Soil Dwelling Research Articles

A near chromosome-level genome assembly of a ghost moth (Lepidoptera, Hepialidae)

Ghost moths are an unusual family of primitive moths (Lepidoptera: Hepialidae) known for their large body size and crepuscular adult activity. These moths represent an ancient lineage, frequently have soil dwelling larvae, and are adapted to high elevations, deserts, and other extreme environments. Despite being rather speciose with more than 700 species, there is a dearth of genomic resources for the family. Here, we present the first high quality, publicly available hepialid genome, generated from an Andean species of ghost moth, Druceiella hillmani. Our genome assembly has a length of 2,586 Mbp with contig N50 of 28.1 Mb and N50 of 29, and BUSCO completeness of 97.1%, making it one of the largest genomes in the order Lepidoptera. Our assembly is a vital resource for future research on ghost moth genomics.

Insecticide exposure can increase burrow network production and alter burrow network structure in soil dwelling insects (Agriotes spp.)

Insecticide treated seeds are commonly used to reduce yield losses from burrowing insect damage such as wireworms. Using temporal X-ray Computed Tomography (CT) of soil-filled bioassays, we aimed to quantify changes in burrow network production and structure as a measure of wireworm behavioural change in response to three types of insecticide treated maize seed; compound X (R&D product in field trial stage of development); tefluthrin and thiamethoxam. A biopesticide alternative treatment (neem), untreated maize seed and bare soil were also investigated. Insect health outcomes were also monitored to provide toxicity/mortality data. Wireworms exposed to compound X produced greater burrow networks than untreated maize and neem treatments, similar to that in volume of those produced in bare soil. Compound X exposure also elicited the production of more complex burrow structures, a function of the number of vertices, edges and faces of a shape (V-E+F) related to the number of interconnected branches, compared to any other treatments. Compound X, tefluthrin and thiamethoxam induced mortality at greater rates than neem or untreated, suggesting all three could have potential to manage wireworm populations and reduce yield loss, but only compound X modified burrowing behaviour. With soil biopores playing an important role in soil productivity and carbon sequestration, the wider implications of this increase in burrowing activity for food security and climate change warrants further exploration.

Microfluidic platform for microbial spore germination studies in multiple growth conditions

BackgroundSpores are highly resistant dormant cells, adapted for survival and dispersal, that can withstand unfavourable environmental conditions for extended periods of time and later reactivate. Understanding the germination process of microbial spores is important in numerous areas including agriculture, food safety and health, and other sectors of biotechnology. Microfluidics combined with high-resolution microscopy allows to study spore germination at the single-cell level, revealing behaviours that would be hidden in standard population-level studies.MethodsHere, we present a microfluidic platform – the so-called four-conditions microfluidic chemostat (4CMC) – for germination studies where spores are confined to monolayers inside microchambers, allowing the testing of four growth conditions in parallel. This platform can be used with multiple species, including non-model organisms, and is compatible with existing image analysis software.ResultsIn this study, we focused on three soil dwellers, two bacteria and one fungus, and revealed new insights into their germination. We studied endospores of the model bacterium Bacillus subtilis and demonstrated a correlation between spore density and germination in rich media. We then investigated the germination of the obligate-oxalotrophic environmental bacterium Ammoniphilus oxalaticus in a concentration gradient of potassium oxalate, showing that lower concentrations result in more spores germinating compared to higher concentrations. We also used this microfluidic platform to study the soil beneficial filamentous fungus Trichoderma rossicum, showing for the first time that the size of the spores and hyphae increase in response to increased nutrient availability, while germination times remain the same.DiscussionOur platform allows to better understand microbial behaviour at the single-cell level, under a variety of controlled conditions. While we used it to decipher the responsiveness of soil dwellers’ spores, it would also be suitable for other spores from bacteria or filamentous fungi, but also vegetative cells and yeast, and even microbial communities.

Understanding the transmission of bacterial agents of sapronotic diseases using an ecosystem-based approach: A first spatially realistic metacommunity model.

