Soil Β-glucosidase Research Articles

Relationships between yield, enzymatic activity, and chemical properties across different soil layers and phenological stages of grapevines in southern Brazil

The activities of the enzymes β-glucosidase (GLU) and arylsulfatase (ARYL) in annual crop soils can now be determined in several commercial laboratories in Brazil. The results are used to assess soil quality and recommend management practices. However, this technology is not yet available for vineyards. The objective of this study was to evaluate whether the activities of soil GLU and ARYL enzymes are related to grapevine yield and chemical properties in sandy vineyard soils, and to define the phenological stage of the crop and the soil sampling layer that best characterize these relationships. Soil and plant samples were collected in a commercial Vitis vinifera L. vineyard located in the extreme south of Brazil during the 2022/23. The soil was sampled in three layers (0–0.05, 0–0.10, and 0–0.20 m) and at four phenological stages (bud burst, full flowering, veraison, and post-harvest). The activities of the soil enzymes GLU and ARYL, the nutrient content of the soil and the leaf, the quality of the must, and the relative yield (RY) of the grapevine were evaluated. The RY was related to the activity of these enzymes. The best regression model adjustments were observed after harvest and in the 0–0.10 m layer. Enzyme activity was also significantly related to soil organic C and total N, as well as other soil properties, mainly P, K, Ca, Mg, Zn, and Mn. The activities of GLU and ARYL enzymes were related to grapevine yield and chemical properties in sandy vineyard soils and soil sampling in the 0–0.10 m layer after harvest is recommended.

Characteristics of Rhizosphere Microbiome, Soil Chemical Properties, and Plant Biomass and Nutrients in Citrus reticulata cv. Shatangju Exposed to Increasing Soil Cu Levels.

The prolonged utilization of copper (Cu)-containing fungicides results in Cu accumulation and affects soil ecological health. Thus, a pot experiment was conducted using Citrus reticulata cv. Shatangju with five Cu levels (38, 108, 178, 318, and 388 mg kg-1) to evaluate the impacts of the soil microbial processes, chemistry properties, and citrus growth. These results revealed that, with the soil Cu levels increased, the soil total Cu (TCu), available Cu (ACu), organic matter (SOM), available potassium (AK), and pH increased while the soil available phosphorus (AP) and alkali-hydrolyzable nitrogen (AN) decreased. Moreover, the soil extracellular enzyme activities related to C and P metabolism decreased while the enzymes related to N metabolism increased, and the expression of soil genes involved in C, N, and P cycling was regulated. Moreover, it was observed that tolerant microorganisms (e.g., p_Proteobacteria, p_Actinobacteria, g_Lysobacter, g_Sphingobium, f_Aspergillaceae, and g_Penicillium) were enriched but sensitive taxa (p_Myxococcota) were suppressed in the citrus rhizosphere. The citrus biomass was mainly positively correlated with soil AN and AP; plant N and P were mainly positively correlated with soil AP, AN, and acid phosphatase (ACP); and plant K was mainly negatively related with soil β-glucosidase (βG) and positively related with the soil fungal Shannon index. The dominant bacterial taxa p_Actinobacteriota presented positively correlated with the plant biomass and plant N, P, and K and was negatively correlated with plant Cu. The dominant fungal taxa p_Ascomycota was positively related to plant Cu but negatively with the plant biomass and plant N, P, and K. Notably, arbuscular mycorrhizal fungi (p_Glomeromycota) were positively related with plant P below soil Cu 108 mg kg-1, and pathogenic fungi (p_Mortierellomycota) was negatively correlated with plant K above soil Cu 178 mg kg-1. These findings provided a new perspective on soil microbes and chemistry properties and the healthy development of the citrus industry at increasing soil Cu levels.

Composted maize straw under fungi inoculation reduces soil N2O emissions and mitigates the microbial N limitation in a wheat upland

