Small Felids Research Articles

Assessing the Effect of Predator Control on Black‐Footed Cat Survival in Central South Africa

ABSTRACTThe black‐footed cat, a small felid endemic to southern Africa, is particularly vulnerable to killing by larger carnivores while also being prone to developing renal diseases. Here, we investigated the effect of predator control on black‐footed cat populations by comparing adult annual survival between two sites, a nature reserve with little predator management and a sheep and game farm where jackals and caracals were lethally controlled. Although relatively low, survival rates were similar for both sites, suggesting that intraguild killing did not have an additive effect on black‐footed cat mortality. Disease was however prevalent and weakened individuals might have a reduced ability to evade predators.

Cranium of Sipalocyon externus (Metatheria, Sparassodonta) with remarks on the paleoneurology of hathliacynids and insights into the Early Miocene sparassodonts of Patagonia, Argentina

In this contribution, we investigate two sparassodonts from the Sarmiento Formation (Colhuehuapian Age; Early Miocene) recovered at the Patagonian locality of Sacanana, Chubut Province, Argentina. The first specimen (MACN-Pv CH1911), identified as Sipalocyon externus, is an almost complete cranium with upper dentition. The second specimen (MACN-Pv CH40), referred to Borhyaena macrodonta, consists of a fragmentary rostral portion of the face with associated m3–m4. The cranium of S. externus was studied through µCT-scanning to investigate its internal anatomy and infer paleoecological aspects of olfaction and hearing. In general, the endocranial anatomy and encephalization quotient are like those of other metatherians. We report the presence of an accessory transverse diploic sinus that has not previously been described in marsupials. Elements of the nasal cavity (e.g., turbinals, ossified nasal septum, cribriform plate) of S. externus exhibit features that are widespread among marsupials. Sense of olfaction, as evaluated from the cribriform plate and the 3D models of the olfactory bulbs, appears to have grossly resembled that of the domestic cat, a well-researched therian proxy. The dimensions of the tympanic membrane, as estimated from the preserved ectotympanic, suggest that the optimal hearing frequency of S. externus would have been similar to that of extant carnivorous marsupials. In sum, our study suggests that S. externus was a typical small-bodied (2–3 kg) hypercarnivorous metatherian that primarily relied on vision to hunt its prey, complemented by other sensory capabilities (olfaction and hearing), in a similar manner to small felids.

Differentially biased sampling strategies reveal the non-stationarity of species distribution models for Indian small felids

Species Distribution Models (SDMs) have been used extensively to understand species-habitat relationships and design conservation strategies. The ability to train these models using a wide variety of datasets and modelling algorithms has led to their wide applicability across systems. However, the ease of modelling also leads to their use as off-the-shelf models without a detailed investigation of the data and their suitable end-use application. The effect of various modelling parameters on inferences has been explored, however, their interaction with training data type is limited. We used country-wide data for four sympatric Indian small cat species to understand the sensitivity of SDMs to data types, sampling extents and their interaction. Our results reveal the non-stationarity of models with varying modelling parameters. The extent of the training dataset had major implications on the inferences and interacted strongly with the type of dataset used. The divergent distribution of the target species revealed that the effect of sampling extent was more pronounced for species that have limited distribution within the predictive extent. Lastly, our results highlight the significance of sampled environmental space in explaining the non-stationarity of the model outputs.

Review of small cat ecology and status within India

Abstract Small felids play pivotal roles in India's ecosystems, regulating prey populations, facilitating nutrient transfer, and safeguarding critical habitats. Despite their ecological significance, these species receive inadequate conservation attention, contrasting sharply with the focus on larger carnivores. Our review assesses the conservation status of nine native Indian small felids, aiming to consolidate data for improved species conservation and to draw connections with global small carnivore conservation efforts. Over the last 50 years, data scarcity has impeded comprehensive understanding, hindering the assessment of crucial ecological dynamics. We delve into the factors influencing the distribution and abundance of small cats across India, identifying climate, human disturbances, the presence of large carnivores, topography, and vegetation cover as influential determinants. Notably, trade records reveal a decline in small wild felid trade since 1997, suggesting potentially positive outcomes from enhanced law‐enforcement measures. Highlighting the necessity of robust ecological data, particularly pertaining to demographic parameters, prey–predator relationships, and responses to human‐induced habitat alterations, we advocate for integrating these insights into conservation strategies. We stress the urgency of collaborative efforts supported by unwavering political commitment and sustained financial backing to ensure the successful conservation of small felids globally. This review underscores the imperative of filling knowledge gaps, integrating ecological findings into conservation frameworks, and fostering international collaborations to preserve the crucial ecological roles of small felids in terrestrial ecosystems worldwide.