Pathogens such as bacteria, fungi and viruses are important components of soil and aquatic communities, where they can benefit from decaying and living organic matter, and may opportunistically infect human and animal hosts. One-third of human infectious diseases is constituted by sapronotic disease agents that are natural inhabitants of soil or aquatic ecosystems. They are capable of existing and reproducing in the environment outside of the host for extended periods of time. However, as ecological research on sapronosis is infrequent and epidemiological models are even rarer, very little information is currently available. Their importance is overlooked in medical and veterinary research, as well as the relationships between free environmental forms and those that are pathogenic. Here, using dynamical models in realistic aquatic metacommunity systems, we analyze sapronosis transmission, using the human pathogen Mycobacterium ulcerans that is responsible for Buruli ulcer. We show that the persistence of bacilli in aquatic ecosystems is driven by a seasonal upstream supply, and that the attachment and development of cells to aquatic living forms is essential for such pathogen persistence and population dynamics. Our work constitutes the first set of metacommunity models of sapronotic disease transmission, and is highly flexible for adaptation to other types of sapronosis. The importance of sapronotic agents on animal and human disease burden needs better understanding and new models of sapronosis disease ecology to guide the management and prevention of this important group of pathogens.

Urban pavements as a novel habitat for wild bees and other ground-nesting insects

AbstractMunicipal authorities around the world have come to recognize the importance of making conservation and restoration a priority. Multiple urban restoration programs now foster insects and other pollinators through planting and sowing flowering plants, many of them within residential areas. But residents are not only walking next to pollinators visiting flowering sidewalk grass verges, they are also walking on top of them, nesting in the cracks and interstices of urban pavements.Combining morphological and molecular monitoring schemes, we conducted a survey of urban pavements at twelve locations across Berlin and found that pavements can foster a surprising number and quantity of soil dwelling insects—in particular wild bees and wasps. Pavements located within 200 m to an insect-friendly flower garden were covered with significantly more nests of wild bees and solitary wasps, and showed higher species richness of these groups, while the degree of sealed surfaces in the surrounding had no effect per se. This underlines the positive impact that insect-friendly gardens can have for pollinators and other insects, even in highly sealed areas. Also, it shows the potential of cobbled pavements as valuable nesting sites in highly sealed urban areas. We provide a list of 55 species of ground-nesting Hymenoptera found in Berlin pavements, including 28 species of wild bees and 22 apoid wasps. In our study, the molecular approach only detected three Hymenoptera species and did not yield comparable results to classical monitoring. Nonetheless, using eDNA methods might be a promising tool for further studying soil nesting insects in the future, and to gain insights into the web of life in urban pavements.

Multigenerational toxicity of microplastics derived from two types of agricultural mulching films to Folsomia candida

Degradation and fragmentation of mulching films represents an increasing source of microplastics (MPs, plastic particles 1 μm to 5 mm in size) to agricultural soils. MPs have been shown to affect many soil invertebrates, including springtails. However, these studies typically use test materials representing less environmentally relevant particle types, such as pristine uniform MPs, which do not represent the large range of particle sizes and morphologies found in the field. This study aimed at providing insight into the adverse effects of MPs originating from agricultural mulching films, by using artificially aged MPs derived from both biodegradable (starch-polybutadiene adipate terephthalate (PBAT)) blend, as well as conventional (linear low-density polyethylene (LLDPE)) plastic polymers. The soil dwelling springtail Folsomia candida was exposed to these MPs for five generations in order to elucidate population effects due to possible reproduction toxicity, endocrine disruption, mutagenesis or developmental toxicity. F. candida were exposed to 0, 0.0016, 0.008, 0.04, 0.2, 1, 2, 3, 4 and 5 % (w/w dry soil) MPs in Lufa 2.2 soil, which includes concentrations within the range of environmental relevance. Juveniles produced at each concentration were transferred to the next generation, with the parental, F2 and F4 generations being exposed for four weeks and F1 and F3 generations for five weeks. No concentration-dependent effects on F. candida survival or reproduction were observed in exposures to either of the MPs, in any of the generations. These results suggest that the particular MPs used in this study, derived from mulching films used on agricultural soils, may not be potent toxicants to F. candida, even after long-term exposure and at elevated concentrations.

Soil pH, developmental stages and geographical origin differently influence the root metabolomic diversity and root-related microbial diversity of Echium vulgare from native habitats.

