarithm of soil organic carbon (SOC) across the slope to erosion and high SOM turnover, particularly of recently added plant inputs. Current results support the prediction of intensive vs. conservation practices’ effects on upslope soil stability and the fate of SOM in both topsoil and at depth of sloping farmlands.

The effect of differences in soil water content on microbial and enzymatic properties across the soil profiles

The differences in soil water content across the soil profiles produce changes in soil microbial and enzymatic properties, which play a major role in the transformation of soil organic matter. Permanent water saturation contributes to the formation of gleyic/stagnic horizons which have reducing conditions, this leads to a depletion in soil oxygen and changes in soil properties. To assess the effect of water content, we compared soil properties in the gleyic/stagnic horizons to the oxidative layers, which occurred at the same/similar depth in other profiles. The enzymatic activity and the number of microbial groups were assessed in eight soil profiles located in central Poland.The studied properties responded differently to the water content. As expected, nitrate-reductase activity and the nitrate content were significantly higher in gleyic/stagnic than in oxidative conditions, while the opposite trend was found for phenol oxidase, urease, N-acetyl-glucosaminidase activity and the fungi number. No clear response in the total bacteria and facultative anaerobic bacteria (Bfa) count toward oxidation-reduction conditions was found. The dehydrogenases did not have a higher activity in the gleyic/stagnic as compared to the oxidative horizons and did not correlate significantly with the Bfa count. Differences in enzyme activities may be caused by the fact that the variation in frequency and duration of the reducing conditions in the soils may be insufficient to affect the short-term dynamics of these enzymes. The higher activity of some hydrolases in the reducing horizons may also be associated with the greater carbon and nitrogen content in these horizons.

Soil nitrogen dynamics in natural forest ecosystem: a review

Nitrogen (N) is an important component of the forest soils and plays a pivotal role in the ecosystem’s health, also in broadleaf and Moso bamboo (Phyllostachys edulis) forests. Nitrogen plays numerous functions in the production and transformation of soil organic matter (SOM) and alterations in the soil’s physicochemical and biological properties. Despite the extensive research on soil properties and microorganism diversity in broadleaf and Moso bamboo forests, we still know very little about N dynamics and its significance in broadleaf and Moso bamboo forests, or how various physical and environmental variables influence soil physicochemical, N dynamics, and biological attributes. This article provides a thorough overview of the role of N dynamics in broadleaf and Moso bamboo forests and changes in soil physicochemical properties processes by summarizing recent advances in our knowledge of forest soil microbial diversity, and carbon (C) and N sink in broadleaf and Moso bamboo forests. As broadleaf and Moso bamboo forests are very sensitive to little change, even a small change in these ecosystems can alter the overall N dynamics. Here, we dissect the soil ecology of broadleaf and Moso bamboo forests to provide insights into the possibilities and consequences of future studies of N dynamics in these ecosystems.

Distribution of Mercury in Drained Peatlands as the Effect of Secondary Transformation of Soil Organic Matter

