Soil Microbes Research Articles

Non-flooding conditions caused by water table drawdown alter microbial network complexity and decrease multifunctionality in alpine wetland soils

Several soil functions of alpine wetland depend on microbial communities, including carbon storage and nutrient cycling, and soil microbes are highly sensitive to hydrological conditions. Wetland degradation is often accompanied by a decline in water table. With the water table drawdown, the effects of microbial network complexity on various soil functions remain insufficiently understood. In this research, we quantified soil multifunctionality of flooded and non-flooded sites in the Lalu Wetland on the Tibetan Plateau. We employed high-throughput sequencing to investigate the microbial community responses to water table depth changes, as well as the relationships between microbial network properties and soil multifunctionality. Our findings revealed a substantial reduction in soil multifunctionality at both surface and subsurface soil layers (0–20 cm and 20–40 cm) in non-flooded sites compared to flooded sites. The α-diversity of bacteria in the surface soil of non-flooded sites was significantly lower than that in flooded sites. Microbial network properties (including the number of nodes, number of edges, average degree, density, and modularity of co-occurrence networks) exhibited significant correlations with soil multifunctionality. This study underscores the adverse impact of non-flooded conditions resulting from water table drawdown on soil multifunctionality in alpine wetland soils, driven by alterations in microbial community structure. Additionally, we identified soil pH and moisture content as pivotal abiotic factors influencing soil multifunctionality, with microbial network complexity emerging as a valuable predictor of multifunctionality.

Modeling microbial carbon fluxes and stocks in global soils from 1901 to 2016

Abstract. Soil microbes play a crucial role in the carbon (C) cycle; however, they have been overlooked in predicting the terrestrial C cycle. We applied a microbial-explicit Earth system model – the Community Land Model-Microbe (CLM-Microbe) – to investigate the dynamics of soil microbes during 1901 to 2016. The CLM-Microbe model was able to reproduce the variations of gross (GPP) and net (NPP) primary productivity, heterotrophic (HR) and soil (SR) respiration, microbial (MBC) biomass C in fungi (FBC) and bacteria (BBC) in the top 30 cm and 1 m, and dissolved (DOC) and soil organic C (SOC) in the top 30 cm and 1 m during 1901–2016. During the study period, simulated C variables increased by approximately 12 PgC yr−1 for HR, 25 PgC yr−1 for SR, 1.0 PgC for FBC and 0.4 PgC for BBC in 0–30 cm, and 1.2 PgC for FBC and 0.7 PgC for BBC in 0–1 m. Increases in microbial C fluxes and pools were widely found, particularly at high latitudes and in equatorial regions, but we also observed their decreases in some grids. Overall, the area-weighted averages of HR, SR, FBC, and BBC in the top 1 m were significantly correlated with those of soil moisture and soil temperature in the top 1 m. These results suggested that microbial C fluxes and pools were jointly governed by vegetation C input and soil temperature and moisture. Our simulations revealed the spatial and temporal patterns of microbial C fluxes and pools in response to environmental change, laying the foundation for an improved understanding of soil microbial roles in the global terrestrial C cycle.

Identification of Secondary Metabolites from Actinomycetes Isolated from the Hilly Region of Nepal

Actinomycetes are a unique class of Gram-positive bacteria with a fungus-like filamentous mycelium. They are often called ‘antibiotics factories’ because they can produce many potent secondary metabolites. At present, multidrug-resistant (MDR) pathogens are the main problem for humans and animals and to overcome this problem, more potent antibiotics are urgently required. Fortunately, Nepal has great geographical and climatic diversity serving as a home for various actinomycetes. This study identified several actinomycetes using morphological and biochemical assays from seven soil samples collected from different elevations in Nepal. The primary objective of this study was to screen the potent metabolites-producing actinomycetes. For this purpose, antimicrobial assays of seven isolates were carried out against Escherichia coli ATCC 25922, Salmonella typhi ATCC 14028, Shigella sonnei ATCC 25931, and Staphylococcus aureus ATCC 43300. The sample BT36 demonstrated the highest zone of inhibition against the tested microorganisms among others. Similarly, minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of all isolates were carried out. Among them, the MIC of samples BT36, PT7, and AB1 were found to be 1.952 mg/mL, 0.012 mg/mL, and 0.029 mg/mL, respectively. Ethyl acetate extracts of resulting potent isolates PT7 and AB1 were subjected to mass spectrometric analysis. A total of 22 bioactive compounds were annotated from liquid chromatography-high resolution mass spectroscopy (LC-HRMS), including epopromycin A, myxopyronin B, gilvocarcin HE, and okilactomycin A. It is concluded that this study will be useful in setting up a strategy to isolate useful secondary metabolites from soil microbes from the hilly region of Nepal.

