Response Of Soil Microbial Communities Research Articles

The effects of livestock grazing on physicochemical properties and bacterial communities of perlite-rich soil.

Livestock grazing has been proposed as a cost-effective way to reclaim post-mining lands. It can enhance soil fertility and biodiversity, but its impacts on soil quality and microbial communities vary across soil types. Moreover, waste from grazing raises concerns about pathogens that could pose risks to animal and human health. This study investigated the effects of grazing on post-mining perlite-rich soil in central Thailand. A comparative analysis of soil physicochemical properties and bacterial diversity was conducted between grazed and ungrazed sites. Bacterial diversity was assessed using 16S amplicon sequencing. The perlite-rich soil was found to be sandy, acidic, and to have low nutritional content. Grazing significantly improved the soil texture and nutrient content, suggesting its potential as a cost-effective reclamation strategy. The 16S metagenomic sequencing analysis revealed that microbial communities were impacted by livestock grazing. Specifically, shifts in the dominant bacterial phyla were identified, with increases in Firmicutes and Chloroflexi and a decrease in Actinobacteria. Concerns about increased levels of pathogenic Enterobacteriaceae due to grazing were not substantiated in perlite-rich soil. These bacteria were consistently found at low levels in all soil samples, regardless of livestock grazing. This study also identified a diverse population of Streptomycetaceae, including previously uncharacterized strains/species. This finding could be valuable given that this bacterial family is known for producing antibiotics and other secondary metabolites. However, grazing adversely impacted the abundance and diversity of Streptomycetaceae in this specific soil type. In line with previous research, this study demonstrated that the response of soil microbial communities to grazing varies significantly depending on the soil type, with unique responses appearing to be associated with perlite-rich soil. This emphasizes the importance of soil-specific research in understanding how grazing affects microbial communities. Future research should focus on optimizing grazing practices for perlite-rich soil and characterizing the Streptomycetaceae community for potential antibiotic and secondary metabolite discovery. The obtained findings should ultimately contribute to sustainable post-mining reclamation through livestock grazing and the preservation of valuable microbial resources.

Temperature sensitivity quandary of soil microbial community structure in Tibetan alpine grasslands: A meta-analysis and field experiment

Soil microorganisms act as the primary decomposers in global terrestrial ecosystems. Whether climate warming will lead to the convergence of the temperature sensitivity of soil microbial community structure and the convergence of the responses of soil microbial community structure to warming remains controversial. This study explored how warming amplitude affected the temperature sensitivity of soil bacteria and fungi community structures, and how it influenced the responses of soil bacteria and fungi community structures to warming on the Qinghai-Tibet Plateau based on meta-analysis and a single-site warming experiment. The temperature sensitivity of soil microbial community structure did not consistently decline with increasing warming magnitude; instead, it even rose, which might be associated with the nonlinear relationships of the warming magnitude with the temperature sensitivity of ecological processes of soil microbial community assembly or the topological parameters of species co-occurrence network. Meta-analysis indicated that responses of soil microbial community to warming were independent of warming amplitude. However, the single-site warming experiment demonstrated that responses of soil microbial community to warming varied with warming amplitude. These inconsistent results might be attributed to distinct spatial scales, grassland types, climatic conditions and warming magnitudes between the single-site experiment and the meta-analysis. Therefore, the temperature sensitivity of soil microbial community and its response to climate warming cannot be simply characterized as monotonically decreasing or increasing in relation to increasing warming magnitude.

Enhanced indigenous bacteria-mediated bioremediation of aged petroleum-contaminated soil by Fenton pretreatment: Synergistic effect of soil environmental improvement and microbial community response