Enhancement of microbial assimilation of inorganic nitrogen (N) by straw addition is believed to be an effective pathway to improve farmland N cycling. However, the effectiveness of differently pretreated straws on soil N2O emissions and soil N-acquiring enzyme activities remains unclear. In this study, a pot experiment with four treatments (I, no addition, CK; II, respective addition of maize straw, S; III, composted maize straw under no fungi inoculation, SC; and IV, composted maize straw under fungi inoculation, SCPA) at the same quantity of carbon (C) input was conducted under the same amount of inorganic N fertilization. Results showed that the seasonal cumulative N2O emissions following the SCPA treatment were the lowest at 4.03 kg N ha−1, representing a significant reduction of 19 % compared with the CK treatment. The S and SC treatments had no significant effects on N2O emissions. The decrease of soil N2O emissions following the SCPA treatment was mainly attributed to the increase of microbial N assimilation and the increased abundance of functional genes related to N2O reductase. The SCPA treatment significantly decreased soil alkaline phosphatase (ALP) activity and increased leucine aminopeptidase (LAP) activity at the basal fertilization, while increased soil ALP and LAP activity, decreased soil N-Acetyl-β-D-Glucosidase (NAG) activity at harvest. Compared with the CK treatment, the S, SC, and SCPA treatment significantly increased soil β-glucosidase (β-GC) activity at harvest. The decrease in the (NAG+LAP)/ALP ratio following the SCPA treatment indicated that the composted maize straw under fungi inoculation alleviated microbial N limitation at harvest. Moreover, PICRUSt analysis also suggested that the SCPA treatment increased the abundance of bacterial genes associated with N assimilation and N2O reduction, whereas the S and SC treatment did not significantly affect the abundance of N2O reduction genes compared with the CK treatment. Our results suggest that the composted maize straw under fungi inoculation would reduce the risk of N2O emissions and effectively mitigate the microbial N limitation in dryland wheat system.

Mosaic coexistence of two subalpine grassland types as a consequence of soil nutrient heterogeneity

High-mountain areas often exhibit high soil heterogeneity, which allows for the close coexistence of plant species and communities with contrasting resource requirements. This study investigated the nutritional factors driving the mosaic distribution of Nardus stricta L. grasslands and chalk grasslands dominated by forbs in the subalpine southern Pyrenees (Spain). The concentrations of C, N, P, S, K, Ca and fiber fractions in herbage were analyzed in relation to soil nutrient availability; soil β-glucosidase, urease, phosphatase and arylsulfatase activities; and plant species and functional type compositions. The chalk grassland showed higher N:P ratios in herbage and higher enzyme demand for P relative to N in the soil, which indicates a greater limitation of P versus N compared to Nardus grassland. This limitation was related to the higher soil and plant Ca levels in the chalk grassland, where the calcareous bedrock lies close to the soil surface. In the Nardus grasslands, the alleviation of P limitation translated into increased productivity and the replacement of forbs with taller graminoids rich in structural carbohydrates, which was mirrored by greater β-D-glucosidase activity. The plant N:K and P:K ratios indicated potential K deficiency in both grasslands, which resulted from decreased uptake of K in competition with Ca, as indicated by the correlation between plant K and the soil K+:Ca2+ ratio. Our results highlight the effect of the heterogeneity of soil nutrient constraints, mediated by stoichiometry and dependent on microtopography, on the biodiversity of high-mountain ecosystems.

Long-term residue returning increased subsoil carbon quality in a rice-wheat cropping system

Residue returning (RR) was widely implemented to increase soil organic carbon (SOC) in farmland. Extensive studies concentrated on the effects of RR on SOC quantity instead of SOC fractions at aggregate scales. This study investigated the effects of 20-year RR on the distribution of labile (e.g., dissolved, microbial biomass, and permanganate oxidizable organic) and stable (e.g., microbial necromass) carbon fractions at aggregate scales, as well as their contribution to SOC accumulation and mineralization. The findings indicated a synchronized variation in the carbon content of bacterial and fungal necromass. Residue retention (RR) notably elevated the concentration of bacterial and fungal necromass carbon, while it did not amplify the microbial necromass carbon (MNC) contribution to SOC when compared to residue removal (R0) in the topsoil (0–5 cm). In the subsoil (5–15 cm), RR increased the MNC contribution to SOC concentration by 21.2%–33.4% and mitigated SOC mineralization by 12.6% in micro-aggregates (P < 0.05). Besides, RR increased soil β-glucosidase and peroxidase activities but decreased soil phenol oxidase activity in micro-aggregates (P < 0.05). These indicated that RR might accelerate cellulose degradation and conversion to stable microbial necromass C, and thus RR improved SOC stability because SOC occluded in micro-aggregates were more stable. Interestingly, SOC concentration was mainly regulated by MNC, while SOC mineralization was by dissolved organic carbon under RR, both of which were affected by soil carbon, nitrogen, and phosphorus associated nutrients and enzyme activities. The findings of this study emphasize that the paths of RR-induced SOC accumulation and mineralization were different, and depended on stable and labile C, respectively. Overall, long-term RR increased topsoil carbon quantity and subsoil carbon quality.

