Soil Microorganisms Research Articles

Assessing the Efficacy of Cyanobacterial Strains as Oryza sativa Growth Biostimulants in Saline Environments.

Soil salinity, which affects plant photosynthesis mechanisms, significantly limits plant productivity. Soil microorganisms, including cyanobacteria, can synthesize various exometabolites that contribute to plant growth and development in several ways. These microorganisms can increase plant tolerance to salt stress by secreting various phytoprotectants; therefore, it is highly relevant to study soil microorganisms adapted to high salinity and investigate their potential to increase plant resistance to salt stress. This study evaluated the antioxidant activity of four cyanobacterial strains: Spirulina platensis Calu-532, Nostoc sp. J-14, Trichormus variabilis K-31, and Oscillatoria brevis SH-12. Among these, Nostoc sp. J-14 presented the highest antioxidant activity. Their growth-stimulating effects under saline conditions were also assessed under laboratory conditions. These results indicate that Nostoc sp. J-14 and T. variabilis K-31 show significant promise in mitigating the harmful effects of salinity on plant size and weight. Both strains notably enhanced the growth of Oryza sativa plants under saline conditions, suggesting their potential as biostimulants to improve crop productivity in saline environments. This research underscores the importance of understanding the mechanisms by which cyanobacteria increase plant tolerance to salt stress, paving the way for sustainable agricultural practices in saline areas.

Water Management-Mediated Changes in the Rhizosphere and Bulk Soil Microbial Communities Alter Their Utilization of Urea-Derived Carbon.

As one of the most important fertilizers in agriculture, the fate of urea-derived nitrogen (urea-N) in agricultural ecosystems has been well documented. However, little is known about the function of urea-derived carbon (urea-C) in soil ecosystems, especially which soil microorganisms benefit most from the supply of urea-C and whether the utilization of urea-C by the rhizosphere and bulk soil microorganisms is affected by irrigation regimes. To address this, a soil pot experiment was conducted using 13C-labeled urea to investigate changes in the composition of the rhizosphere and bulk soil microbial communities and differences in the incorporation of urea-derived C into the rhizosphere and bulk soil phospholipid fatty acids (PLFA) pool under flooded irrigation (FI) and water-saving irrigation (CI). Our results suggest that the size and structure of the rhizosphere and bulk soil microbial communities were strongly influenced by the irrigation regime. The CI treatment significantly increased the total amount of PLFA in both the rhizosphere and bulk soil compared to the FI treatment, but it only significantly affected the abundance of Gram-positive bacteria (G+) in the bulk soil. In contrast, shifts in the microbial community structure induced by irrigation regimes were more pronounced in the rhizosphere soil than in the bulk soil. Compared to the FI treatment, the CI treatment significantly increased the relative abundances of the G+ and Actinobacteria in the rhizosphere soil (p < 0.05). According to the PLFA-SIP, most of the labeled urea-derived C was incorporated into 16:1ω7c, 16:0 and 18:1ω7c under both treatments. Despite these general trends, the pattern of 13C incorporation into the PLFA pool differed between the treatments. The factor loadings of individual PLFAs suggested that 18:1ω7c, 16:1ω7c and 16:1ω5c were relatively enriched in urea-C in the bulk soil, while 17:1ω8c, i16:0 and 16:0 were relatively enriched in urea-C in the rhizosphere soil under different irrigation regimes. The loadings also confirmed that 10-me16:0, cy17:0 and cy19:0 were relatively enriched in urea-C under the CI treatment, whereas 14:0, a15:0 and 15:0 were relatively enriched in urea-C under the FI treatment. These results are helpful not only in revealing the interception mechanism of urea-C in soil but also in understanding the functions of key microbes in element cycles.

Altitudinal Effects on Soil Microbial Diversity and Composition in Moso Bamboo Forests of Wuyi Mountain.