Due to the harsh soil environment and low microbial activity, the efficacy of indigenous bacteria-mediated bioremediation is often limited in aged petroleum-contaminated soils. In this study, Fenton pretreatment (H2O2: 200 ∼ 600 mmol/kg, H2O2: Fe2+ = 100: 1) was applied to improve the aged soil environment and rebuild the microbial community to enhance subsequent bioremediation. After pretreated by 400 mmol/kg H2O2 and 4 mmol/kg Fe2+ (T2), the removal efficiency of total petroleum hydrocarbons (TPHs) was elevated to 93.27 %, equivalent to 1.96-fold of the natural attenuation (CK). Additionally, the half-life of biodegradation was shorted to 45.57 d, representing a decrease to 0.29-fold that of CK. Correlation analysis revealed a radar plot comprising five indicators, including bacterial quantification (BQ), dehydrogenase (DHA), polyphenol oxidase (PPO), permeability coefficient (K), and bulk density coefficient (γ), all of which exhibited positive correlations with TPHs degradation. Compared to CK, Fenton pretreatment increased the richness and evenness of the microbial community during incubation, thus facilitating TPHs biodegradation. Moreover, Fenton pretreatment accelerated the shift of the dominant genus in T2 from Pseudomonas (0.599) to Pseudomonas (0.258), Nocardioides (0.109), Dietzia (0.157), and Stenotrophomonas (0.120) throughout the incubation. Based on the analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG), the metabolism and enzymatic functional genes related to the biodegradation of petroleum hydrocarbons in T2 were enhanced during incubation, accounting for the high removal efficiency of TPHs. These findings demonstrated that moderate Fenton pretreatment was an effective approach to stimulate indigenous bacteria for the enhanced biodegradation of aged petroleum-contaminated soil.

Soil moisture-dependent tire wear particles aging processes shift soil microbial communities and elevated nitrous oxide emission on drylands

Tire wear particles (TWPs) have been an emerging threat to the soil ecosystem, while impact of the TWPs aging on soil microbial communities remains poorly understood. This study investigated the dynamic responses of soil microbial communities to the TWPs aging under both wet and flooded conditions. We found that different soil moisture conditions resulted in distinct microbial community structures. Soil bacteria were more sensitive to wet conditions, while soil fungi were more sensitive to flooded conditions. The family Symbiobacteraceae was predominant in the TWP-sphere under both wet and flooded conditions after 60 days, followed by Brevibacillaceae. Notably, we observed that TWPs input significantly increased nitrous oxide (N2O) emission from dryland soil. Several taxa including Cyanobacteriales, Blastocatellaceae and Pyrinomonadaceae were identified as TWP-biomarkers in soils and potentially played significant roles in N2O emissions from drylands. Their responses to the TWPs input correlated closely with changes in the relative abundance of genes involved in ammonia oxidation (amoA/B), nitrite reduction (nirS/K) and N2O reduction (nosZ) in drylands. Our results demonstrate that soil moisture-dependent TWP aging influences N2O emission by altering both the associated microbial communities and the relevant genes.

Dynamic responses of soil microbial communities to seasonal freeze-thaw cycles in a temperate agroecosystem

Soil freeze-thaw cycles (FTCs) are common in temperate agricultural ecosystems during the non-growing season and are progressively influenced by climate change. The impact of these cycles on soil microbial communities, crucial for ecosystem functioning, varies under different agricultural management practices. Here, we investigated the dynamic changes in soil microbial communities in a Mollisol during seasonal FTCs and examined the effects of stover mulching and nitrogen fertilization. We revealed distinct responses between bacterial and fungal communities. The dominant bacterial phyla reacted differently to FTCs: for example, Proteobacteria responded opportunistically, Actinobacteria, Acidobacteria, Choroflexi and Gemmatimonadetes responded sensitively, and Saccharibacteria exhibited a tolerance response. In contrast, the fungal community composition remained relatively stable during FTCs, except for a decline in Glomeromycota. Certain bacterial OTUs acted as sensitive indicators of FTCs, forming keystone modules in the network that are closely linked to soil carbon, nitrogen content and potential functions. Additionally, neither stover mulching nor nitrogen fertilization significantly influenced microbial richness, diversity and potential functions. However, over time, more indicator species specific to these agricultural practices began to emerge within the networks and gradually occupied the central positions. Furthermore, our findings suggest that farming practices, by introducing keystone microbes and changing interspecies interactions (even without changing microbial richness and diversity), can enhance microbial community stability against FTC disturbances. Specifically, higher nitrogen input with stover removal promotes fungal stability during soil freezing, while lower nitrogen levels increase bacterial stability during soil thawing. Considering the fungal tolerance to FTCs, we recommend reducing nitrogen input for manipulating bacterial interactions, thereby enhancing overall microbial resilience to seasonal FTCs. In summary, our research reveals that microbial responses to seasonal FTCs are reshaped through land management to support ecosystem functions under environmental stress amid climate change.