Improved understanding of the complex interaction between plant metabolism, environmental conditions and the plant-associated microbiome requires an interdisciplinary approach: Our hypothesis in our multiomics study posited that several environmental and biotic factors have modulating effects on the microbiome and metabolome of the roots of wild Echium vulgare plants. Furthermore, we postulated reciprocal interactions between the root metabolome and microbiome. We investigated the metabolic content, the genetic variability, and the prokaryotic microbiome in the root systems of wild E. vulgare plants at rosette and flowering stages across six distinct locations. We incorporated the assessment of soil microbiomes and the measurement of selected soil chemical composition factors. Two distinct genetic clusters were determined based on microsatellite analysis without a consistent alignment with the geographical proximity between the locations. The microbial diversity of both the roots of E. vulgare and the surrounding bulk soil exhibited significant divergence across locations, varying soil pH characteristics, and within the identified plant genetic clusters. Notably, acidophilic bacteria were characteristic inhabitants of both soil and roots under acidic soil conditions, emphasizing the close interconnectedness between these compartments. The metabolome of E. vulgare significantly differed between root samples from different developmental stages, geographical locations, and soil pH levels. The developmental stage was the dominant driver of metabolome changes, with significantly higher concentrations of sugars, pyrrolizidine alkaloids, and some of their precursors in rosette stage plant roots. Our study featured the complex dynamics between soil pH, plant development, geographical locations, plant genetics, plant metabolome and microbiome, shedding light on existing knowledge gaps.

Examining the influence of environmental factors on Acanthamoeba castellanii and Pseudomonas aeruginosa in co-culture.

Exploration of interspecies interactions between microorganisms can have taxonomic, ecological, evolutionary, or medical applications. To better explore interactions between microorganisms it is important to establish the ideal conditions that ensure survival of all species involved. In this study, we sought to identify the ideal biotic and abiotic factors that would result in high co-culture viability of two interkingdom species, Pseudomonas aeruginosa and Acanthamoeba castellanii, two soil dwelling microbes. There have been limited studies showing long-term interactions between these two organisms as co-culture can result in high mortality for one or both organisms suggesting a predator-predator interaction may exist between them. In this study, we identified biotic and abiotic conditions that resulted in a high viability for both organisms in long-term co-culture, including optimizing temperature, nutrient concentration, choice of bacterial strains, and the initial ratio of interacting partners. These two species represent ideal partners for studying microbial interactions because amoebae act similarly to mammalian immune cells in many respects, and this can allow researchers to study host-pathogen interactions in vitro. Therefore, long-term interaction studies between these microbes might reveal the evolutionary steps that occur in bacteria when subjected to intense predation, like what occurs when pathogens enter the human body. The culture conditions characterized here resulted in high viability for both organisms for at least 14-days in co-culture suggesting that long-term experimental studies between these species can be achieved using these culture conditions.

Planctomycetes of the Genus Singulisphaera Possess Chitinolytic Capabilities.

Planctomycetes of the genus Singulisphaera are common inhabitants of soils and peatlands. Although described members of this genus are characterized as possessing hydrolytic capabilities, the ability to degrade chitin has not yet been reported for these bacteria. In this study, a novel Singulisphaera representative, strain Ch08, was isolated from a chitinolytic enrichment culture obtained from a boreal fen in Northern European Russia. The 16S rRNA gene sequence of this isolate displayed 98.2% similarity to that of Singulisphaera acidiphila MOB10T. Substrate utilization tests confirmed that strain Ch08 is capable of growth on amorphous chitin. The complete genome of strain Ch08 determined in this study was 10.85 Mb in size and encoded two predicted chitinases, which were only distantly related to each other and affiliated with the glycoside hydrolase family GH18. One of these chitinases had a close homologue in the genome of S. acidiphila MOB10T. The experimental verification of S. acidiphila MOB10T growth on amorphous chitin was also positive. Transcriptome analysis performed with glucose- and chitin-growth cells of strain Ch08 showed upregulation of the predicted chitinase shared by strain Ch08 and S. acidiphila MOB10T. The gene encoding this protein was expressed in Escherichia coli, and the endochitinase activity of the recombinant enzyme was confirmed. The ability to utilize chitin, a major constituent of fungal cell walls and arthropod exoskeletons, appears to be one of the previously unrecognized ecological functions of Singulisphaera-like planctomycetes.

Genetic resistance and silicon in the control of stem rot in Capsicum spp.