Temperature Matters More than Fertilization for Straw Decomposition in the Soil of Greenhouse Vegetable Field

As the largest organic carbon input to agroecosystems, crop straw can solve the problem of soil quality degradation in greenhouse vegetable fields, harmonize the balance between soil nutrients and energy, and improve soil quality to maintain the sustainable production of greenhouse vegetables. However, the microbial mechanism of the straw decomposition process under different temperatures and fertilization treatments in greenhouse vegetable soils has not been clarified. Soil samples were used to investigate the biology of straw decomposition in the soil at three incubation temperatures (15, 25, and 35 °C) through a soil incubation experiment (60 d) under different fertilization treatments. Fertilization treatments for this long-term field experiment included chemical fertilizer (CF), substitution of half of the chemical N fertilizer with manure (CM), straw (CS), or combined manure and straw (CMS). The results showed that soil hydrolase activities tended to decrease with increasing temperature during straw decomposition. Compared with the CF, organic substitutions (CM, CMS, and CS) increased soil β-glucosidase, β-cellobiosidase, N-acetyl-glucosaminidase, and β-xylosidase activities during straw decomposition. Soil CO2 emission rates were the highest at each incubation temperature on the first day, rapidly declining at 25 °C and 35 °C and slowly declining at 15 °C. The soil CO2 cumulative emissions tended to increase with increasing temperature under different fertilization treatments. PCA showed that the responses of soil enzyme activities to temperature at 7, 15, and 30 d of straw decomposition were stronger than those of fertilization. In summary, both fertilization treatment and incubation temperature could influence soil CO2 emissions by affecting soil physicochemical properties and enzyme activities during straw decomposition, whereas incubation temperature had a stronger effect on straw decomposition than fertilization, as indicated by PLS-PM and three-way ANOVA. Considering the influence for fertilization on the straw decomposition process at different incubation temperatures, the straw applications (CMS and CS) were more suitable to temperature changes.

Changes in root metabolites and soil microbial community structures in rhizospheres of sugarcanes under different propagation methods.

Root metabolites and soil microbial community structure in the rhizosphere play critical roles in crop growth. Here, we assessed the efficiency of conventional and tissue culture propagation methods in modulating the soil health and microbiota in the rhizosphere of sugarcane (Saccharum officinarum L.) plants. The seeding canes were obtained using newly planted and two-year ratooned canes propagated by conventional (CSN and CSR) or tissue culture (TCN and TCR) methods. Changes in soil fertility, root metabolites and soil microbial community structure in the rhizosphere of sugarcane plants obtained using these canes were assessed. The activities of soil β-glucosidase and aminopeptidase, soil microbial biomass nitrogen, and abundances of soil beneficial microbes, both at phyla and genera levels, were significantly higher in the rhizosphere of sugarcane plants in TCN and TCR treatments than those in that of plants in CSN and CSR treatments. Furthermore, flavonoid and flavonol biosynthesis and alanine, aspartate and glutamate metabolism were significantly upregulated in the roots of TCR and TCN plants compared with those in the roots of CSN and CSR plants. These results suggest that the tissue culture propagation method is a sustainable method for sugarcane cultivation to improve soil fertility and health in sugarcane rhizosphere.

Phosphate-solubilizing fungi enhances the growth of Brassica chinensis L. and reduces arsenic uptake by reshaping the rhizosphere microbial community.

High concentrations of arsenic in soil and plant systems are a threat to human health and ecosystems. The levels of phosphate ions in the soil strongly influence the soil efficacy and arsenic absorption by plants. This study investigated the effects of phosphate-solubilizing fungi (PSF) on environmental factors and structural changes in microbial community in soils contaminated with arsenic. Four experimental groups were created: control (CK), Penicillium GYAHH-CCT186 (W186), Aspergillus AHBB-CT196 (W196), and Penicillium GYAHH-CCT186 + Aspergillus AHBB-CT196 (W186 + W196), with Pakchoi (Brassica chinensis L.) as the test plant. Analysis of altered nutrient levels, enzyme activities and microbial community structure in the soil as well as the growth and physiological characteristics of Pakchoi, revealed a significant increase in the available phosphorus (AP), organic matter (OM), cation exchange capacity (CEC) and available arsenic (AAs) content of the soil following W186 + W196, W196 and W186 treatments. All experimental treatments enhanced the activity of soil β-glucosidase (β-GC) and soil catalase (S-CAT). W186 + W196 and W196 treatments significantly enhanced soil acid phosphatase (S-ACP) activity. Besides, W186 + W196 treatment significantly induced dehydrogenase (S-DHA) activity. Further, of the treatment with PSF increased the fresh weight, root length, plant height and chlorophyll levels while decreasing the arsenic accumulation in Pakchoi. Exposure to PSF also increased the activity of Ascomycota, Basidiomycota, Chytridiomycota, unclassified_Fungi, Mortierellomycota, Cryptomycota and Rozellomycota in the soil. The relative abundance of Ascomycota, Basidiomycota, and Mortierellomycota was positively correlated with the available nutrients (except iron) in the soil as well as enzyme activities. Consequently, the PSF improved the quality of soil and the safety of Pakchoi, suggesting that PSF can be utilized for the remediation of arsenic-contaminated soil.