Dual roles of microbes in mediating soil carbon dynamics in response to warming

Understanding the alterations in soil microbial communities in response to climate warming and their controls over soil carbon (C) processes is crucial for projecting permafrost C-climate feedback. However, previous studies have mainly focused on microorganism-mediated soil C release, and little is known about whether and how climate warming affects microbial anabolism and the subsequent C input in permafrost regions. Here, based on a more than half-decade of in situ warming experiment, we show that compared with ambient control, warming significantly reduces microbial C use efficiency and enhances microbial network complexity, which promotes soil heterotrophic respiration. Meanwhile, microbial necromass markedly accumulates under warming likely due to preferential microbial decomposition of plant-derived C, further leading to the increase in mineral-associated organic C. Altogether, these results demonstrate dual roles of microbes in affecting soil C release and stabilization, implying that permafrost C-climate feedback would weaken over time with dampened response of microbial respiration and increased proportion of stable C pool.

Seasonal response of soil microbial community structure and life history strategies to winter snow cover change in a temperate forest

Snow cover provides a thermally stable and humid soil environment and thereby regulates soil microbial communities and biogeochemical cycling. A warmer world with large reductions in snow cover and earlier spring snowmelt may disrupt this stability and associated ecosystem functioning. Yet, little is known about the response of soil microbial communities to decreased snowpack and potential carry-over effects beyond the snow cover period. Herein, we tested this response by conducting a snowpack manipulation experiment (control, addition, and removal) in a temperate forest. Our results showed that fungi were more sensitive to changes in snowpack. Thicker snowpack increased the diversity of fungi, but had weak effects on the diversity of bacteria in winter. Thickening snow cover promoted the ratio of fungi to bacteria abundance across the year, and such relative increase in fungi abundance was largely driven by Basidiomycota phyla (Agaricomycetes class). Increased snowpack decreased soil nitrate concentration, and produced carry-over biogeochemical effects evidenced by increased summer β-1,4-glucosidase and N-acetyl-β-glucosaminidase activities. On a seasonal scale, microbial biomass peaked at both winter and summer; winter microbial community was fungi dominated, while bacteria dominated in summer. The abundances of bacterial phyla had greater seasonal variation than fungal phyla. Specifically, Actinobacteria had greater dominance in winter than in summer, while Acidobacteria, Proteobacteria, and Verrucomicrobia had greater abundance in summer than in winter. Microbial high yield-resource acquisition-stress tolerance life history strategies showed significant seasonal tradeoffs, i.e., resource acquisition and stress tolerance strategies dominated in summer, while high yield strategy dominated in winter. Overall, our findings underline that climate-induced reductions in snow cover can disrupt soil biogeochemical cycling also beyond the snow cover period due to shifts in soil microbial community structure and life history strategies.

Response of Yam Yield and Soil Microbial Communities to Soil Fumigation and Substrate Cultivation

Response of Yam Yield and Soil Microbial Communities to Soil Fumigation and Substrate Cultivation

Effects of water and fertilizer regulation on soil microbial community, fruit nutrients, and saponin content of Panax notoginseng: A three years field experiment