Prairie restoration promotes the abundance and diversity of mutualistic arbuscular mycorrhizal fungi.

Predicting how biological communities assemble in restored ecosystems can assist in conservation efforts, but most research has focused on plants, with relatively little attention paid to soil microbial organisms that plants interact with. Arbuscular mycorrhizal (AM) fungi are an ecologically significant functional group of soil microbes that form mutualistic symbioses with plants and could therefore respond positively to plant community restoration. To evaluate the effects of plant community restoration on AM fungi, we compared AM fungal abundance, species richness, and community composition of five annually cultivated, conventionally managed agricultural fields with paired adjacent retired agricultural fields that had undergone prairie restoration 5-9 years prior to sampling. We hypothesized that restoration stimulates AM fungal abundance and species richness, particularly for disturbance-sensitive taxa, and that gains of new taxa would not displace AM fungal species present prior to restoration due to legacy effects. AM fungal abundance was quantified by measuring soil spore density and root colonization. AM fungal species richness and community composition were determined in soils and plant roots using DNA high-throughput sequencing. Soil spore density was 2.3 times higher in restored prairies compared to agricultural fields, but AM fungal root colonization did not differ between land use types. AM fungal species richness was 2.7 and 1.4 times higher in restored prairies versus agricultural fields for soil and roots, respectively. The abundance of Glomeraceae, a disturbance-tolerant family, decreased by 25% from agricultural to restored prairie soils but did not differ in plant roots. The abundance of Claroideoglomeraceae and Diversisporaceae, both disturbance-sensitive families, was 4.6 and 3.2 times higher in restored prairie versus agricultural soils, respectively. Species turnover was higher than expected relative to a null model, indicating that AM fungal species were gained by replacement. Our findings demonstrate that restoration can promote a relatively rapid increase in the abundance and diversity of soil microbial communities that had been degraded by decades of intensive land use, and community compositional change can be predicted by the disturbance tolerance of soil microbial taxonomic and functional groups.

Soil microbial identity explains home-field advantage for litter decomposition.

Unraveling the mechanisms of home-field advantage (HFA) is essential to gain a complete understanding of litter decomposition processes. However, knowledge of the relationships between HFA effects and microbial communities is lacking. To examine HFA effects on litter decomposition, we identified the microbial communities and conducted a reciprocal transplant experiment, including all possible combinations of soil and litter, between sites at two elevations in cool-temperate forests. Soil origin, rather than HFA, was an important factor in controlling litter decomposition processes. Microbiome-wide association analyses identified litter fungi and bacteria specific to the source soil, which completely differed at a low taxonomic level between litter types. The relative abundance of these microbes specific to source soil was positively correlated with litter mass loss. The results indicated that the unique relationships between plant litter and soil microbes through plant-soil linkages drive litter decomposition processes. In the short term, soil disturbances resulting from land-use changes have the potential to disrupt the effect of soil origin and hinder the advancement of litter decomposition. These findings contribute to an understanding of HFA mechanisms and the impacts of land-use change on decomposition processes in forest ecosystems.

Limited dependence on soil nitrogen fixation as subtropical forests develop

Soil nitrogen (N) fixation, driven by microbial reactions, is critical to support the entrance of nitrogen in nutrient poor and pioneer ecosystems. However, how and why N fixation and soil diazotrophs evolve as forests develop remain poorly understood. Here, we used a 60-year forest rewilding chronosequence and found that soil N fixation activity gradually decreased with increasing forest age, experiencing dramatic drops of 64.8% in intermediate stages and 93.0% in the oldest forests. Further analyses revealed loses in diazotrophic diversity and a significant reduction in the abundance of important diazotrophs (e.g., Desulfovibrio and Pseudomonas) as forest develops. This reduction in N fixation, and associated shifts in soil microbes, was driven by acidification and increases in N content during forest succession. Our results provide new insights on the life history of one of the most important groups of soil organisms in terrestrial ecosystems, with consequences for understanding the buildup of nutrients as forest soil develops.