Peat organic soils play a major role in the accumulation of soil organic matter (SOM) and the mercury (Hg) cycle. Large mercury resources in peatlands can be a source of methylmercury for many decades and centuries, even if deposition is significantly reduced. The organic matter of peatland soils drained for agricultural use is subject to secondary transformation, which may affect the accumulation and resources of mercury. The aim of our work is to assess the secondary transformation of organic matter in the soils of drained peatlands of the temperate climate zone and to examine whether it affects mercury resources and profile distribution in organic soils. Field research was conducted in peatlands located in eastern Poland. In the present study, evaluation of secondary transformations occurring after drainage was based on observations of soil morphological characteristics, physical and chemical properties as well as fractional composition of organic matter of the identified soil horizons (to depth 70 cm). Standard cold vapor atomic absorption spectrometry (CV-AAS) was used to measure the total mercury content. In our research, we found a significant effect of the secondary transformation of organic matter occurring in drained peatlands of the temperate climate zone on the total mercury content and stock in soils. The highest content and differentiation of mercury occurred in murshic horizons (up to a maximum depth of 43 cm). The average mercury content of the distinguished soil horizons is grouped in the following series (in μg kg−1): M1 (212.0) > M2 (182.8) > M3 (126.3) > Pt (84.9). The mercury stock, up to a depth of 70 cm in the tested soils, ranged from 17.5 to 39.6 mg m−2. As much as 82.2% of soil mercury was found in the upper murshic horizons. We found strong correlations between soil properties characteristically variable in the secondary transformation process and total mercury content. The increased content of humic substances in murshic horizons caused a significant increase in the total mercury content. Our research is of great importance for soil monitoring, as the amount of determined mercury was greatly influenced by the depth of sampling (up to 25 cm). The results of the research should be taken into account when planning the restoration of peatlands of the temperate climate zone. There is a potential risk that elevated mercury concentrations in the upper murshic horizons may be a source of methylmercury for a long period of time. In peat soils with a high concentration of mercury, the risk of contamination with this toxic metal should be determined before re-irrigation.

Unveiling Molecular Transformations of Soil Organic Matter after Remediation by Chemical Oxidation Based on ESI-FT-ICR-MS analysis

Remediation of soils contaminated with organic pollutants is often accomplished by chemical oxidation processes using oxidants such as persulfate or H2O2. However, it is unclear how different oxidants transform soil organic matter (SOM) and affect soil ecosystem services. Herein, two chemical oxidation technologies, Fenton reaction (FT) and base-activation of sodium persulfate (BP), were investigated to remediate diesel-polluted soils. The molecular transformation of SOM was analyzed using excitation–emission matrix fluorescence spectroscopy (EEM FS) and electrospray ionization coupled with Fourier transform ion cyclotron resonance mass spectrometry (ESI-FT-ICR-MS). Fulvic acid-like substances and lipids were consumed in both treatments, while the contents of lignin-like and tannin-like substances increased after BP treatment. The oxygen to carbon ratios (O/C), modified aromaticity index (AImod), and double bond equivalent (DBE) of SOM increased significantly in BP-treated soil, while these parameters decreased in FT-treated soil (FTS), suggesting the oxygen-containing, unsaturated and aromatic compounds were produced in BPS but removed in FTS. The increased cation exchange capacity (CEC) value (81.47 cmol/kg) and germination index of wheat seed (97%) for the SOM in BPS indicate the possible favorable effect of persulfate-based treatment on soil quality. Overall, this study advances mechanistic understanding of the effects of H2O2- and persulfate-based soil remediation technologies based on the molecular compositions of SOM and soil quality.

FT-IR spectroscopy analysis of HF-treated mineral soils, a direct approach for deciphering organo-mineral interactions

Soil organic matter (SOM) constitutes roughly 60% organic carbon (OC) and therefore plays a crucial role in regulating global climate. However, our understanding of the long-term dynamics of the soil carbon pool remains constrained by limitations in analytical approaches capable of providing high resolution molecular-level information from arguably the most complex biomaterial on the planet. In this contribution, we combine hydrofluoric acid (HF) treatment with a spectroscopic approach as a strategy to provide refined molecular-level information on the interactions between soil minerals and SOM. Critically, we have not seen the use of this combined approach anywhere in the literature and strongly believe that it could allow us to improve our overall understanding to the mechanisms and pathways that regulate SOM transformation. Results clearly illustrates which organic structures are preferentially adsorbed to soil minerals and are likely to be protected from degradation, as well as spatial co-variations of SOM with specific mineral components such as Al3+, Si4+ and dibasic cations such as Mg2+as a function of their importance in the interaction process.•Soil samples were collected from different land-use types in rural farming communities of the Upper Rio Grande Valley.•Samples were oven dried, disaggregated, sieved, treated with 10% HF, rinsed and oven dried.•Oven dried samples were subjected to Mid–infrared (4000–400 cm−1), XRD and ED-XRF analyses.