Understory vegetation had important impact on soil microbial characteristics than canopy tree under N addition in a Pinus tabuliformis plantation

Forest ecosystem is a complex community, and its soil microbes play a vital role in global matter cycling. However, the patterns of rhizosphere soil microbial characteristics among tree-shrub-grass and their responses to nitrogen (N) deposition are still unclear. This study evaluated the microbial biomasses, processes (gas fluxes), and enzyme activities in the rhizosphere soils of tree (Pinus tabuliformis), shrub (Rosa xanthina), and grass (Carex lanceolata) and their responses to N addition (0, 3, 6, 9 g N m−2 y−1 corresponding to N0, N3, N6, N9) in a P. tabuliformis plantation. (1) Microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), microbial biomass phosphorus (MBP) contents, as well as CO2, CH4 flux rates in the rhizosphere soil of C. lanceolata were significantly higher than those in the rhizosphere soils of P. tabuliformis and R. xanthina (P < 0.05). The activities of alkaline phosphatase (ALT), leucine aminopeptidase (LAP), β-glucosidase (BG), D-cellulosidase (CBH), N-acetyl-glucosaminidase (NAG), and xylosidase (XYL) in the rhizosphere soils of C. lanceolata and R. xanthina were significantly higher than those in the rhizosphere soil of P. tabuliformis. (2) Soil MBC content, N2O, and CH4 flux rates increased after N addition, while the CO2 flux rate decreased. MBP content initially increased and then reduced with N additions, and the maximum values observed in N3 or N9 treatments. (3) In the rhizosphere soil of P. tabuliformis, N addition enhanced the NAG, BG, CBH, and XYL activities. While low N increased and high N decreased these enzyme activities in the rhizosphere soils of C. lanceolata and R. xanthina, with the maximum values obtained in N3 treatment. (4) N addition directly reduced the CO2 flux rate and indirectly enhanced the gas flux rate by increasing soil MBC and MBP contents. Species change indirectly affected the microbial biomass and enzyme activity by altering soil chemical properties, which eventually affected gas flux rates. Our study emphasizes the effects of tree-shrub-grass on soil microbial characteristics, which can improve the evaluation of soil ecological processes and responses to N deposition in forest ecosystems.

Soil macroporosity modulates the extent of negative microbial associations during organic substance decomposition

Microbial species interactions are expected to influence the community-level properties, such as the production of extracellular enzymes and the degradation of organic substances. This work examined how microbial diversity, composition and the overall sign of microbial associations were altered with soil texture and structure following the amendment of organic substances. Two sets of microcosms (1:100 and 1:1) of a 4 × 3 factorial design were constructed, with four artificial textural classes (a sandy loam, two loams, and a (silty) clay loam) and three organics (TSB, tryptic soy broth; CA, a mixture of cellulose and humic/fulvic acids; BS, barley straw). As the ‘microbial inoculant’, an agricultural soil was added to the 1:100 and 1:1 microcosms at 1% and 50%, respectively. A few of microbial taxa were specifically enriched after soil addition of TSB, CA, or BS, but distributions across textural classes were inconsistent between microcosms or between organic amendments. Regardless, top abundant bacterial and fungal OTUs were overall negatively associated, suggesting that microbial competition for the shared resource dominated the decomposition of both simple and complex organics. Microbial associations were also modified by soil pore size distribution (PSD), being fewer negative (or more positive) in soils of greater macroporosity than in soils of lower macroporosity. The PSD-based differences in microbial associations were coordinated with PSD-based differences in the activities of exoglucanase and β-glucosidase in TSB-amended soils or soil respiration characteristics in CA-amended soils. Our results provide new insight into how soil structure regulates microbial interactions and, accordingly, the degradation of organic matter.

