This work is aimed to synthesize Hydroxyapatite (Hap) and Keratin/Hydroxyapatite (KerHap) nanocomposites by coprecipitation using the simultaneous microwave/ultrasound (Mw/Us) method to confer specific textural and morphological properties to the materials using keratin (Ker) extracted from human hair. Four materials were synthesized applying different powers of Mw/Us irradiation: Hap (1100 W Mw, 40 kHz Us), KerHap A (700 W Mw, 40 kHz Us), KerHap B (900 W Mw, 40 kHz Us) and KerHap C (1100 W Mw, 40 kHz Us) at 120 °C for 10 min. The materials were characterized according to their structure (FTIR, XRD, Raman spectroscopy), morphology and size (TEM), and thermal properties (TG). Their cytotoxic effects were studied at different concentrations (25, 50, 100, 200, and 400 μg/mL) using the fibroblast cell line (NIH/3T3) by MTT assay at 24, 48, and 72 h. The Ker extract exhibited a major molecular weight band between 11–10 kDa in SDS-PAGE (Sodium dodecyl sulfate-polyacrylamide gel electrophoresis). Morphology, particle, and crystallite sizes were dependent on the Mw irradiation power applied and keratin added during the synthesis. The MTT assay at 48 h demonstrated a significant increase in cell viability of 39% for Hap at 50 µg/mL, for KerHap A did not show a significant difference, while KerHap B-C showed a significant increase at 200 µg/mL of 30% in cell viability. It means that fibroblast presented better cell adhesion on Hap than on KerHap A-C composites; it may be due to keratin blocking Hap pores because of electrostatic interactions between keratin and Hap.