Moso bamboo (Phyllostachys edulis) forest is a key ecosystem and its soil microbial community plays a crucial role in maintaining the ecosystem's functions, but it is very vulnerable to climate change. An altitude gradient can positively simulate environmental conditions caused by climate change, and hence, it provides an efficient means of investigating the response of soil microorganisms to such climatic changes. However, while previous research has largely concentrated on plant-soil-microorganism interactions across broad altitudinal ranges encompassing multiple vegetation types, studies examining these interactions within a single ecosystem across small altitudinal gradients remain scarce. This study took Moso bamboo forests at different altitudes in Wuyi Mountain, China, as the research object and used high-throughput sequencing technology to analyze the soil microbial community structure, aiming to elucidate the changes in soil microbial communities along the altitude gradient under the same vegetation type and its main environmental driving factors. This study found that the structure of bacterial community was notably different in Moso bamboo forests' soil at varying altitudes, unlike the fungal community structure, which showed relatively less variance. Bacteria from Alphaproteobacteria phylum were the most dominant (14.71-22.91%), while Agaricomycetes was the most dominating fungus across all altitudinal gradients (18.29-30.80%). Fungal diversity was higher at 530 m and 850 m, while bacterial diversity was mainly concentrated at 850 m and 1100 m. Redundancy analysis showed that soil texture (sand and clay content) and available potassium content were the main environmental factors affecting fungal community structure, while clay content, pH, and available potassium content were the main drivers of bacterial community structure. This study demonstrates that the altitude gradient significantly affects the soil microbial community structure of Moso bamboo forest, and there are differences in the responses of different microbial groups to the altitude gradient. Soil properties are important environmental factors that shape microbial communities. The results of this study contribute to a deeper understanding of the impact of altitude gradient on the soil microbial community structure of Moso bamboo forests, thus providing support for sustainable management of Moso bamboo forests under climate change scenarios.

Influence of thinning on carbon storage mediated by soil physicochemical properties and microbial community composition in large Chinese fir timber plantation

BackgroundThinning practices are useful measures in forest management and play an essential role in maintaining ecological stability. However, the effects of thinning on the soil properties and microbial community in large Chinese fir timber plantations remain unknown. The purpose of this study was to investigate the changes in soil physicochemical properties and microbial community composition in topsoil (0–20 cm) under six different intensities (i.e., 300 (R300), 450 (R450), 600 (R600), 750 (R750) and 900 (R900) trees per hectare and 1650 (R1650) as a control) in a large Chinese fir timber plantation.ResultsCompared with the CK treatment, thinning significantly altered the contents of soil organic carbon (SOC) and its fractions but not in a linear fashion; these indicators were highest in R900. In addition, thinning did not significantly affect the soil microbial community diversity indices but significantly affected the relative abundance of the core microbial community. Proteobacteria, Acidobacteria, and Actinobacteria were the dominant bacterial phyla; the relative abundances of Proteobacteria and Acidobacteria were highest in R900, and that of Actinobacteria was lowest in R900. The dominant fungal phyla were Ascomycota, Basidiomycota and Mucoromycota; the relative abundance of Ascomycota was lowest in R900, and that of Mucoromycota was highest in R900. The fungal microbial community composition was more sensitive than the bacterial community composition. The activity of the carbon-cycling genes was not linearly correlated with thinning, and the abundance of C-cycle genes was highest in R900.ConclusionsThese findings are important because they show that SOC and its fractions and the abundance of the soil microorganism community in large Chinese fir timber plantations can be significantly altered by thinning, thus affecting the capacity for carbon storage. These results may advance our understanding of how the density of large timber plantations could be modified to promote soil carbon storage.

Cesium accumulation and plant growth promotion characteristics of Paecilomyces lilacinus A10 isolated from Brassica juncea L. rhizosphere soil

The combined microbial-plant remediation has increasingly been used to remediate heavy metal-contaminated soil. Some microorganisms could enhance phytoremediation efficiency by solubilizing heavy metal and improve plant growth by producing phytohormones in the heavy metal contaminated soils. In the present study, a strong cesium (Cs)-tolerant fungal strain Paecilomyces lilacinus was identified from soil microorganisms contaminated with Cs, and the enrichment conditions for Cs were optimized. Furthermore, the effects of the A10 fermentation solution on the growth of Indian mustard (Brassica juncea L.) seedlings were investigated. The results indicated that the optimal combination of factors consisted of a culture temperature of 28 °C, pH7.0, initial concentration of Cs at 5.91 g·L−1. The maximum enrichment of Cs in the A10 was up to 75.36 mg·g−1 DW. In addition, the enrichment of Cs in Indian mustard was significantly enhanced by the application of the A10 fermentation solution, and the growth of Indian mustard was promoted under Cs stress. The present study has expanded the repertoire of microbial resources available for facilitating the Cs contaminated soil, thereby enhancing its applicability in the phytoremediation strategies.