Pepper stem rot is a disease caused by Sclerotium delphinii, a necrotrophic pathogen and a natural soil inhabitant. Identifying genotypes of Capsicum resistant to the pathogen and applying silicon (Si) can be effective management measures. The objective of the study was to identify sources of resistance in 24 accessions of Capsicum spp. against S. delphinii, and to evaluate the potential of sodium silicate (Si) to induce resistance. Two experiments were conducted: In Experiment I, the resistance reaction of Capsicum in a greenhouse was evaluated. The experiment was conducted in two periods of the year (July and November 2019). In Experiment II, the effect of Si on Capsicum resistance was evaluated. The experimental design used in Experiment I employed randomized blocks in a factorial design of 2 (isolates) x 24 (accessions), with five replications. For Experiment II, six accessions were selected with contrasting resistance responses observed in Experiment I, in a factorial design of 1 (isolate) x 6 (accessions) x 4 (doses: 0.0, 0.025, 0.05, and 0.1 mL per vase). Accessions BGH 71 and BAGC 134 showed greater resistance to the pathogen. Accession BAGC 134 demonstrated high resistance stability in both periods and against the two isolates tested. Si doses had no significant effect on the resistance reaction. Therefore, the genotypes BGH 71 and BAGC 134 have the potential to be used in breeding programs for Capsicum for resistance to S. delphinii for control of stem rot.

Impact of earthworms on antibiotic resistance genes removal in ampicillin-contaminated soil through bacterial community alteration.

The emergence of antibiotic resistance genes (ARGs) as contaminants in soil poses a significant threat to public health. Earthworms (Eisenia foetida), which are common inhabitants of soil, have been extensively studied for their influence on ARGs. However, the specific impact of earthworms on penicillin-related ARGs remains unclear. In this study, we investigate the role of earthworms in mitigating ARGs, specifically penicillin-related ARGs, in ampicillin-contaminated soil. Utilizing high-throughput quantitative PCR (HT-qPCR), we quantified a significant reduction in the relative abundance of penicillin-related ARGs in soil treated with earthworms, showing a decrease with a p-value of <0.01. Furthermore, high-throughput 16S rRNA gene sequencing revealed that earthworm intervention markedly alters the microbial community structure, notably enhancing the prevalence of specific bacterial phyla such as Proteobacteria, Firmicutes, Chloroflexi, and Tenericutes. Our findings not only demonstrate the effectiveness of earthworms in reducing the environmental load of penicillin-related ARGs but also provide insight into the alteration of microbial communities as a potential mechanism. This research contributes to our understanding of the role of earthworms in mitigating the spread of antibiotic resistance and provides valuable insights for the development of strategies to combat this global health issue.

Trichoderma harzianum enhances root biomass production and promotes lateral root growth of soybean and common bean under drought stress

AbstractDrought stress (DS) is one of the main environmental stresses that determines crop productivity. It has been estimated that DS depresses over 40%–60% of soybean (Glycine max (L.) Merr.) and common bean (Phaseolus vulgaris L.) production worldwide, respectively. Although different agronomic strategies are sometimes implemented, the current goal in sustainable agriculture could involve the inoculation with native microorganisms to mitigate DS effects. A potential fungal candidate is Trichoderma, which is recognized as a ubiquitous soil inhabitant with growth‐promoting and biocontrol potentiality. However, its potential for mitigating the stress for water deficit is less well‐documented. Our objective was to evaluate the effect of inoculation with native Trichoderma harzianum strains on soybean and common bean growth under contrasting conditions of water availability. Seeds were independently inoculated (or not) with IB‐J15 and IB‐363 strains, and plants were submitted to DS or were kept under optimal irrigation (well‐watered, WW). In both legumes, the most evident effect after being inoculated was the modification of plant root architecture, the increase in root area and the development of lateral roots in plants under WW and DS conditions. In soybean, both Trichoderma strains had a positive inoculation response, both fresh and dry root biomass increased under WW, and remarkably under DS conditions. The main effect was an increase of about 110% in root dry weight under WW and, about 330% in DS in plants inoculated with IB‐J15 strain, meanwhile, plants inoculated with IB‐363 increased root dry weight 60% in WW and 177% in DS conditions. Notably in soybean, the inoculation with both Trichoderma strains increased the root area more than 70% in both WW and DS conditions. Common beans inoculated with IB‐363 under WW conditions, reached a positive inoculation responsiveness of around 247% in shoot dry weight biomass, and under WW both strains increased the root area more than 50%. Further, IB‐363 increased leaf area by 25% in WW and 72% in DS. Additionally, the in vitro co‐culture between both Trichoderma strains and nodulating Rhizobium etli and Bradyrhizobium japonicum E109 showed compatibility between microorganisms, since no inhibition of their growth was observed. We emphasize that plants inoculated with Trichoderma showed better resistance to water deficit, as seen by redistribution of photosynthates, prioritizing mainly, the development of the root system. © 2024 Association of Applied Biologists.