Applying Hydrochar Affects Soil Carbon Dynamics by Altering the Characteristics of Soil Aggregates and Microbes

Hydrochar as a carbon-based fertiliser is hypothesised to permanently improve soils by modifying soil carbon quality through the regulation of soil organic carbon dynamics, aggregation properties and microbial diversity. However, the interactions between soil organic carbon (SOC) molecular structure, soil aggregates and soil microbial communities as a result of hydrochar application have not been fully elucidated. In this study, the use of hydrochar derived from duck farm biomass waste for a maize cultivation experiment verified that hydrochar had a promoting effect on maize growth, effectively increasing the nutrient supply to the soil. The application of hydrochar increased the soil organic carbon content by 78 to 253 per cent, which was dominated by CHON-type lignin, carbohydrates and condensed aromatic structural compounds. Meanwhile, hydrochar had a significant effect on both soil aromatic structures and oxygenated functional groups, forming more soil macroaggregates. In addition, hydrochar had a positive effect on soil bacterial abundance. This study suggests that the key mechanism by which hydrochar regulates soil carbon dynamics is mainly through the stabilising effect of hydrochar on macroaggregates while increasing the abundance of carbon-related microscopic bacteria. These results will help to elucidate the potential effects of aqueous carbon on the biogeochemical cycling of carbon in soils.

Multi-amplicon nitrogen cycling gene standard: An innovative approach for quantifying N-transforming soil microbes in terrestrial ecosystems

Agriculture accounts for nearly three-fourths of all nitrous oxide (N2O) anthropogenic emissions, a potent greenhouse gas (GHG). Improvements in agricultural management practices are critical for improving plant nitrogen (N) use efficiency and reducing N2O emissions. While implementing “climate-smart” management can reduce N2O emissions, building a linkage between these emissions and the N-cycling microbes that drive them will require N-cycling gene assays that are cost-effective, practical, and accessible to climate-smart researchers. In a recent study, a group of researchers demonstrated the suitability of synthetic oligonucleotides to serve as real-time quantitative PCR (qPCR) standards for quantifying microbial genes in soils. While this study is not based on that study, our results complement their findings and offer fresh insights into this novel methodology. Here, we describe an innovative approach that provides precision in the absolute quantification of five N-transforming target genes (AOB amoA, AOA amoA, nirK, nirS, and nosZ) in soils. Similar to the aforementioned study, our method obviates the cost-intensive aspects of traditional qPCR methods for preparing standard curves in soil microbial ecology (e.g., gel purification of PCR products and in-vivo cloning of plasmids) and is capable of being extended to any biochemical system, or environment of interest. Additionally, our qPCR approach provides several advantages: it utilizes a single multi-amplicon synthetic oligonucleotide, requires only a single dilution series and one stock solution to quantify all gene targets, and contains a non-edaphic gene (ZIKV) that can serve as a soil spike to determine DNA extraction efficiency and DNA recovery estimates. Furthermore, our protocol mitigates PCR inhibition from soil-derived substances using a modified DNA extraction protocol and inhibitor-tolerant polymerase. Ultimately, our work aims to reduce the technical burden on non-biologists/biochemists when conducting soil microbiological assays, support the development of climate mediation practices, and advance climate-smart agriculture goals.