Synergistic effect on soil health from combined application of biogas slurry and biochar

Biogas slurry and biochar, as typical by-products and derivatives of organic waste, have been applied in agricultural production to improve the soil carbon (C) pool. However, whether the combined application of biogas slurry and biochar produces synergistic effects on the soil C pool and soil health requires quantitative clarification. In this study, we performed a pot experiment to analyze the changes of soil organic carbon (SOC), potassium permanganate-oxidized carbon (POXC), mineralizable carbon (MC), soil β-glucosidase (S-β-GC), and soil protein (SP) in different treatments at the flowering and fruit-setting stages, and full fruit stage of tomato by establishing two base fertilizer modes (base fertilizer N and base biogas slurry N), three topdressing modes (topdressing chemical fertilizer N, topdressing 50% biogas slurry N + 50% chemical fertilizer N, and topdressing biogas slurry N), and two biochar levels (no addition and 3% biochar addition). During the full fruit period, the SOC content of bottom applications of biogas slurry and topdressings of biogas slurry significantly increased by 9.92–15.52% and 13.02–18.26%, respectively (P < 0.05), when compared to chemical fertilizer bottom applications and topdressings of chemical fertilizer. When compared to non-biochar treatment, the SOC content of the biochar considerably increased by 52.56–58.94% (P < 0.05). Moreover, biogas slurry treatment increased the MC, steady-state C, and C pool index, and decreased the S-β-GC, C pool efficiency, C pool activity, and C pool activity index. Application of biogas slurry initially reduced POXC, SP, the C pool management index, and the soil quality index; nonetheless, these indicators eventually recovered or even exceeded the result of single application chemical fertilizer. Overall, the combined application of biogas slurry and biochar strongly increases the soil C pool, improves soil health, and reduces the short-term negative effects of using only biogas slurry.

Selective logging effects on plant functional traits depend on soil enzyme activity and nutrient cycling in a Pinus yunnanensis forest

Selective logging has a wide impact on the remaining trees and soils which in turn influences total ecosystem function. Lots of studies focus on effects of selective logging on changing of plant functional traits, but the mechanism underlying these effects is still unclear. Thus, we studied 6 plant functional traits including leaf N concentration (LNC), leaf P concentration (LPC), leaf N:P ratio (N:P), wood density (WD), specific leaf area (SLA), and leaf dry mass content (LDMC) typically associated with resource acquisition and allocation. We measured these traits across 13 tree species in 52 plots under 5 selective logging intensities in a Pinus yunnanensis forest and aimed to test how selective logging and soil factors affect community weighted mean (CWM) of plant functional traits. The results revealed significant positive correlations between LNC and LPC, LNC and SLA, LPC and SLA, N:P and LDMC. Significant negative correlations were found between LNC and LDMC, LPC and N:P, LPC and LDMC. Only soil β-glucosidase activity (SGA), soil phosphatase activity (SPA), soil total nitrogen (STN), soil total phosphorus (STP) and soil hydrolysable nitrogen (SHN) had a significant relationship with one or several of the 6 plant functional traits. Compared with the control group, there was little significant difference in all plant functional traits across the different selective logging intensities. However, for plant functional traits, selective logging significantly increased the LNC, LPC and SLA. For soil factors, selective logging significantly increased the SGA, soil urease activity (SUA), SPA, soil moisture (SM), STN, STP and SHN. Based on structural equation models, we found that although selective logging has no direct effect on plant functional traits, it can indirectly affect plant functional traits through soil factors, mainly soil enzyme activity and nutrient cycling. Meanwhile, the mechanism of selective logging affecting different functional traits may be varied. Our findings provide a theoretical basis for the scientific management of P. yunnanensis forest.