In pursuit of maximum yield and economic benefits of Panax notoginseng, farmers usually apply excessive fertilizer and irrigation. Which easily induce the decline of Panax notoginseng quality, fertilizer and water use efficiencies and soil health. From 2021–2023, a field experiment was conducted in Dali Village, Luxi County, Honghe Prefecture, Yunnan Province, to study the response of soil microbial community, root nutrient content, and ginsenoside content of Panax notoginseng to different water and fertilizer regulation. The experiment including three irrigation levels (F1: 120 mm, F2: 240 mm, and F3: 360 mm) four fertilization rates(F1: 48 kg ha−1, F2: 72 kg ha−1, F2: 96 kg ha−1, and 120 kg ha−1),and a CK treatment (no fertilizer and no irrigation) The results showed that the average N, P, and K contents across all treatments were greater in 2023 than those in 2021 and 2022. W3F4 treatment significantly increased N absorption. W2F4 treatment significantly increased P and K absorption. W2F4 treatment significantly increased the Panax notoginseng yield, and W3F2 treatment significantly increased the saponin content. The Panax notoginseng yield ranged from 1165 to 3006 kg∙ha−1, with a maximum average yield in 2023. The Re content averaged 81.5 % in 2023 over 2021, and the highest Re content in W3F2 treatment in 2023 was 108.54 mg∙g−1. In 2023, W2F3 treatment had the highest R1 content of 15.34 mg∙g−1, W2F3 treatment had the highest content of Rg1 of 44.65 mg∙g−1, and W3F2 treatment had the highest Rb1 content of 52.52 mg∙g−1. From 2021–2023, the total number of unique OTUs in W1F1 was the largest, out followed by W3F2, W3F4, and W3F1. The treatment that significantly increased the bacterial Chao1 index was W3F1 and W2F2 in 2021, W3F3, W2F1, W2F1 and W2F3 in 2022, and W2F3 and W2F4 in 2023. The Shannon nor Simpson indices were not varied significantly from CK. At the phylum level, W1F3 in 2021 and W3F1 in 2022 and 2023 improved the relative abundance of Proteobacteria, Acidobacteriota At the genus level, W1F1 in 2021 and 2023 improved the relative abundance of Vicinamibacteraceae_norank and Vicinamibacterales_norank. LEfSe analysis of soil microbial communities showed the most divergent species in 2021 with W3F2, W1F1 in 2022, and W2F1 in 2023. Different water and fertilizer treatments affected the total OTU number of bacterial communities and changed the bacterial community structure. W3F1 and W2F3 treatments significantly increased soil bacterial diversity, and soil microbial diversity regulated plants N as well as R1 and Rg1 content, and the quality of Panax notoginseng is related to microbial diversity. N, P, K, and R1 had a significant positive correlation with microbial community diversity (P<0.05). The W1F1 treatment communities were relatively abundant, and the community species showed high similarity in W3F1 and W2F3.

Differential responses of soil bacteria, fungi and protists to root exudates and temperature

The impact of climate warming on soil microbes has been well documented, with studies revealing its effects on diversity, community structure and network dynamics. However, the consistency of soil microbial community assembly, particularly in response to diverse plant root exudates under varying temperature conditions, remains an unresolved issue. To address this issue, we employed a growth chamber to integrate temperature and root exudates in a controlled experiment to examine the response of soil bacteria, fungi, and protists. Our findings revealed that temperature independently regulated microbial diversity, with distinct patterns observed among bacteria, fungi, and protists. Both root exudates and temperature significantly influenced microbial community composition, yet interpretations of these factors varied among prokaryotes and eukaryotes. In addition to phototrophic bacteria and protists, as well as protistan consumers, root exudates determined to varying degrees the enrichment of other microbial functional guilds at specific temperatures. The effects of temperature and root exudates on microbial co-occurrence patterns were interdependent; root exudates primarily simplified the network at low and high temperatures, while responses to temperature varied between single and mixed exudate treatments. Moreover, temperature altered the composition of keystone species within the microbial network, while root exudates led to a decrease in their number. These results emphasize the substantial impact of plant root exudates on soil microbial community responses to temperature, underscoring the necessity for future climate change research to incorporate additional environmental variables.

Fertilization regime changes rhizosphere microbial community assembly and interaction in Phoebe bournei plantations

Fertilizer input is one of the effective forest management practices, which improves soil nutrients and microbial community compositions and promotes forest productivity. However, few studies have explored the response of rhizosphere soil microbial communities to various fertilization regimes across seasonal dynamics. Here, we collected the rhizosphere soil samples from Phoebe bournei plantations to investigate the response of community assemblages and microbial interactions of the soil microbiome to the short-term application of four typical fertilizer practices (including chemical fertilizer (CF), organic fertilizer (OF), compound microbial fertilizer (CMF), and no fertilizer control (CK)). The amendments of organic fertilizer and compound microbial fertilizer altered the composition of rhizosphere soil bacterial and fungal communities, respectively. The fertilization regime significantly affected bacterial diversity rather than fungal diversity, and rhizosphere fungi responded more sensitively than bacteria to season. Fertilization-induced fungal networks were more complex than bacterial networks. Stochastic processes governed both rhizosphere soil bacterial and fungal communities, and drift and dispersal limitation dominated soil fungal and bacterial communities, respectively. Collectively, these findings demonstrate contrasting responses to community assemblages and interactions of rhizosphere bacteria and fungi to fertilizer practices. The application of organic fertilization strengthens microbial interactions and changes the succession of key taxa in the rhizosphere habitat.Key points• Fertilization altered the key taxa and microbial interaction• Organic fertilizer facilitated the turnover of rhizosphere microbial communities• Stochasticity governed soil fungal and bacterial community assembly