Influence of Bacterial Fertilizers on the Structure of the Rhizospheric Fungal Community of Cereals South of Western Siberia

The general lack of knowledge on the conditions of Western Siberia (Omsk region) and the taxonomic diversity of zonal soils determines the relevance of these studies. The research was carried out in order to study the effect of complex biologics on the taxonomic diversity of the fungal component of the microbiome of the rhizosphere of cereals and the phytosanitary condition of crops in the southern forest-steppe (meadow-chernozem soil) and subtaiga (gray forest soil) zones of the Omsk Irtysh region (Western Siberia). This work was carried out in 2022–2023, using laboratory studies in combination with field experiments and metagenomic and statistical analyses. The objects of research were varieties of cereals and grain forage crops of Omsk selection: soil microorganisms. The scheme of the experiment involved the study of the following options: varieties of cereals (factor A): spring soft wheat—Omsk 42, Omsk 44, Tarskaya 12; durum wheat—Omsk coral; barley—Omsk 101; oats—Siberian hercules; bacterial preparation for seed inoculation (factor B) without the drug—Mizorin and Flavobacterin. The sampling of the plant rhizosphere for metagenomic analysis was carried out during the earing phase (July). For the first time, the taxonomic composition of the fungal community was determined based on the analysis of amplicon libraries of fragments of ribosomal operons of ITS2 fungi during colonization of crop roots by nitrogen-fixing bacteria in various soil and climatic zones of the Omsk region. The fungal component of the microbiome was analyzed in two zones of the Omsk region (southern forest-steppe and subtaiga). The five dominant phyla of soil fungi were located in the following decreasing series: Ascomycota (about 70%) &gt; Mortierellomycota (about 7%) &gt; Basidiomycota (about 5%) &gt; Mucoromycota (3%) &gt; Chytridiomycota (1%). The five main genera of fungi inhabiting the rhizosphere of cereals are located in a decreasing row: Giberella (6.9%) &gt; Mortierella (6.6%) &gt; Chaetomium (4.8%) &gt; Cladosporium (3.8%) &gt; Rhizopus (3.3%). The predominantly positive effect of biologics of associative nitrogen fixation on the fungal community of the soil (rhizosphere) of experimental sites located in different soil and climatic zones has been established. During seed bacterization, the growth of saprotrophic fungal genera was noted in relation to the control variants Pseudogymnoascus, Chloridium, Clonostachys, Trihoderma, etc., and the fungicidal properties of bacterial strains introduced into the soil were actively manifested relative to phytopathogenic fungi of the genera Alternaria, Blumeria, Fusarium, etc. According to the results of determining the number of infectious structures of Rhizoctonia solani, it was found that the population of the soil with viable cells of this pathogen was 1–3 pcs/g (below the threshold of harmfulness, PV 20 pcs/g of soil), which indicates a favorable phytosanitary situation with respect to the pathogen. The fungicidal effect of the applied bacterial fertilizers on Rhizoctonia solani could not be detected. The number of Bipolaris sorokiniana varied depending on the drug used. In the conditions of the southern forest-steppe zone of the Omsk region (meadow-chernozem soil), the greatest fungicidal effect was noted in Flavobacterin application variants on wheat of the Omsk 42 variety, durum wheat of the Omsk coral variety, and barley; the decrease in conidia relative to the control was 73, 35, and 29%, respectively. In the subtaiga zone of the Omsk Irtysh region (gray forest soil), as in the southern forest-steppe zone, pre-sowing bacterization of seeds with Flavobacterin led to a decrease in Bipolaris sorokiniana in the rhizosphere of wheat of the Omsk 42 variety by 18%, and oats by 27%, to control. The use of the drug Mizorin in some variants of the experiment led to an insignificant decrease in the harmful fungus or had no effect at all.