Distinct characteristics of the bacterial community in the rhizosphere soils of sweet potato storage roots and fibrous roots following long-term fertilization

Sweet potato (Ipomoea batatas Lam.) has two special root systems, namely, storage roots and fibrous roots. However, the response of the bacterial community characteristics in the rhizosphere soils of the two types of roots to long-term fertilization is not clear. Here, a long-term fertilization experiment was established under wheat–sweet potato crop rotation in 2011. We sampled the rhizosphere soils of storage roots and fibrous roots under three fertilization treatments (i.e., NK, no P; NPK, chemical P fertilizer; and NPKM, inorganic combined with organic fertilizers). The diversity and composition of the bacterial community and the relative abundance of specific bacterial taxa and their relationships with soil properties were investigated at the stage of sweet potato expansion. The results showed that compared to the NK treatment, the NPK treatment significantly increased soil available P (AP) in the rhizosphere of storage roots and fibrous roots by 503 % and 668 %, dissolved organic carbon (DOC) by 25 % and 18 %, and available K (AK) by 3.5 % and 12.3 %, respectively. However, compared to the NK treatment, the Chao1 index was significantly decreased under the NPK treatment in both storage roots and fibrous roots. In addition, compared to storage roots, bacterial α-diversity and soil β-glucosidase and alkaline phosphatase activities significantly improved in the rhizosphere of fibrous roots (P < 0.001) under the NPKM treatment. Chryseobacterium, Acinetobacter and Myroides were the dominant bacterial genera in the rhizosphere soil of storage roots under the NPKM treatment. Furthermore, principal coordinate analysis (PCoA) indicated that the structure of the bacterial community was markedly altered in the rhizosphere soils of storage roots and fibrous roots under the NPKM treatment. Moreover, a complex network of bacterial communities was formed in the rhizosphere of storage roots rather than that of fibrous roots. Based on redundancy analysis (RDA) and structural equation modeling (SEM), the results revealed that the diversity and structure of the bacterial community were primarily driven by the AK concentration in the rhizosphere soil of the storage roots. In summary, long-term fertilization reshaped the bacterial community in the rhizosphere soils of two types of sweet potato roots by altering the properties of the rhizosphere soils.

Conservation tillage increases surface soil organic carbon stock by altering fungal communities and enzyme activity.

Fungal communities play a key role in the decomposition of crop residues and affect soil organic carbon (SOC) dynamics. Conservation tillage enhances SOC sequestration and mitigate global climate change. However, the impact of long-term tillage practices on fungal community diversity and its relation to SOC stock remains unclear. The objectives of this study were to evaluate the relationship between extracellular enzyme activities and fungal community diversity and SOC stock under different tillage practices. A field experiment was conducted with four tillage practices: (i) no-tillage with straw removal (NT0), (ii) no-tillage with straw retention (NTSR, conservation tillage), (iii) plough tillage with straw retention (PTSR), and (iv) rotary tillage with straw retention (RTSR). The results showed that the SOC stock in NTSR was higher than other treatments in the 0-10 cm soil layer. Compared to NT0, NTSR significantly increased soil β-glucosidase, xylosidase, cellobiohydrolase, and chitinase activities at 0-10 cm soil depth (P < 0.05). However, different tillage methods with straw returning had no significant effects on enzyme activity at 0-10 cm soil depth. The observed species and Chao1 index of the fungal communities under NTSR were 22.8% and 32.1% lower than under RTSR in the 0-10 cm soil layer, respectively. The composition, structure, and co-occurrence network of fungal communities differed across tillage practices. A partial least squares path model (PLS-PM) analysis indicated that C-related enzymes were the most influential factors associated with SOC stock. Soil physicochemical properties and fungal communities affected extracellular enzyme activities. Overall, conservation tillage can promote surface SOC stock, which was associated with increased enzyme activity.

Ecotoxicity of soil Pb pollution reflected by soil β-glucosidase: Comparison of extracellular and intracellular enzyme pool

Lead (Pb) is a major environmental pollutant that threatens the soil environment and human health. Monitoring and assessing Pb toxicity on soil health are of paramount importance to the public. To use soil enzymes as biological indicators of Pb contamination, herein, the responses of soil β-glucosidase (BG) in different pools of soil (total, intracellular and extracellular enzyme) to Pb contamination were investigated. The results indicated that the intra-BG (intracellular BG) and extra-BG (extracellular BG) responded differently to Pb contamination. While the addition of Pb caused a significant inhibition of the intra-BG activities, the extra-BG activities were only slightly inhibited. Pb showed a non-competitive inhibition to extra-BG, while both non-competitive and uncompetitive inhibition were observed for intra-BG in the tested soils. The dose-response modeling was used to calculate ecological dose ED10, which represents the concentration of Pb pollutant that causes a 10 % reduction in Vmax, to express the ecological consequences of Pb contamination. A positive correlation was found between ecological dose ED10 values of intra-BG and soil total nitrogen (p < 0.05), which suggests soil properties may influence Pb toxicity to soil BG. Based on the differences in ED10 and inhibition rate among different enzyme pools, this study suggests that the intra-BG is more sensitive for Pb contamination assessment. From this, we propose that intra-BG should be considered when evaluating Pb contamination using soil enzymes as indicators.