Changes in soil microbial diversity under present land degradation scenario

Soil biological characteristics are drastically altered by land degradation. Degradation may reduce the number of microorganisms in the soil. Multiple activities and services provided by grassland ecosystems are impacted by land use change because of the resulting shifts in plant community composition and soil characteristics. A large body of research has examined the geographical and temporal dynamics of bacterial community structure and bacterial responses to human management in grassland ecosystems. As one of the most consequential environmental shifts occurring today, land use modification can affect microbial communities through modifying soil environmental parameters, nutritional conditions, and biological interactions. Whereas, soil microbes play crucial roles in nutrient cycling, organic matter decomposition, disease suppression, and overall soil health. Land degradation practices, such as deforestation, overgrazing, intensive agriculture, and improper land management, can disrupt the balance and diversity of soil microbial communities, leading to negative consequences for ecosystem functioning. To mitigate the negative effects of land degradation on soil microbial communities, sustainable land management practices should be adopted. These practices include soil conservation, reforestation, crop rotation, reduced tillage, organic farming methods, and proper nutrient management. By promoting soil health and restoring ecosystem processes, these approaches can help rebuild and maintain diverse and functional soil microbial communities.The purpose of this review is twofold: (1) to assess the diversity and composition of soil microorganisms in response to distinct land-use scenarios; and (2) to compare the relative importance of environmental factors driving these variations.

Organic Farming vs. Integrated Nutrient Management: A Comparative Review of Agricultural Productivity and Sustainability

In an era where sustainable agriculture is crucial for global food security and environmental preservation, organic farming and Integrated Nutrient Management (INM) have emerged as leading practices. This review paper offers a comprehensive comparison of these two approaches, focusing on their impact on agricultural productivity and sustainability. Organic farming, with its emphasis on reducing the use of chemical fertilizers, pesticides, growth hormones, and feed additives, aligns closely with the principles of sustainability. It enhances food quality, promotes soil health, and mitigates adverse environmental effects by encouraging natural recovery cycles. However, organic farming's limitations, such as lower yields and a more labour-intensive approach have prompted interest in innovative solutions that blend organic practices with modern technologies. Integrated Nutrient Management (INM) presents a compelling alternative. By combining organic, inorganic, and biological nutrient sources, INM seeks to optimize nutrient use efficiency and maintain soil health. This approach offers a flexible nutrient management strategy, balancing organic and inorganic inputs to maintain crop productivity while reducing environmental impact. Studies have shown that INM can improve soil properties, such as bulk density, porosity, and water-holding capacity, leading to enhanced crop yields and lower greenhouse gas emissions. The paper explores how INM's integrated approach not only stabilizes crop production but also supports the growth of soil microbes, providing a source of energy and organic carbon. By using a combination of specific microorganisms, organic matter, and minimal doses of inorganic fertilizers, INM can achieve a harmonious balance that reduces environmental pollution and ensures long-term soil fertility. Ultimately, this review underscores the potential of combining organic and INM practices to create a sustainable and productive agricultural system. Through a comparative analysis, the paper aims to guide researchers, policymakers, and farmers towards adopting strategies that foster agricultural sustainability without compromising productivity.

Intensive Citrus Cultivation Suppresses Soil Phosphorus Cycling Microbial Activity

Soil microbes are key drivers in regulating the phosphorus cycle. Elucidating the microbial mineralization process of soil phosphorus-solubilizing bacteria is of great significance for improving nutrient uptake and yield of crops. This study investigated the mechanism by which citrus cultivation affects the soil microbial acquisition strategy for phosphorus by measuring the abundance of the phoD gene, microbial community diversity and structure, and soil phosphorus fractions in the soils of citrus orchards and adjacent natural forests. The results showed that citrus cultivation could lead to a decrease in soil pH and an accumulation of available phosphorus in the soil, with a content as high as 112 mg·kg-1, which was significantly higher than that of natural forests (3.7 mg·kg-1). Citrus cultivation also affected the soil phosphorus fractions, with citrus soil having higher levels of soluble phosphorus (CaCl2-P), citrate-extractable phosphorus (Citrate-P), and mineral-bound phosphorus (HCl-P). The phosphorus fractions of natural forest soils were significantly lower than those of citrus soils, whereas the phoD gene abundance and alkaline phosphatase activity were significantly higher in natural forest soils than in citrus soils. High-throughput sequencing results showed that the Shannon diversity index of phosphate-solubilizing bacteria in citrus soils was 4.61, which was significantly lower than that of natural forests (5.35). The microbial community structure in natural forests was also different from that of citrus soils. In addition, the microbial community composition of phosphate-solubilizing bacteria in citrus soils was also different from that of natural forests, with the relative abundance of Proteobacteria being lower in natural forest soils than in citrus soils. Therefore, citrus cultivation led to a shift of soil microbial acquisition strategy for phosphorus, with external phosphorus addition being the main strategy in citrus soils, whereas microbial mineralization of organic phosphorus was the main strategy in natural forest soils to meet their growth requirements.