Microbial controls on seed germination

Germination onset is the first stage in the phenological plant cycle, influenced by abiotic and biotic factors. Both soil and seed microbiota are key drivers of germination, influencing seed storage, dormancy release, and germination rates. Interactions between plants and soil microbes contribute to plant adaptation to their environment. Therefore, plants could benefit more from interacting with soil microbes from the local (‘home’) environment than with those from other origins. As crucial germination drivers, plants may select for specific microbial taxa that provide them with a home-field advantage, regardless of microbial richness and diversity in their surroundings. Here, we looked at the role of seed-associated microorganisms on holm oak (Quercus ilex) germination, whether seed or soil microbes have a greater impact on this process, and how the interaction between seed and soil microbiotas influence holm oak germination. We found that microbes on Q. ilex seeds have a significant effect on germination, with non-sterilised seeds having higher germinated acorns than sterilised ones. Moreover, when co-occurring, soil microorganisms enhance the effect of seed-associated microbes on holm oak germination. Overall, our results evidence a home-field advantage where local soil communities, along with seed-associated microorganisms, enhance Q. ilex germination over that of different soil or plant species, evidencing the importance of local adaptation for plant fitness.

Molecular Identification of Soil Bacteria

The molecular identity of soil micro-organism is pivotal for expertise soil ecosystems that are important for agricultural productiveness, environmental sustainability, and biogeochemical cycles. This take a look at employs superior molecular techniques, inclusive of high-throughput sequencing and bioinformatics gear, to identify and classify micro-organism in various soil samples. Our comprehensive evaluation discovered a wealthy variety of bacterial species, which include both known and novel taxa, illustrating the complexity of soil micro biomes. These findings emphasize the vast function of soil micro-organism in nutrient cycling and plant health, supplying treasured insights for enhancing soil management practices and agricultural results. Additionally, the observe highlights the efficacy of molecular strategies in microbial ecology, suggesting potential future research instructions to take advantage of soil bacteria for environmental and biotechnological packages. This paintings underscores the crucial importance of molecular identification in unveiling the intricacies of soil bacterial groups and their useful roles within the ecosystem.

Evaluation of Physicochemical Parameters, Total Bacteria Count and some Heavy Metal Levels in Soil from Automobile Workshop Activities at Nnewi Local Government Area, Anambra State, Nigeria

Disposal of used motor oil and chemical substances on land leads to loss in soil quality by minimal abundance and variety of microorganisms in soil. The objective of this paper was to evalaute the physicochemical parameters, total bacteria count and some heavy metal levels in soil from automobile workshop activities at Nnewi Local Government Area, Anambra State, Nigeria. Using field survey and appropriate standard laboratory analyses, the results showed that the control uncontaminated soil samples recorded high bacteria count (6.9 x106 cfu/g). The available soil nitrogen(9.0), soil nutrients nitrate (15.10) and phosphorous (17.3) all recorded appropriate values when compared with WHO standard. The acidity of the soil using pH value as an indicator showed that the uncontaminated control soil samples were acceptable for crops also the Ec values. The heavy metals analysed indicates that the control soil samples were also moderate in heavy metals accumulation when compared with the contaminated soil samples particularly Cd, Pb (0.08) and Hg (0.01) while Cd was not detectable. These findings have shown that automobile activities can denature soil properties which could lead to soil infertility. The automobile activities has to be controled by the concerned agencies in Nigeria. Environmental education should be encouraged to reduce effects of anthropogenic activities on soil quality in the study area.

The effectiveness of combination of arbuscular mycorrhizal fungi and compost ameliorant on sengon growth in former coal mine soil

Abstract Mining activities give a negative impact to the soil which become the ex-coal mine soil. The soil has a solid soil structure and low nutrient content so is not suitable for planting. The problems need to be improved by being treated with biological agents from soil microorganisms such as Arbuscular Mycorrhizal Fungi (AMF). The provision of AMF on ex-coal mine soil with the addition of ameliorant compost can be one strategy that can be used. AMF can help increase plant growth and help the process of absorption of phosphate (P) by plants. Compost from goat manure can help the association between AMF and plant roots, also being a source of nutrients that are free from chemicals. The plants which suitable for this association are sengon. Sengon commonly used to help revegetation of ex-mining soil because it is able to withstand various conditions of overgrown soil. This study aims to determine the effect of the addition of a combination of AMF and compost on the growth of sengon plants in the soil of ex-coal mines. Observations were made weekly until the age of three months, the best results were the results at the end of the observation. The results showed that the AMF dose and the addition of compost had an effect on percent AMF colonization, increasing plant height, dry weight of plant roots increasing plant stem diameter, and number of leaves.