Seasonal Dynamics of Soil Enzymatic Activity under Different Land-Use Types in Rocky Mountainous Region of North China

To reveal the effects of different land-use types on soil enzyme activities, soil samples were collected from 0–10, 10–20 and 20–30 cm soil layers to compare and analyze soil β-glucosidase (BG), urease (URE), protease (PROT) and catalase (CAT) activities in farmland (FL), abandoned land (AL) and three plantation forests: Platycladus orientalis (L.) Franco (PO), Robinia pseudoacacia L. (RP) and Quercus variabilis Bl. (QV) in the rocky mountainous region of North China. The results showed that the soil enzyme activities varied significantly under different land-use types, and the interannual mean values of FL and PO were remarkably higher than those of other land uses in the 0–30 cm soil layer, in which the soil BG and URE activities of FL were 22% and 12% higher than those of AL, and 428% and 179% higher than those of QV, respectively; the soil PROT and CAT activities of PO were 66% and 23% higher than those of AL, and 479% and 113% higher than those of QV, respectively. Soil BG, URE and PROT activities were all higher in June and lower in December, while soil CAT activity was slightly lower in June. The soil enzymatic activities all showed a notable decrease with the depth of the soil layer. Soil BG, URE, PROT and CAT activities were remarkably (p &lt; 0.01) or significantly (p &lt; 0.05) positively correlated with available nitrogen, available phosphorus, available potassium, dissolved organic carbon (DOC), NO3−-N, soil organic carbon, water content, clay and silt volume fraction, and significantly negatively correlated with sand volume fraction. Soil DOC and pH were important factors influencing soil enzymatic activity, implying that changes in soil enzymatic activity under different land-use types may be the result of a combination of temperature, moisture and plant type. In conclusion, PO plantations are conducive to improving the physicochemical and biological properties of soil and enhance soil fertility, which is a reasonable land-use method to achieve sustainable development in the rocky mountainous region of North China.

Short-term responses of soil nutrients and enzyme activities to nitrogen addition in a Larix principis-rupprechtii plantation in North China

Atmospheric nitrogen (N) deposition is among the main manifestations of global change and has profoundly affected forest biogeochemical cycles. However, the threshold of N deposition to soil nutrient contents and enzyme activities has rarely been studied in a forest. In this study, we explored the effects of N deposition on soil nutrients and enzyme activities in a Larix principis-rupprechtii plantation on the northern Yanshan Mountain through multigradient N addition experiments (0, 5, 10, 20, 40, 80, and 160 kg N ha−1 year−1) after fertilization for 2 years. Compared with the controls, N addition first led to a decrease in soil NH4+-N and NO3--N, which then increased significantly. N addition had no significant effects on other soil nutrients. N addition overall elevated soil β-glucosidase activity. N application of &amp;gt;40 kg N ha−1 year−1 significantly reduced soil leucine aminopeptidase activity but had no significant effects on soil acid phosphatase, N-acetyl-β-D-glucosidase, and urease activities. N addition increased the overall stoichiometry ratio of EEA C:N and EEA C:P, but EEA N:P started decreasing after N application of 40 kg N ha−1 year−1. The ratios of C, N, and P acquisition activities changed from 1:1.2:1 under the control conditions to 1:1.1:1 under the N application of 160 kg N ha−1 year−1. N addition increased the overall vector length and had no significant effects on the vector angle. Correlation and redundancy analyses revealed that N addition-induced change in available soil N was the main factor affecting soil enzyme activity and stoichiometry. In general, different enzyme activities had different sensitivities to N addition. Moderate N addition or atmospheric N deposition (e.g., &amp;lt;40 kg N ha−1 year−1) had beneficial effects on soil nutrient cycling and microorganisms in a Larix principis-rupprechtii plantation.

Grazing lowers soil multifunctionality but boosts soil microbial network complexity and stability in a subtropical grassland of China.