Effect of Polyethylene Microplastics on the Microbial Community of Saline Soils

Mulching to conserve moisture has become an important agronomic practice in saline soil cultivation, and the effects of the dual stress of salinity and microplastics on soil microbes are receiving increasing attention. In order to investigate the effect of polyethylene microplastics on the microbial community of salinized soils, this study investigated the effects of different types (chloride and sulphate) and concentrations (weak, medium, and strong) of polyethylene (PE) microplastics (1% and 4% of the dry weight mass of the soil sample) on the soil microbial community by simulating microplastic contamination in salinized soil environments indoors. The results showed that:PE microplastics reduced the diversity and abundance of microbial communities in salinized soils and were more strongly affected by sulphate saline soil treatments. The relative abundance of each group of bacteria was more strongly changed in the sulphate saline soil treatment than in the chloride saline soil treatment. At the phylum level, the relative abundance of Proteobacteria was positively correlated with the abundance of fugitive PE microplastics, whereas the relative abundances of Bacteroidota, Actinobacteriota, and Acidobacteria were negatively correlated with the abundance of fugitive PE microplastics. At the family level, the relative abundances of Flavobacteriaceae, Alcanivoracaceae, Halomonadaceae, and Sphingomonasceae increased with increasing abundance of PE microplastics. The KEGG metabolic pathway prediction showed that the relative abundance of microbial metabolism and genetic information functions were reduced by the presence of PE microplastics, and the inhibition of metabolic functions was stronger in sulphate saline soils than in chloride saline soils, whereas the inhibition of genetic information functions was weaker than that in chloride saline soils. The secondary metabolic pathways of amino acid metabolism, carbohydrate metabolism, and energy metabolism were inhibited. It was hypothesized that the reduction in metabolic functions may have been caused by the reduced relative abundance of the above-mentioned secondary metabolic pathways. This study may provide a theoretical basis for the study of the effects of microplastics and salinization on the soil environment under the dual pollution conditions.

Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities.

Most of Earth's trees rely on critical soil nutrients that ectomycorrhizal fungi (EcMF) liberate and provide, and all of Earth's land plants associate with bacteria that help them survive in nature. Yet, our understanding of how the presence of EcMF modifies soil bacterial communities, soil food webs, and root chemistry requires direct experimental evidence to comprehend the effects that EcMF may generate in the belowground plant microbiome. To this end, we grew Pinus muricata plants in soils that were either inoculated with EcMF and native forest bacterial communities or only native bacterial communities. We then profiled the soil bacterial communities, applied metabolomics and lipidomics, and linked omics data sets to understand how the presence of EcMF modifies belowground biogeochemistry, bacterial community structure, and their functional potential. We found that the presence of EcMF (i) enriches soil bacteria linked to enhanced plant growth in nature, (ii) alters the quantity and composition of lipid and non-lipid soil metabolites, and (iii) modifies plant root chemistry toward pathogen suppression, enzymatic conservation, and reactive oxygen species scavenging. Using this multi-omic approach, we therefore show that this widespread fungal symbiosis may be a common factor for structuring soil food webs.IMPORTANCEUnderstanding how soil microbes interact with one another and their host plant will help us combat the negative effects that climate change has on terrestrial ecosystems. Unfortunately, we lack a clear understanding of how the presence of ectomycorrhizal fungi (EcMF)-one of the most dominant soil microbial groups on Earth-shapes belowground organic resources and the composition of bacterial communities. To address this knowledge gap, we profiled lipid and non-lipid metabolites in soils and plant roots, characterized soil bacterial communities, and compared soils amended either with or without EcMF. Our results show that the presence of EcMF changes soil organic resource availability, impacts the proliferation of different bacterial communities (in terms of both type and potential function), and primes plant root chemistry for pathogen suppression and energy conservation. Our findings therefore provide much-needed insight into how two of the most dominant soil microbial groups interact with one another and with their host plant.