Rhamnolipids Enhance Bioremediation of Petroleum-Contaminated Soil

_ This article, written by JPT Technology Editor Chris Carpenter, contains highlights of paper SPE 215952, “Enhancing Bioremediation of Petroleum-Contaminated Soil Using Rhamnolipids: A Combined Laboratory and Field Study,” by Pan Ni, Lehigh University; Yonglin Ren, SPE, Stepan Oilfield Solutions; and Derick G. Brown, Lehigh University, et al. The paper has not been peer reviewed. _ Hydrocarbon spills can occur at various stages of the oil and gas exploration and production process. Treating these spills onsite to avoid more-expensive excavation and incineration processes would be beneficial. The study outlined in the complete paper aims to optimize the use of rhamnolipid biosurfactants for enhancing the bioremediation of hydrocarbon-contaminated soil. The goal of this work was to explore the effects of rhamnolipid application on hydrocarbon degradation rate under both laboratory and field conditions and to examine the effects of this treatment on the indigenous soil microorganism population. Introduction The authors write that, to the best of their knowledge, previous research studies on rhamnolipid-based soil remediation focused on either laboratory or field tests and that comparison between laboratory-scale and field-scale tests is overlooked but necessary for practical applications. Materials and Methods Materials and Chemicals. The soil used for this work (23 kg for the laboratory test, 10 metric tons for the field test) was obtained from a contaminated site in Longford Mills, Canada. The soil properties are presented in Table 1 of the complete paper. The rhamnolipid stock solution featured 9.8 wt% rhamnolipid blends in deionized water. Another commercial remediation agent (enzyme-based) was used in the field test to compare with the performance of rhamnolipid. Ammonium chloride (NH4Cl) and potassium hydrogen phosphate (K2HPO4) also were used along with sodium hydroxide (NaOH). Experimental Setup. Both laboratory and field tests were ex-situ tests using simulated soil piles. The laboratory test was conducted for 193 days. For the laboratory experiments, an aerobic/anaerobic respirometer system equipped with a low-temperature incubator was used to monitor the in-situ oxygen uptake inside eight reactors (Fig. 1). Each reactor contained 250 g of soil with rhamnolipid doses of 0, 0.1, 0.5, and 1 g/kg. The temperature was set to 25°C. Inside each reactor was placed 10 mL of 4-M NaOH in a 20-mL glass beaker to adsorb the produced CO2. A parallel set of eight reactors was prepared and operated under the same conditions. The nutrients of nitrogen and phosphorous (NH4Cl and K2HPO4) were added at specific times based on the oxygen uptake rate monitored by the respirometer. To avoid the possible inhibition of the microbes in the soil as a result of high ionic strength (greater than 160 mM) in the soil pore water, NH4Cl and K2HPO4 were added so that the molar concentration in the soil pore water did not exceed 100 mM. The field test is being conducted in Longford Mills, Ontario, Canada, and is ongoing at the time of writing. For the field test, 10 metric tons of soil were mixed to achieve homogeneity before the preparation of the soil piles. Five different treatment conditions were examined using duplicate soil piles (10 piles total), with each consisting of 1 metric ton of soil. Nutrient addition was similar to that used in the laboratory tests. Temperature and moisture were monitored every few days at five points in each soil pile, and the pH was monitored once every month at five points.

Smooth vetch covering alters soil aggregate microbial metabolic limitations in citrus orchards