Small Felids Coexist in Mixed-Use Landscape in the Bolivian Amazon.

In the face of global species loss, it is paramount to understand the effects of human activity on vulnerable species, particularly in highly diverse, complex systems. The Greater Madidi Landscape in the Bolivian Amazon includes several biodiverse protected areas that were created with the goal of sustaining healthy and diverse ecosystems while not impeding the livelihoods of local indigenous peoples. In this study, we sought to use camera trap data and single-species occupancy analysis to assess the impacts of different forms of human activity on four species of small felids: ocelots (Leopardus pardalis), margays (Leopardus wiedii), jaguarundi (Herpailurus yagouaroundi), and oncilla (Leopardus tigrinus). We modeled both human variables (proximity to indigenous communities, roads, and tourist camps) and non-human variables (terrain ruggedness, proximity to rivers, canopy height, prey availability, and large cat abundance). Margay occupancy was unaffected by any of these human variables and ocelots showed only weak evidence of being affected by tourism. Ocelots were particularly pervasive throughout the study area and were consistently estimated to have high occupancy probability. We did not obtain sufficient data on jaguarundi or oncilla to reliably model these effects. Our results indicate that small cats successfully coexist both with each other and with the surrounding human activity in this unique landscape, which serves as a model for global protected area management.

The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids.

Habitat degradation and loss of genetic diversity are common threats faced by almost all of today's wild cats. Big cats, such as tigers and lions, are of great concern and have received considerable conservation attention through policies and international actions. However, knowledge of and conservation actions for small wild cats are lagging considerably behind. The black-footed cat, Felis nigripes, one of the smallest felid species, is experiencing increasing threats with a rapid reduction in population size. However, there is a lack of genetic information to assist in developing effective conservation actions. A de novo assembly of a high-quality chromosome-level reference genome of the black-footed cat was made, and comparative genomics and population genomics analyses were carried out. These analyses revealed that the most significant genetic changes in the evolution of the black-footed cat are the rapid evolution of sensory and metabolic-related genes, reflecting genetic adaptations to its characteristic nocturnal hunting and a high metabolic rate. Genomes of the black-footed cat exhibit a high level of inbreeding, especially for signals of recent inbreeding events, which suggest that they may have experienced severe genetic isolation caused by habitat fragmentation. More importantly, inbreeding associated with two deleterious mutated genes may exacerbate the risk of amyloidosis, the dominant disease that causes mortality of about 70% of captive individuals. Our research provides comprehensive documentation of the evolutionary history of the black-footed cat and suggests that there is an urgent need to investigate genomic variations of small felids worldwide to support effective conservation actions.

Extensive Phylogenomic Discordance and the Complex Evolutionary History of the Neotropical Cat Genus Leopardus.

Even in the genomics era, the phylogeny of Neotropical small felids comprised in the genus Leopardus remains contentious. We used whole-genome resequencing data to construct a time-calibrated consensus phylogeny of this group, quantify phylogenomic discordance, test for interspecies introgression, and assess patterns of genetic diversity and demographic history. We infer that the Leopardus radiation started in the Early Pliocene as an initial speciation burst, followed by another in its subgenus Oncifelis during the Early Pleistocene. Our findings challenge the long-held notion that ocelot (Leopardus pardalis) and margay (L. wiedii) are sister species and instead indicate that margay is most closely related to the enigmatic Andean cat (L. jacobita), whose whole-genome data are reported here for the first time. In addition, we found that the newly sampled Andean tiger cat (L. tigrinus pardinoides) population from Colombia associates closely with Central American tiger cats (L. tigrinus oncilla). Genealogical discordance was largely attributable to incomplete lineage sorting, yet was augmented by strong gene flow between ocelot and the ancestral branch of Oncifelis, as well as between Geoffroy's cat (L. geoffroyi) and southern tiger cat (L. guttulus). Contrasting demographic trajectories have led to disparate levels of current genomic diversity, with a nearly tenfold difference in heterozygosity between Andean cat and ocelot, spanning the entire range of variability found in extant felids. Our analyses improved our understanding of the speciation history and diversity patterns in this felid radiation, and highlight the benefits to phylogenomic inference of embracing the many heterogeneous signals scattered across the genome.