The potential of magnetic biochar prepared by a solvent-free method as a soil amendment: Metal immobilization performance, soil microbial co-occurrence network and community assembly mechanism

Magnetic biochar (MBC) is widely recognized as an effective soil amendment for the immobilization of heavy metals in soils. However, the most commonly used methods currently for manufacturing MBC necessitate the use of iron salt solutions, leading to energy consumption for dehydration and potential environmental risks. Here, we fabricated a magnetic biochar based on the solvent-free method and applied it as a soil passivator at a rate of 5 % (w/w) for 90 days. The metal immobilization performance of MBC was investigated, together with its soil micro-ecological effects including the impacts of MBC application on soil microbial community diversity, composition, co-occurrence network pattern and assembly mechanism. The results showed that MBC treatment significantly decreased the DTPA-extractable Cd and Zn by 54.1 % and 59.5 % (P<0.05) after the 90-day incubation, respectively, higher than that of biochar (BC) treatment (25.6 % for Cd and 50.4 % for Zn). The transformation of Cd, Zn and Pb from labile fractions to residual fraction was facilitated in MBC treatment. Besides, MBC application significantly increased soil pH, soil organic matter content and cation exchange capacity (P<0.05). The addition of MBC considerably altered the soil bacterial community diversity and composition. Both soil environmental variables and bioavailability of metals shaped microbial communities, while the latter explained more. Compared to CK, the complexity and stability of the co-occurrence network in MBC-amended soil were enhanced. Null model analysis implied that the microbial community assembly was governed by the stochastic process in MBC treatment, while the deterministic process was the dominant mechanism initially. Overall, our findings provide insight into the ecological mechanisms and interactions of soil microbial communities in response to MBC application and demonstrate that MBC is a promising amendment for metal-contaminated soil remediation.

Microbial communities mediate the effect of cover cropping on soil ecosystem functions under precipitation reduction in an agroecosystem

Cover cropping is a sustainable agricultural practice that profoundly influences soil microbial communities and ecosystem functions. However, the responses of soil ecosystem functions and microbial communities to cover cropping under the projected changes in precipitation, remain largely unexplored. To address this gap, a field experiment with cover cropping (control, hairy vetch, ryegrass, and hairy vetch plus ryegrass) and precipitation reduction (ambient precipitation and 50 % reduction in ambient precipitation) treatments was conducted from 2018 to 2020 in an agroecosystem located in the Guanzhong Plain of China. Soil ecosystem functions related to nutrient storage, nutrient cycling, and organic matter decomposition were measured to assess the soil multifunctionality index and bacterial and fungal communities were determined by Illumina NovaSeq sequencing. The results indicated that cover cropping enhanced soil multifunctionality index, and reduced precipitation strengthened this effect. Microbial community composition, rather than microbial diversity, was significantly altered by cover cropping regardless of precipitation reduction. Cover cropping increased the microbial network complexity and stability, but this effect was dampened by reduced precipitation. The microbial community composition and network complexity significantly and positively correlated with soil multifunctionality index under ambient and reduced precipitation conditions. Linear regression analyses and structural equation models collectively demonstrated that the increase in soil multifunctionality index was attributed to cover cropping-induced changes in microbial community composition and network complexity, irrespective of precipitation reduction. This study highlights the crucial role of microbial communities in driving the response of soil multifunctionality to cover cropping in the context of reduced precipitation, which has important implications for agricultural management and sustainability under future climate change scenarios.