Green manure covering alters the supply-demand relationship between soil resources and microorganisms by improving soil structure and increasing carbon inputs. However, it remain unclear how soil microorganism respond to the imbalance between resources and demands at the aggregate scale. The present study analyzed the stoichiometric ratios of organic carbon, nitrogen, and phosphorus nutrients, microbial extracellular enzyme activities, and biomass in large macroaggregates (LMA, 2–8 mm), small macroaggregates (SMA, 0.25–2 mm), and microaggregates (MIA, < 0.25 mm) under smooth vetch covering. The relationship between microbial carbon use efficiency and nutrient restriction in soil aggregates was elucidated and the alteration was revealed in microbial metabolic pathways and carbon sequestration functions within soil aggregates under green manure covering. The results showed that: (1) Smooth vetch covering significantly increased the C: N resource imbalance (ln(MBC: MBN)/ln(SOC: TN)) in soil aggregates from 0.50 to 0.69, and thus increased the nitrogen requirement of soil aggregates. However, the N:P resource imbalance (ln(MBN: MBP)/ln(TN: TP)) decreased from 2.25 to 1.78, especially in microaggregates. (2) To mitigate the limitation imposed by nitrogen availability at the aggregate level, microorganisms have ramped up the activity of C- (46.72 %–98.64 %), N- (2.32 %–121.00 %), and P- acquiring enzymes (119.11 %–187.78 %). Nevertheless, the spatial heterogeneity inherent in soil aggregates, characterized by varying particle sizes, has led to a pivotal shift in microbial nutrient limitation. As soil aggregate size diminishes, the primary constraint on microbial activity transitions from nitrogen limitation to phosphorus limitation, reflecting the dynamic interplay between soil structure and nutrient availability. (3) In addition, smooth vetch covering increased the microbial carbon use efficiency of soil aggregates, and it increased with the increase of the particle size of soil aggregates: LMA (178.80 %) > SMA (147.23 %) > MIA (9.99 %). Microorganisms allocated more energy to generate biomass instead of obtaining limiting nutrient elements. These results indicate that smooth vetch covering could increase the organic carbon content of soil aggregates. In addition, in order to adapt to nutrient imbalance, soil aggregates microorganisms choose a “egoistic” metabolic pathway, which alleviates nutrient limitation and assimilated more energy and nutrients into their own biomass and reduces the release of organic carbon. It is evident that integrating Vicia villosa Roth var. glabresens Koch as a ‘green manure’ in orchards serves a dual purpose: it mitigates the environmental impact of chemical fertilizers while simultaneously promoting soil carbon sequestration. This approach offers a robust theoretical framework for achieving the harmonious integration of ecological sustainability and economic viability in economic forestry, such as citrus orchards.

Biochar combined with humic acid improves the soil environment and regulate microbial communities in apple replant soil

Apple replant disease (ARD) negatively affects plant growth and reduces yields in replanted orchards. In this study, biochar and humic acid were applied to apple replant soil. We aimed to investigate whether biochar and humic acid could promote plant growth and alleviate apple replant disease by reducing the growth of harmful soil microorganisms, changing soil microbial community structure, and improving the soil environment. This experiment included five treatments: apple replant soil (CK), apple replant soil with methyl bromide fumigation (FM), replant soil with biochar addition (2 %), replant soil with humic acid addition (1.5 ‰), and replant soil with biochar combined with humic acid. Seedling biomass, the activity of antioxidant enzymes in the leaves and roots, and soil environmental variables were measured. Microbial community composition and structure were analyzed using ITS gene sequencing. Biochar and humic acid significantly reduced the abundance of Fusarium and promoted the recovery of replant soil microbial communities. Biochar and humic acid also increased the soil enzymes activity (urease, invertase, neutral phosphatase, and catalase), the plant height, fresh weight, dry weight, the activity of antioxidant enzymes (superoxide dismutase, peroxidase, and catalase), and root indexes of apple seedlings increased in replant soil. In sum, We can use biochar combined with humic acid to alleviate apple replant disease.

Extracellular enzyme activity and stoichiometry reveal P limitation in the wild panda habitat of the Qinling Mountains

AbstractSoil microbial extracellular enzymes play crucial roles in soil carbon and nutrient cycling by catalyzing soil biochemical processes. However, the activity and stoichiometry of enzymes involved in the carbon, nitrogen, and phosphorus cycles in the environment with the highest density of wild giant pandas on the southern slopes of the Qinling Mountains is unknown. We have established eight research areas at an elevation of 1090–2621 m. The β‐1,4‐glucosidase (BG), β‐1,4‐N‐acetylglucosaminidase (NAG), and acid phosphatase (APase) in soil samples were measured. We used redundancy analysis and structural equation model to evaluate the driving factors of metabolic restriction of soil microorganisms along the elevational gradient, and four models were used to cross‐evaluate the nutrient restriction status of soil microorganisms. The results showed that most soil physiochemical properties, soil microbial biomass, and microbial extracellular enzymes exhibited a hump‐shaped trend with increasing elevation. Elevation indirectly affected soil enzyme activity and stoichiometry by C, N, and P status. Microorganisms are limited by C at lower and higher elevations but limited by N at medium elevations. These results could help strengthen the conservation and management of the wild panda's natural habitat.

Regulating Leaf Photosynthesis and Soil Microorganisms through Controlled-Release Nitrogen Fertilizer Can Effectively Alleviate the Stress of Elevated Ambient Ozone on Winter Wheat.