Long-term grazing profoundly affects grassland ecosystems, whereas how the soil microbiome and multiple soil ecosystem functions alter in response to two-decades of grazing, especially how soil microbiome (diversity, composition, network complexity, and stability) forms soil multifunctionality is rarely addressed. We used a long-term buffalo grazing grassland to measure the responses of soil physicochemical attributes, stoichiometry, enzyme activities, soil microbial niche width, structure, functions, and networks to grazing in a subtropical grassland of Guizhou Plateau, China. The evidence from this work suggested that grazing elevated the soil hardness, available calcium content, and available magnesium content by 6.5, 1.9, and 1.9 times (p = 0.00015-0.0160) and acid phosphatase activity, bulk density, pH by 59, 8, and 0.5 unit (p = 0.0014-0.0370), but decreased the soil water content, available phosphorus content, and multifunctionality by 47, 73, and 9-21% (p = 0.0250-0.0460), respectively. Grazing intensified the soil microbial carbon limitation (+78%, p = 0.0260) as indicated by the increased investment in the soil β-glucosidase activity (+90%, p = 0.0120). Grazing enhanced the complexity and stability of the bacterial and fungal networks but reduced the bacterial Simpson diversity (p < 0.05). The bacterial diversity, network complexity, and stability had positive effects, while bacterial and fungal compositions had negative effects on multifunctionality. This work is an original attempt to show that grazing lowered multifunctionality via the reduced bacterial diversity and shifted soil bacterial and fungal compositions rather than the enhanced bacterial and fungal network complexities and stability by grazing. Protecting the bacterial diversity from decreasing, optimizing the composition of bacteria and fungi, and enhancing the complexity and stability of bacterial network may be conducive to improving the soil multifunction of grazing grassland, on a subtropical grassland.

Combined effects of spent mushroom substrate and dicyandiamide on carbendazim dissipation in soils: Double-edged sword effects and potential risk controls

Repeated and high-dose carbendazim applications have caused serious soil carbendazim contamination, and eco-friendly and economical approaches have been suggested to promote carbendazim removal in agricultural soil. Spent mushroom substrate (SMS) is a special recycled resource after harvesting mushrooms and can be utilized in contaminated soil amendment. The SMS application into agricultural soil might increase antibiotic resistance gene abundances, and the health risks of SMS application might be reduced with reasonable management to adjust the related electron transport of soil nitrification or denitrification. In this study, the SMS and nitrification inhibitor dicyandiamide were used to remediate agricultural soil contaminated with the carbendazim, and the carbendazim contents, soil microbial biomass, activities and community and human disease genes were determined. Compared to the control treatment, the combined applications of SMS and dicyandiamide significantly decreased soil carbendazim content by 38.14% but significantly enhanced soil β-glucosidase, chitinase, arylsulfatase, urease and electron transfer system activities. The relative abundances of Proteobacteria and Actinobacteria were increased by 11.0% and 8.2% with the SMS application, respectively. The carbendazim residues were negatively correlated with the soil pH, electron transfer system activities and relative abundances of Proteobacteria and Actinobacteria. The relative abundances of human disease genes were also dramatically increased with the SMS application, but compared to the SMS alone, extra dicyandiamide application significantly reduced the relative abundances of human disease genes in soils. The SMS applications into fungicide-contaminated soils could generate double-edged sword effects of facilitating fungicide dissipation but leading to potential health risk increase, while applying the dicyandiamide with SMS might be an effective strategy to decrease the negative effect of health risk.

Phylogenetic analysis, computer modeling and catalytic prediction of an Amazonian soil β-glucosidase against a soybean saponin.

Saponins are amphipathic glycosides with detergent properties present in vegetables. These compounds, when ingested, can cause difficulties in absorbing nutrients from food and even induce inflammatory processes in the intestine. There is already some evidence that saponins can be degraded by β-glucosidases of the GH3 family. In the present study, we evaluated, through computational tools, the possibility of a β-glucosidase (AMBGL17) obtained from a metagenomic analysis of the Amazonian soil, to catalytically interact with a saponin present in soybean. For this, the amino acid sequence of AMBGL17 was used in a phylogenetic analysis to estimate its origin and to determine its three-dimensional structure. The 3D structure of the enzyme was used in a molecular docking analysis to evaluate its interaction with soy saponin as a ligand. The results of the phylogenetic analysis showed that AMBGL17 comes from a microorganism of the phylum Chloroflexi, probably related to species of the order Aggregatinales. Molecular docking showed that soybean saponin can interact with the catalytic site of AMBGL17, with the amino acid GLY345 being important in this catalytic interaction, especially with a β-1,2 glycosidic bond present in the carbohydrate portion of saponin. In conclusion, AMBGL17 is an enzyme with interesting biotechnological potential in terms of mitigating the anti-nutritional and pro-inflammatory effects of saponins present in vegetables used for human and animal food.