The computational linguistics community has developed tools, called wikifiers, to identify links to Wikipedia articles from free-form text. Software engineering research can leverage wikifiers to add semantic information to software artifacts. However, no empirically-grounded basis exists to choose an effective wikifier and to configure it for the software domain, on which wikifiers were not specifically trained. We conducted a study to guide the selection of a wikifier and its configuration for applications in the software domain, and to measure what performance can be expected of wikifiers. We applied six wikifiers, with multiple configurations, to a sample of 500 Stack Overflow posts. We manually annotated the 41 124 articles identified by the wikifiers as correct or not to compare their precision and recall. Each wikifier, in turn, achieved the highest precision, between 13% and 82%, for different thresholds of recall, from 60% to 5%. However, filtering the wikifiers’ output with a whitelist can considerably improve the precision above 79% for recall up to 30%, and above 47% for recall up to 60%. Results reported in each wikifier’s original article cannot be generalized to software-specific documents. Given that no wikifier performs universally better than all others, we provide empirically grounded insights to select a wikifier for different scenarios, and suggest ways to further improve their performance for the software domain.