Response of Soil Fungal Community in Coastal Saline Soil to Short-Term Water Management Combined with Bio-Organic Fertilizer

This study aimed to elucidate the response of soil microbial communities to saline soil amelioration via biological organic fertilizer. A year-long experiment was conducted on coastal saline soil, employing water and fertilizer strategies. Three treatments were compared: dry field (control, CK), paddy field (W), and combined dry and irrigated fields with biological organic fertilizer (BW). Soil DNA was extracted and sequenced using high-throughput methods, revealing significant reductions in soil electrical conductivity (EC) and pH with W and BW treatments. Moreover, the BW treatment notably increased soil organic carbon content by 17.2%, as well as soil urease and alkaline phosphatase activity. Fungal community richness increased, with the BW treatment showing a 36% rise in the ACE index and a 24% increase in the Shannon index, while the Simpson index decreased by 59%. Dominant fungal phyla were Ascomycota, Mortierellomycota, and Basidiomycota, with Basidiomycota prevailing at the genus level. Redundancy analysis (RDA) indicated that soil pH, EC, and organic carbon were key determinants of fungal community distribution, with the BW treatment correlating negatively with pH and salt and positively with soil organic carbon (SOC). Fungal functional groups varied among treatments, with saprophytic fungi predominating, but the BW treatment showed a higher relative abundance of animal pathogenic fungi. In summary, the integration of biological organic fertilizer with flooding ameliorates soil properties and influences the changes in soil fungal community structure and function in the short term. These results could enhance the scientific basis for the efficient utilization and development of saline soil resources in coastal areas.

Responses of soil fungal and bacterial communities to long-term organic and inorganic nitrogenous fertilizers in an alpine agriculture

Although nitrogen fertilizer is an important measure to increase grain yield, response of soil microbial community to nitrogen fertilizer is still unclear in alpine regions. Based on a long-term (>10 years) nitrogen fertilizer experiment (control, CF: chemical fertilizer, SM: sheep manure; CS: chemical fertilizer + sheep manure) in an alpine agroecosystem of the Lhasa, Xizang, responses of soil bacteria and fungi communities to nitrogen fertilizer was investigated. The CF treatment reduced fungi operational taxonomic unit (OTU) by 13.08 %, phylogenetic diversity by 11.13 % at 10–20 cm, but increased fungi guild number at 0–10 cm by 17.71 %. The SM treatment reduced fungi OTU at 10–20 cm by 11.82 %. Compared to CF and SM treatments, CS treatment had stronger positive effects on bacterial α-diversity, considering that CS treatment but not CF and SM treatments increased bacterial mean nearest taxon distance, species Shannon and Simpson at 10–20 cm. The CF, SM and CS treatments altered fungal community composition at 0–10 and 10–20 cm, bacterial community composition at 10–20 cm, and bacterial species composition at 0–10 cm. The CF and CS treatments altered bacterial phylogenetic composition at 0–10 cm, and the SM and CS treatments altered bacterial functional composition at 0–10 cm. The decreased magnitude of the relative abundance of symbiotroph fungi caused by CS treatment (90.44 %) was stronger than that (65.14 % and 53.62 %) caused by CF and SM treatments at 10–20 cm. Therefore, the SM and CS treatments had stronger effects on soil bacterial functional composition, but the CF treatment had stronger effects on fungal α-diversity. Compared with single application of organic or inorganic nitrogen fertilizer, mixed application of organic and inorganic nitrogen fertilizer was more beneficial to the maintenance and improvement of soil bacterial diversity, but caused more reduction of soil symbiotic fungi and in turn greater potential risk. These scientific findings observed by this study can provide guidance for fertilizer management and soil fertility improvement.

Differential Responses of Bacterial and Fungal Community Structure in Soil to Nitrogen Deposition in Two Planted Forests in Southwest China in Relation to pH

Increased nitrogen deposition profoundly impacts ecosystem nutrient cycling and poses a significant ecological challenge. Soil microorganisms are vital for carbon and nutrient cycling in ecosystems; however, the response of soil microbial communities in subtropical planted coniferous forests to nitrogen deposition remains poorly understood. This study carried out a four-year nitrogen addition experiment in the subtropical montane forests of central Yunnan to explore the microbial community dynamics and the primary regulatory factors in two coniferous forests (P. yunnanensis Franch. and P. armandii Franch.) under prolonged nitrogen addition. We observed that nitrogen addition elicited different responses in soil bacterial and fungal communities between the two forest types. In P. yunnanensis Franch. plantations, nitrogen supplementation notably reduced soil bacterial α-diversity but increased fungal diversity. In contrast, P. armandii Franch. forests showed the opposite trends, indicating stand-specific differences. Nitrogen addition also led to significant changes in soil nutrient dynamics, increasing soil pH in P. yunnanensis Franch. forests and decreasing it in P. armandii Franch. forests. These changes in soil nutrients significantly affected the diversity, community structure, and network interactions of soil microbial communities, with distinct responses noted between stands. Specifically, nitrogen addition significantly influenced the β-diversity of fungal communities more than that of bacterial communities. It also reduced the complexity of bacterial interspecies interactions in P. yunnanensis Franch. forests while enhancing it in P. armandii Franch. forests. Conversely, low levels of nitrogen addition improved the stability of fungal networks in both forest types. Using random forest and structural equation modeling, soil pH, NH4+-N, and total nitrogen (TN) were identified as key factors regulating bacterial and fungal communities after nitrogen addition. The varied soil nutrient conditions led to different responses in microbial diversity to nitrogen deposition, with nitrogen treatments primarily shaping microbial communities through changes in soil pH and nitrogen availability. This study provides essential insights into the scientific and sustainable management of subtropical plantation forest ecosystems.

