Abstract Soil moisture plays a critical role in influencing various facets of ecosystem dynamics. The preference for measuring soil moisture without physical intrusion has been desirable for precise assessments while minimizing disruptions to soil structural, hydraulic, and biological characteristics. In this study, we explored the potential of surface elastic waves as a proxy to estimate soil moisture profiles to a depth of 1.05 m at intervals of 0.1 m. We conducted a multichannel analysis of surface waves (MASW) survey and measured soil moisture at depths of 0.15 m and 0.35 m. To address the limited availability of soil moisture measurements, we developed a mechanistic soil moisture model as a substitute for measured soil moisture profiles. Our results showed that as soil moisture increased, the propagation of surface waves became more pronounced due to reduced frictional resistance. However, it was not straightforward to link measured surface wave responses and subsurface soil moisture profile. To address these challenges, we developed a convolutional neural network (CNN) with the inputs of the frequency-velocity and frequency-wavenumber images obtained from the measured surface waves. We found that the integration of MASW and CNN proved effective in estimating soil moisture profiles to a depth of 1.05 m at intervals of 0.1 m without causing disturbances to the soil (MAE = 0.0035 m3 m−3). This study suggested that the combined use of surface waves and CNN hold promise in measuring soil moisture profiles without physical disruptions. As such, the proposed approach could serve as a viable alternative to noninvasive soil moisture sensors.