Maize Aspergillus section Flavi isolate diversity may be distinct from that of soil and subsequently the source of aflatoxin contamination

Aspergillus section Flavi (Flavi) is a diverse group of fungal species whose common members include A. flavus and A. parasiticus. These are well-known for the production of aflatoxin (AF) B and G and other toxic metabolites, like cyclopiazonic acid (CPA). They are saprophytic soil dwellers and also become crop opportunistic epiphytes. The consequence is contamination of the crop with mycotoxins, such as carcinogenic AF. We investigated the Flavi community structure of maize and that of their surrounding soil, including their mycotoxigenicity. Furthermore, we investigated the link of the maize Flavi diversity with preharvest maize AF levels. The study was carried out in four selected districts of Zambia, in a low rainfall zone. The Flavi characterisation was triphasic, involving morphological (colony colour and sclerotia formation), metabolic (AF and CPA production) and genetic (calmodulin gene polymorphism) analyses. Flavi abundance was determined by dilution plate technique on modified rose Bengal agar. Results showed that Flavi communities on maize and in soil differed. Maize had a higher Flavi species diversity than soil. A. parasiticus dominated the soil community by frequency of field appearance (85%), while maize was dominated by A. minisclerotigenes (45%). CPA-producers with or without AF production dominated the maize (65%) while producers of only AF (B/G) dominated the soil (88%). The ratio between maize A. parasiticus and A. minisclerotigenes abundance seemed to have had a bearing on the levels of AF in maize, with a ratio close to 1:1 having higher levels than a pure community of either A. parasiticus or A. minisclerotigenes.

Integrated omics approach reveals the molecular pathways activated in tomato by Kocuria rhizophila, a soil plant growth-promoting bacterium

Plant microbial biostimulants application has become a promising and eco-friendly agricultural strategy to improve crop yields, reducing chemical inputs for more sustainable cropping systems. The soil dwelling bacterium Kocuria rhizophila was previously characterized as Plant Growth Promoting Bacteria (PGPB) for its multiple PGP traits, such as indole-3-acetic acid production, phosphate solubilization capability and salt and drought stress tolerance. Here, we evaluated by a multi-omics approach, the PGP activity of K. rhizophila on tomato, revealing the molecular pathways by which it promotes plant growth. Transcriptomic analysis showed several up-regulated genes mainly related to amino acid metabolism, cell wall organization, lipid and secondary metabolism, together with a modulation in the DNA methylation profile, after PGPB inoculation. In agreement, proteins involved in photosynthesis, cell division, and plant growth were highly accumulated by K. rhizophila. Furthermore, “amino acid and peptides”, “monosaccharides”, and “TCA” classes of metabolites resulted the most affected by PGPB treatment, as well as dopamine, a catecholamine neurotransmitter mediating plant growth through S-adenosylmethionine decarboxylase (SAMDC), a gene enhancing the vegetative growth, up-regulated in tomato by K. rhizophila treatment. Interestingly, eight gene modules well correlated with differentially accumulated proteins (DAPs) and metabolites (DAMs), among which two modules showed the highest correlation with nine proteins, including a nucleoside diphosphate kinase, and cytosolic ascorbate peroxidase, as well as with several amino acids and metabolites involved in TCA cycle. Overall, our findings highlighted that sugars and amino acids, energy regulators, involved in tomato plant growth, were strongly modulated by the K. rhizophila-plant interaction.