Effects of snow leopards (Panthera uncia) on olfactory communication of Pallas’s cats (Otocolobus manul) in the Altai Mountains, Mongolia

Abstract Olfactory communication is important for many solitary carnivores to delineate territories and communicate with potential mates and competitors. Pallas’s cats (Otocolobus manul) are small felids with little published research on their ecology and behaviour, including if they avoid or change behaviours due to dominant carnivores. We studied their olfactory communication and visitation at scent-marking sites using camera traps in two study areas in Mongolia. We documented four types of olfactory communication behaviours, and olfaction (sniffing) was the most frequent. Pallas’s cats used olfactory communication most frequently at sites that were not visited by snow leopards (Panthera uncia) and when they used communal scent-marking sites, they were more likely to use olfactory communication when a longer time had elapsed since the last visit by a snow leopard. This suggests that Pallas’s cats may reduce advertising their presence in response to occurrence of snow leopards, possibly to limit predation risk.

Mid-sized felids threatened by habitat degradation in Southeast Asia

Deforestation and poaching in Southeast Asia have driven a stark decline in the region's apex predators, including large felids like tigers and leopards. Meanwhile, some small felids thrive in the region's human-modified landscapes. The extent to which medium-sized felids cope with anthropogenic disturbances remains poorly understood, but this information is crucial for the conservation of threatened felids and key trophic interactions that maintain high-diversity food webs. Here, we use the largest camera-trap dataset from Southeast Asia to conduct a multi-scale synthesis of the habitat associations of two cryptic felids, the Near-Threatened Asiatic golden cat (Catopuma temminckii) and the Endangered bay cat (Catopuma badia). Unlike many mesopredators, both species exhibited poor tolerance to habitat degradation (i.e. selective logging, edges or fragmentation). The golden cat was positively associated with forest patch size and elevation, and negatively associated with degraded forests, and the bay cat was negatively associated with human population density. Our habitat suitability model suggests that ongoing forest fragmentation and degradation have critically reduced suitable habitat for the golden cat, giving reason to suspect a population decline that calls for a revision of the species' IUCN Red List status to Vulnerable. There is also evidence that the bay cat may be more widely distributed in Borneo than previously thought, including in areas currently threatened by deforestation. Our results indicate both species face a high risk of becoming extirpated from many of the region's remaining forests. In areas where apex predators have been extirpated, these charismatic mid-sized felids can become umbrella species to protect forests with high biodiversity value.

Interspecific patterns of small cats in an intraguild-killer free area of the threatened Caatinga drylands, Brazil.

The semi-arid Caatinga is the largest dry forest ecoregion in the Americas; nevertheless, it is experiencing alarming rates of habitat loss. Most vegetation fragments in the biome are either unprotected or within private lands; however, these private areas are susceptible to anthropogenic activity, and often have the presence of non-native wildlife such as domestic dogs and cats. Two small felid species, the northern tiger cat and the jaguarundi co-occur throughout the Caatinga and have overlapping niches, which require segregation mechanisms to avoid interference competition. Assessing these species strategies for coexistence is crucial, as it can guide conservation actions. With this aim, a private ranch in the Brazilian Caatinga drylands was surveyed and multi-species occupancy models were used to assess co-occurrence patterns between northern tiger cats and jaguarundis. The degree of temporal overlap between both felids and domestic dogs and cats were also assessed. Evidence was found of positive co-occurrence between tiger cats and jaguarundis, suggesting a lack of spatial segregation at our study site; and low temporal overlap was found between both felids, with tiger cats being nocturnal and jaguarundis diurnal. High temporal overlap was found though between domestic dogs and both wild felid species. Our results suggest that small felids can coexist in private areas of the Caatinga with sufficient habitat. However, there is a need to highlight the potential threat of disease transmission by non-native carnivores as something that should be addressed in these private landscapes.