Reduced belowground allocation of freshly assimilated C contributes to negative plant-soil feedback in successive winter wheat rotations

Abstract Aims Successive winter wheat (WW) rotations are associated with yield reduction, often attributed to the unfavorable soil microbes that persist in the soil through plant residues. How rotational positions of WW affect the allocation of freshly assimilated carbon (C), an energy source for soil microbes, above and belowground remains largely unknown. Methods A 13CO2 pulse labeling rhizotron experiment was conducted in the greenhouse to study freshly fixed C allocation patterns. WW was grown in soil after oilseed rape (W1), after one season of WW (W2), and after three successive seasons of WW (W4). We used an automatic manifold system to measure excess 13C of soil respiration at six depths and five different dates. Excess 13C was also measured in dissolved organic C (DOC), microbial and plant biomass pools. Results There was a strong yield decline in successive WW rotations accompanied by distinct changes in root growth. Higher excess 13C of soil respiration was measured in W1 compared to W4, especially in the topsoil during at later growth stages. Higher excess 13C of the DOC and the microbial biomass was also traced in W1 and W4 compared to W2. Less 13C was taken up by successive WW rotations. Conclusions Our study demonstrates a mechanism through which the rotational position of WW affects the allocation of freshly assimilated C above and belowground. WW after oilseed rape sustains belowground allocation of freshly assimilated C for a longer time than successively grown WW and incorporates more of this C to its biomass.

Ecotoxicological effects of polyethylene microplastics and lead (Pb) on the biomass, activity, and community diversity of soil microbes

Microplastics and heavy metals are ubiquitous and persistent contaminants that are widely distributed worldwide, yet little is known about the effects of their interaction on soil ecosystems. A soil incubation experiment was conducted to investigate the individual and combined effects of polyethylene microplastics (PE-MPs) and lead (Pb) on soil enzymatic activities, microbial biomass, respiration rate, and community diversity. The results indicate that the presence of PE-MPs notably reduced soil pH and elevated soil Pb bioavailability, potentially exacerbated the combined toxicity on the biogeochemical cycles of soil nutrients, microbial biomass carbon and nitrogen, and the activities of soil urease, sucrase, and alkaline phosphatase. Soil CO2 emissions increased by 7.9% with PE-MPs alone, decreased by 46.3% with single Pb, and reduced by 69.4% with PE-MPs and Pb co-exposure, compared to uncontaminated soils. Specifically, the presence of PE-MPs and Pb, individually and in combination, facilitated the soil metabolic quotient, leading to reduced microbial metabolic efficiency. Moreover, the addition of Pb and PE-MPs modified the composition of the microbial community, leading to the enrichment of specific taxa. Tax4Fun analysis showed the effects of Pb, PE-MPs and their combination on the biogeochemical processes and ecological functions of microbes were mainly by altering amino acid metabolism, carbohydrate metabolism, membrane transport, and signal transduction. These findings offer valuable insights into the ecotoxicological effects of combined PE-MPs and Pb on soil microbial dynamics, reveals key assembly mechanisms and environmental drivers, and highlights the potential threat of MPs and heavy metals to the multifunctionality of soil ecosystems.

Ecological strategies of soil microbes along climatic gradients: contrasting patterns in grassland and forest ecosystems

Ecological strategies of soil microbes along climatic gradients: contrasting patterns in grassland and forest ecosystems

Shift in the effects of invasive soil legacy on subsequent native and invasive trees driven by nitrogen deposition

Invasive plants can interact with soil microbes to enhance their own performance. Such interactive effects may persist and later affect plant performance and their population dynamics. Such ‘invasive soil legacy’ is the specific plant–soil feedback that can affect future invasions, while it is not clear how nitrogen deposition and interspecific competition influence invasive soil legacy. Thus, we collected field soil and conducted a greenhouse experiment to investigate the effects of soil legacy of the invasive tree Rhus typhina on the performance, functional traits and soil microbial communities of R. typhina and the native tree Ailanthus altissima under three nitrogen levels with and without interspecific competition. The experiment revealed that the outcomes of invasive soil legacies were context-specific and depended on local soil nutrient levels and species competition. Specifically, nitrogen addition changed the negative conspecific soil legacy on subsequent R. typhina to a positive effect, while it became negative in A. altissima. The invasive soil legacy promoted the transpirational rate of R. typhina and A. altissima in monoculture, but inhibited it in a mixture under nitrogen deposition. Nitrogen deposition reduced bacteria and fungi biomass of A. altissima in monocultures and mixtures. In contrast, nitrogen deposition decreased bacterial and fungal biomass of R. typhina in monocultures, but enhanced them in mixtures. Therefore, changes in plant growth, transpiration rate and soil microbial biomass might contribute to the different responses of invasive and native plants to invasive soil legacies. Nitrogen deposition and interspecific competition promote the viability of invasive plants from plant–soil feedback and indicate that ranges of subsequent plants might further expand through below-ground process under nitrogen deposition in the future.