Three-year field study on the temporal response of soil microbial communities and functions to PFOA exposure

Contamination of per- and polyfluoroalkyl substances (PFAS) poses a significant threat to soil ecosystem health, yet there remains a lack of understanding regarding the responses of soil microbial communities to prolonged PFAS exposure in field conditions. This study involved a three-year field investigation to track changes in microbial communities and functions in soil subjected to the contamination of a primary PFAS, perfluorooctanoic acid (PFOA). Results showed that PFOA exposure altered soil bacterial and fungal communities in terms of diversity, composition, and structure. Notably, certain bacterial communities with a delayed reaction to PFOA contamination showed the most significant response after one year of exposure. Fungal communities were sensitive to PFOA in soil, exhibiting significant responses within just four months of exposure. After two years, the impact of PFOA on both bacterial and fungal communities was lessened, likely due to the long-term adaptation of microbial communities to PFOA. Moreover, PFOA exposure notably inhibited alkaline phosphatase activity and reduced certain phosphorus cycling-related functional genes after three years of exposure, suggesting potential disruptions in soil fertility. These new insights advance our understanding of the long-term effects of PFOA on soil microbial communities and functions at a field scale.

Soil microbial community and chemical properties response to blueberry–soybean intercropping system

Soil microbial community and chemical properties response to blueberry–soybean intercropping system

Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost.

As the Arctic warms, thawing permafrost unlocks carbon, potentially accelerating climate change by releasing greenhouse gases. Our research delves into the underlying biogeochemical processes likely mediated by the soil microbial community in response to the wet and anaerobic conditions, akin to an Arctic summer thaw. We observed a significant shift in the microbial community post-thaw, with fermentative bacteria like Firmicutes and Bacteroidota taking over and switching to different fermentation pathways. The dominance of iron and sulfate-reducing bacteria likely constrained methane production in the thawing permafrost. Slow-growing microbes outweighed fast-growing ones, even after thaw, upending the expectation that rapid microbial responses to dominate after permafrost thaws. This research highlights the nuanced and complex interactions within Arctic soil microbial communities and underscores the challenges in predicting microbial response to environmental change.

Short-Term Response of Soil Microbial Community and Soil Biochemical Properties to Soybean Intercropping in a Cassava-Based Cropping System

A cassava-based cropping system study assessed the short-term response of soil chemical and biochemical properties and soil microbial communities to soybean intercropping. Two soybean varieties (‘Select Manchuria’ and ‘Tiwala 12’) were tested as intercrops. The treatments did not affect the soil’s chemical (pH, OM, N, P, K) and biochemical (basal respiration and dehydrogenase and urease enzyme activities) properties after one cropping period. Amplicon sequencing analysis found that intercropping promoted the abundance of bacterial orders Actinomycetales, Solibacterales, Sphingomonadales, and Rhodospirillales. These groups play active roles in organic matter decomposition and can potentially improve the soil quality in an area by enhancing the soil’s organic matter content. In terms of community analysis, principal coordinate analysis (PCoA) and redundancy analysis (RDA) showed separation between mono and intercropping systems, while ANOSIM and PEMANOVA did not detect any significance between varieties and cropping systems for both bacterial and fungal data. These results suggest that, in the short term, introduction of soybean in a cassava-based cropping system affects selected microbial groups, but the overall influence in the microbial community is not distinctly detected.