Contractile vacuoles: a rapidly expanding (and occasionally diminishing?) understanding

Osmoregulation is the homeostatic mechanism essential for the survival of organisms in hypoosmotic and hyperosmotic conditions. In freshwater or soil dwelling protists this is frequently achieved through the action of an osmoregulatory organelle, the contractile vacuole. This endomembrane organelle responds to the osmotic challenges and compensates by collecting and expelling the excess water to maintain the cellular osmolarity. As compared with other endomembrane organelles, this organelle is underappreciated and under-studied. Here we review the reported presence or absence of contractile vacuoles across eukaryotic diversity, as well as the observed variability in the structure, function, and molecular machinery of this organelle. Our findings highlight the challenges and opportunities for constructing cellular and evolutionary models for this intriguing organelle.

Agrobacteria deploy two classes of His-Me finger superfamily nuclease effectors exerting different antibacterial capacities against specific bacterial competitors.

The type VI secretion system (T6SS) assembles into a contractile nanomachine to inject effectors across bacterial membranes for secretion. The Agrobacterium tumefaciens species complex is a group of soil inhabitants and phytopathogens that deploys T6SS as an antibacterial weapon against bacterial competitors at both inter-species and intra-species levels. The A. tumefaciens strain 1D1609 genome encodes one main T6SS gene cluster and four vrgG genes (i.e., vgrGa-d), each encoding a spike protein as an effector carrier. A previous study reported that vgrGa-associated gene 2, named v2a, encodes a His-Me finger nuclease toxin (also named HNH/ENDO VII nuclease), contributing to DNase-mediated antibacterial activity. However, the functions and roles of other putative effectors remain unknown. In this study, we identified vgrGc-associated gene 2 (v2c) that encodes another His-Me finger nuclease but with a distinct Serine Histidine Histidine (SHH) motif that differs from the AHH motif of V2a. We demonstrated that the ectopic expression of V2c caused growth inhibition, plasmid DNA degradation, and cell elongation in Escherichia coli using DNAse activity assay and fluorescence microscopy. The cognate immunity protein, V3c, neutralizes the DNase activity and rescues the phenotypes of growth inhibition and cell elongation. Ectopic expression of V2c DNase-inactive variants retains the cell elongation phenotype, while V2a induces cell elongation in a DNase-mediated manner. We also showed that the amino acids of conserved SHH and HNH motifs are responsible for the V2c DNase activity in vivo and in vitro. Notably, V2c also mediated the DNA degradation and cell elongation of the target cell in the context of interbacterial competition. Importantly, V2a and V2c exhibit different capacities against different bacterial species and function synergistically to exert stronger antibacterial activity against the soft rot phytopathogen, Dickeya dadantii.

Chromobacterium violaceum Infection in a Domestic Shorthaired Cat with Dog Bite Wounds

Chromobacterium violaceum is a motile, facultative anaerobe and Gram-negative Bacillus, a common inhabitant of soil and water in tropical and subtropical regions. Chromobacterium violaceum is recognised as an opportunistic pathogen of humans and animals. Although rare, a few chromobacteriosis cases were reported in humans and several species of animals. However, there is no published report of Chromobacterium infection in cats. This report describes a C. violaceum infection in a cat with a history of non-healing dog bite wounds. The bacterial culture of the wounds revealed pure growth of C. violaceum on both aerobic and anaerobic cultures. The infection in this cat was successfully treated after changing the antibiotic to enrofloxacin based on an antibiotic sensitivity test (AST). This case demonstrates the importance of culture and AST tests in non-healing wounds. Chromobacteriosis can be included in the differentials, especially if wounds are contaminated by soil or stagnant water.

Beneath the Surface: Investigating soil microbial and metazoa communities at various depths in a natural desert ecosystem inhabited by Karelinia caspia