Competition mode and soil nutrient status shape the role of soil microbes in the diversity-invasibility relationship.

Understanding the relationship between plant diversity and invasibility is essential in invasion ecology. Species-rich communities are hypothesized to be more resistant to invasions than species-poor communities. However, while soil microorganisms play a crucial role in regulating this diversity-invasibility relationship, the effects of plant competition mode and soil nutrient status on their role remain unclear. To address this, we conducted a two-stage greenhouse experiment. Soils were first conditioned by growing nine native species separately in them for 1 year, then mixed in various configurations with soils conditioned using one, three, or six species, respectively. Next, we inoculated the mixed soil into sterilized substrate soil and planted the alien species Rhus typhina and native species Ailanthus altissima as test plants. We set up two competition modes (intraspecific and interspecific) and two nutrient levels (fertilization using slow-release fertilizer and nonfertilization). Under intraspecific competition, regardless of fertilization, the biomass of the alien species was higher in soil conditioned by six native species. By contrast, under interspecific competition, the biomass increased without fertilization but remained stable with fertilization in soil conditioned by six native species. Analysis of soil microbes suggests that pathogens and symbiotic fungi in diverse plant communities influenced R. typhina growth, which varied with competition mode and nutrient status. Our findings suggest that the soil microbiome is pivotal in mediating the diversity-invasibility relationship, and this influence varies according to competition mode and nutrient status.

Isolating Indigenous Metal Resistant Gram-Positive Bacteria: Assessing Their Selenite Reduction Potential

The objective of this study is to isolate gram-positive bacilli from soil and to study the effects of physiological parameters on their heavy metal resistance. High levels of metals in the soil can have major toxic effects on soil microorganisms and may cause a great change in the species diversity and population sizes of soil microbes. In current study soil samples were collected from the agriculture drainage water and soil in Lahore. After the selection of sixty gram-positive strains, their biochemical and metabolic profile was structured and all were auxin producing. The isolates were resistant to multiple heavy metals including Ni. Pb, Cr, Li and Hg. Their selenite reduction was estimated at varyingpH, Temperature and concentrations of selenite and all were resistant upto 3000 ?g/ml, However, their efficacy of reducing selenite was majorly affected by set physiological parameters.

Understanding the dynamic interactions of root-knot nematodes and their host: role of plant growth promoting bacteria and abiotic factors.

Root-knot nematodes (Meloidogyne spp., RKN) are among the most destructive endoparasitic nematodes worldwide, often leading to a reduction of crop growth and yield. Insights into the dynamics of host-RKN interactions, especially in varied biotic and abiotic environments, could be pivotal in devising novel RKN mitigation measures. Plant growth-promoting bacteria (PGPB) involves different plant growth-enhancing activities such as biofertilization, pathogen suppression, and induction of systemic resistance. We summarized the up-to-date knowledge on the role of PGPB and abiotic factors such as soil pH, texture, structure, moisture, etc. in modulating RKN-host interactions. RKN are directly or indirectly affected by different PGPB, abiotic factors interplay in the interactions, and host responses to RKN infection. We highlighted the tripartite (host-RKN-PGPB) phenomenon with respect to (i) PGPB direct and indirect effect on RKN-host interactions; (ii) host influence in the selection and enrichment of PGPB in the rhizosphere; (iii) how soil microbes enhance RKN parasitism; (iv) influence of host in RKN-PGPB interactions, and (v) the role of abiotic factors in modulating the tripartite interactions. Furthermore, we discussed how different agricultural practices alter the interactions. Finally, we emphasized the importance of incorporating the knowledge of tripartite interactions in the integrated RKN management strategies.