The mitigation mechanisms of a kind of controlled-release nitrogen fertilizer (sulfur-coated controlled-release nitrogen fertilizer, SCNF) in response to O3 stress on a winter wheat (Triticum aestivum L.) variety (Nongmai-88) were studied in crop physiology and soil biology through the ozone-free-air controlled enrichment (O3-FACE) simulation platform and soil microbial metagenomics. The results showed that SCNF could not delay the O3-induced leaf senescence of winter wheat but could enhance the leaf size and photosynthetic function of flag leaves, increase the accumulation of nutrient elements, and lay the foundation for yield by regulating the release rate of nitrogen (N). By regulating the soil environment, SCNF could maintain the diversity and stability of soil bacterial and archaeal communities, but there was no obvious interaction with the soil fungal community. By alleviating the inhibition effects of O3 on N-cycling-related genes (ko00910) of soil microorganisms, SCNF improved the activities of related enzymes and might have great potential in improving soil N retention. The results demonstrated the ability of SCNF to improve leaf photosynthetic function and increase crop yield under O3-polluted conditions in the farmland ecosystem, which may become an effective nitrogen fertilizer management measure to cope with the elevated ambient O3 and achieve sustainable production.

Tradeoff between productivity and stability across above- and below-ground communities.

An 11-year nitrogen addition experiment reveals that for both plants and soil microorganisms, the ruderal strategists had higher productivity but lower stability, while the tolerant strategists had higher stability and lower productivity, leading to the tradeoff between productivity and stability within and across above- and below-ground communities.

Soil pathogenic fungal groups and soil nutrient cycling under land use practices in Liupanshan Mountain in China

AbstractDifferent land‐use practices in temperate forests strongly affect soil quality and soil microbial communities, whereas the assembly and interactions of soil functional fungal communities provide positive feedback. Therefore, the effects of forest ecosystem degradation on the composition of functional soil fungal community and soil nutrient cycling are of particular importance. We studied forest ecosystems in the Liupanshan Mountains in the northwestern part of the Loess Plateau and analyzed the relationship of soil fungal community and soil nutrient cycling under different land use practices (natural forest [NF], plantation forest, and farmland [FL]). The results showed that soil pH and electrical conductivity were the highest in FL, whereas the soil carbon cycle index and nitrogen cycle index decreased. The soil total phosphorus content did not change significantly with an increase in available phosphorus content. The change from NF to FL significantly increased the number of operational taxonomic units, diversity, and richness of soil fungal communities. The composition of the soil fungal communities was also strongly influenced by carbon and nitrogen cycle indices. In addition, FL reclamation increased the complexity of the soil microorganism co‐occurrence network, and the interrelationships between soil functional fungal community were enhanced. Pathogenic fungal communities were enriched in FLs, and their relative abundance was significantly regulated by environmental factors such as pH and the ratio of nitrogen to phosphorus. The soil pathogenic fungal community affected carbon and nitrogen cycle indices to varying degrees.

Impacts of Selenium Supplementation on Soil Mercury Speciation, Soil Properties and Mercury-Resistant Microorganisms and Resistant Genes

Soil mercury (Hg) contamination is a serious threat to local ecology and public health. Exogenous selenium (Se) supplementation can effectively reduce the toxicity of Hg. However, the mechanisms affecting the changes in soil Hg speciation, soil properties and the microbial Hg-resistant system during the Se–Hg interaction after exogenous Se supplementation are not clear. Therefore, in this study, soil culture experiments were conducted to analyze the effects of different Se additions on the transformation of Hg speciation, soil properties and Hg-resistant microorganisms and resistant genes (mer operon). The results indicated that Se supplementation facilitated the transformation of soil Hg from bioavailable (exchangeable and carbonate-bound) to stable forms (organic material-bound and residual), significantly reducing Hg bioavailability. Se supplementation notably decreased the electrical conductivity of Hg-contaminated soil, but had no significant effect on the soil pH, organic matter content, cation exchange capacity or alkaline phosphatase and catalase activities. The maximum activity levels of soil sucrase and urease were observed when 1 mg kg−1 Se was added. Se significantly inhibited soil peroxidase and ascorbate oxidase activities, thereby alleviating the oxidative stress in the soil system caused by Hg. Additionally, Se significantly activated the Hg-resistant system in soil microorganisms by either decreasing or increasing the regulatory genes merD and merR, and it significantly upregulated the cytoplasmic protein gene merP and the membrane protein genes merC, merF and merT. This further increased the abundance of the organomercury lyase gene merB and the mercuric reductase gene merA, promoting the conversion of Hg species to Hg⁰. Furthermore, the abundance of mer operon-containing microorganisms, such as Thiobacillus ferrooxidants, Pseudomonas, Streptomyces and Cryptococcus, significantly increased with Se addition, explaining the role of soil microorganisms in mitigating soil Hg stress via Se supplementation.