Soil organisms play a pivotal role in terrestrial ecosystems, sparking growing curiosity about the comprehensive diversity of subterranean biota across large ecological levels. Soil inhabitants’ exhibit varied responses to soil physicochemical properties (SPPs) across desert ecosystem. Yet, the knowledge of their population dynamics across different soil depths (SDs) in the indigenous natural dominant zone of Karelinia caspia, a primary desert shrub in China, remains limited. This study employed advanced illumina sequencing to assess soil bacteria, fungi, archaea, protist, and metazoa populations across six distinct SDs (0 to 100 cm) within the K. caspia desert landscape. Our findings indicate a descending alpha diversity pattern in bacteria, archaea, and protists as soil depth increases, contrary to fungi and metazoa, which exhibit the opposite trend. SDs significantly shape soil biota beta diversity, notably impacting bacteria, protists, and fungi, as revealed by Non-Metric Dimensional Scaling. Prominent classes include Actinobacteria, Sordariomycetes, Nitrososphaeria, Spirotrichea, and Nematoda for soil bacteria, fungi, archaea, protists, and metazoa, respectively. Correlation analysis between predominant biotic communities' vertical distribution and SPPs variations revealed total potassium (TK) and pH's pronounced influence on bacteria, while fungi were affected by total nitrogen (TN) and soil water content (SWC). Archaea exhibit sensitivity to SWC, available potassium (AK), and available phosphorus (AP); protists respond to C/N-Ratio, nitrate (NO3), and total phosphorus (TP); metazoa correlate with SWC, pH, and NO3. Overall, these findings offer valuable insights regarding population fluctuations of soil biota within naturally established K. caspia across vertical soil strata within China's desert ecosystem.

Detection of the Effects of Root Exudates (Diffusates) on Nematode Hatching and Attraction.

Plant-parasitic nematodes have enormous economic and social impacts. The majority of plant-parasitic nematodes are soil dwelling and feed on plant roots. Exudates from actively growing roots initiate hatch of some nematode species, thus ensuring infective juveniles emerge in close proximity to host plant roots. Several gradients of volatile and non-volatile compounds are established around plant roots, at least some of which are used by nematodes to orientate toward the roots. Plant-parasitic nematodes are microscopic in size (less than 1mm in length and between 15 and 20μm in diameter), so investigations into behavior are challenging. Various in vitro techniques have been used to evaluate the effects of root exudates. The techniques can also be used to evaluate the comparative attractiveness of different plants or cultivars of the same plant species. This chapter describes some examples of different types of basic in vitro assays.

Fungitoxic effect and phytochemical characteristics of Brazilian Cerrado weeds against Rhizoctonia solani and Macrophomina phaseolina fungi.

The use of natural products obtained from plants, for example, invasive plants, offers a variety of allelochemicals with fungicidal potential. With this in perspective, the objective was to evaluate the fungicidal potential of ethanolic extracts of Cerrado plants on Rhizoctonia solani and Macrophomina phaseolina. The ethanolic hydroalcoholic extract of the 12 plants identified as invaders in the Brazilian Cerrado was prepared (Anacardium humile Saint Hill; Baccharis dracunculifolia DC.; Cenchrus echinatus L; Commelina erecta L.; Erigeron bonariensis L.; Digitaria horizontalis Willd.; Digitaria insularis L.; Porophyllum ruderale Jacq. Cass; Richardia brasiliensis Gomes; Sida rhombifolia L.; Turnera ulmifolia L.; Smilax fluminensis Steud)) and phytochemical screening and determination of total phenols and flavonoids were performed. To evaluate the in vitro antifungal activity, the hydroalcoholic solutions at concentrations of 800, 1200, 1600, 2000, and 2400 µL 100 mL-1 were separately incorporated into BDA agar and poured into Petri dishes, followed by the mycelium disk of the fungus. As a control, two solutions were prepared, one ethanolic solution added to the BDA medium (2400 µg 100 mL-1) and the other with BDA medium only. They were poured into Petri dishes, followed by a 0.5 cm diameter disk of mycelium of the fungus, incubated (23±2 ºC), with a 24-hour photoperiod. Among the constituents found in the plants, 75% are phenolic compounds, 58.3% are cardiotonic heterosides, 50% are steroids, 33.3% are flavonoids, 16.7% are anthraquinones, and 8.3% are alkaloids, saponins, and reducing sugars. Out of the 12 species, only the extracts of C. erecta and R. brasiliensis were active for M. phaseolina and R. solani. Thus, it is concluded that the ethanolic extract of C. erecta has the fungicidal potential to control diseases caused by fungi that are soil inhabitants. Of the other species, A. humille, B. dracuncufolia, D. insulares, C. erecta, D. insulares, P. ruderale, and R. brasiliensis have natural fungitoxic potential because they stand out in the content of polyphenols efficient in reducing the mycelial growth of M. phaseolina and R. solani.