Impact of biochar on the degradation rates of three pesticides by vegetables and its effects on soil bacterial communities under greenhouse conditions

A 28 days pesticide degradation experiment was conducted for broccoli (Brassica oleracea L. var. italica Planch) and pakchoi (Brassica chinensis L.) with three pesticides (chlorantraniliprole (CAP), haloxyfop-etotyl (HPM), and indoxacarb (IXB)) to explore the effects of biochar on pesticide environmental fate and rhizosphere soil diversity. Rice straw biochar (RB) was applied to soil at a 25.00 t ha−1 dosage under greenhouse conditions, and its effects on the degradation of three pesticides in vegetables and in soil were investigated individually. Overall, RB application effectively facilitated CAP and HPM degradation in broccoli by 13.51–39.42% and in broccoli soil by 23.80–74.10%, respectively. RB application slowed the degradation of CAP, HPM and IXB in pakchoi by 0.00–57.17% and slowed the degradation of CAP in pakchoi by 37.32–43.40%. The results showed that the effect of RB application on pesticide degradation in crops and soil was related to biochar properties, pesticide solubility, plant growth status, and soil characteristics. Rhizosphere soil microorganisms were also investigated, and the results showed that biochar application may be valuable for altering bacterial richness and diversity. The effect of biochar application on pesticide residues in crops and soil was influenced by the vegetable variety first, and the second was pesticide characteristics. RB applied to soil at a 25.00 t ha−1 dosage under greenhouse conditions is recommended for broccoli production to ensure food safety. Our results suggested that biochar application in soil could reduce pesticide non-point source pollution, especially for highly soluble pesticides, and could affect soil microorganisms.

Intercropping wheat and appropriate nitrogen supply can alleviate faba bean wilt disease by reshaping soil microbial community structure

RationaleThe faba bean-wheat intercropping system is widely adopted to mitigate the incidence of faba bean wilt. The application of nitrogen fertilizers is imperative for promoting crop growth. Determining the optimal nitrogen dosage is crucial for enhancing the disease control efficacy of intercropping systems. So far, the impact of different nitrogen input management on soil microbial communities during the occurrence of faba bean diseases under intercropping conditions of faba bean and wheat has not been clear. ObjectiveTo explore the effect of different nitrogen application levels on the inter-root soil microbial community of faba bean in intercropping scenarios and its relationship with the incidence of faba bean wilt. Materials and methodsTwo planting modes, namely sole faba bean cultivation (M) and faba bean-wheat intercropping (I), were established in both field and pot experiments. Four nitrogen application levels (N0: 0 kg ha−1; N1: 45 kg ha−1; N2: 90 kg ha−1; and N3: 135 kg ha−1) were used to assess the incidence of wilt disease in faba bean. Furthermore, collect soil samples from the rhizosphere of faba bean plants for enzyme and microbial assays in the rhizosphere soil. ResultsThe application of nitrogen (N1, N2, and N3) reduced the incidence of faba bean wilt in the monocultures. Among the same N application levels, intercropping exhibited a significant decrease in wilt incidence compared with monocropping, with the lowest incidence observed at the N2 level. Additionally, the rhizosphere enzyme activity in faba bean was maximized under intercropping at the N2 level. Intercropping increased the richness and diversity of soil microorganisms, leading to an adjusted microbial community structure and the promotion of beneficial microorganism functions. Notably, nitrogen application played a pivotal role in changing the rhizosphere soil microbial community structure of faba bean. A reasonable nitrogen application rate (N2) can significantly improve the disease control effects of intercropping. ConclusionIntercropping with N2(90 kg ha−1) resulted in a significant increase in microbial diversity in faba bean soil. This led to an adaptable microbial structure, effectively mitigating the occurrence of faba bean wilt and ultimately promoting soil function and health.