Chromosome-level, nanopore-only genome and allele-specific DNA methylation of Pallas's cat, Otocolobus manul.

Pallas's cat, or the manul cat (Otocolobus manul), is a small felid native to the grasslands and steppes of central Asia. Population strongholds in Mongolia and China face growing challenges from climate change, habitat fragmentation, poaching, and other sources. These threats, combined with O. manul's zoo collection popularity and value in evolutionary biology, necessitate improvement of species genomic resources. We used standalone nanopore sequencing to assemble a 2.5 Gb, 61-contig nuclear assembly and 17097 bp mitogenome for O. manul. The primary nuclear assembly had 56× sequencing coverage, a contig N50 of 118 Mb, and a 94.7% BUSCO completeness score for Carnivora-specific genes. High genome collinearity within Felidae permitted alignment-based scaffolding onto the fishing cat (Prionailurus viverrinus) reference genome. Manul contigs spanned all 19 felid chromosomes with an inferred total gap length of less than 400 kilobases. Modified basecalling and variant phasing produced an alternate pseudohaplotype assembly and allele-specific DNA methylation calls; 61 differentially methylated regions were identified between haplotypes. Nearest features included classical imprinted genes, non-coding RNAs, and putative novel imprinted loci. The assembled mitogenome successfully resolved existing discordance between Felinae nuclear and mtDNA phylogenies. All assembly drafts were generated from 158 Gb of sequence using seven minION flow cells.

The effects of the addition of two environmental enrichments on the behavior and fecal cortisol levels of three small felids species (Caracal caracal, Leptailurus serval, Leopardus pardalis) in captivity

The effects of the addition of two environmental enrichments on the behavior and fecal cortisol levels of three small felids species (Caracal caracal, Leptailurus serval, Leopardus pardalis) in captivity

Escondido en los pajonales: registros fotográficos y variación fenotípica de Leopardus pajeros en la Patagonia chilena

Hidden in the southern Pampas: Photographic records and phenotypic variation of Leopardus pajeros The Southern pampas cat (Leopardus pajeros) is a small felid whose range is restricted to Argentina and southern Chile. There is very little specific literature and its natural history remains an enigma. In the present note, we report four records of the Southern pampas cat in Patagonia and provide photographs and detailed descriptions, from which we propose a phenotypic spectrum ranging from light gray, to brownish gray, to rusty red.

Traditional livestock activities modify the spatial behavior of small wildcats in the high Andes

Human activities lead to declines in species’ abundance and diversity, as well as loss of habitat quality from overexploitation. The effects of livestock grazing increase on small felids are poorly understood, primarily due to the low detectability of these species. The grazing of domestic camelids, such as the llama (Lama glama) and the alpaca (Vicugna pacos), is the main traditional source of income for the inhabitants of the Andes, where the Andean cat (Leopardus jacobita) and Pampas cat (L. colocolo) are also present. In this study, we employ camera trap data to evaluate the association of llama and alpaca grazing with occupancy by the Andean and Pampas cat in Sajama National Park. In each of 36 sampling stations, we installed a camera trap, a grid of traps for rodents and two habitat transects along a gradient of intensity of livestock grazing. Occupancy models showed that negative effect of camelid abundance was stronger for the Andean cat than the Pampas cat. For both species, occupancy was also associated positively to the abundance of prey, proximity to water bodies, and vegetation. Given that livestock activity is a way of life for human populations in the Andes, we suggest that mechanisms should be implemented to compensate for the negative effects of livestock on Andean and Pampas cat populations.

Spatio-temporal patterns of the European wildcat in a Mediterranean coastal area

Like most small felids, the European wildcat Felis silvestris is a rather elusive species, poorly detectable in the wild, due to several aspects of its biology. Camera trapping can represent a suitable tool to understand temporal activity patterns and habitat preferences of such elusive species. We used intensive camera trapping over two full years to investigate spatio-temporal patterns of the wildcat in a Mediterranean coastal protected area (Maremma Regional Park, central Italy). At the seasonal scale, the wildcat showed a marked twilight activity in summer and winter (mating period), and nocturnal activity in autumn. Conversely, a peak of activity during the day, i.e., in broad daylight, was reported in spring. Reproductive females may limit their nocturnal movements in spring to increase protection from predators to their kittens at the den, although further data are required to support this conclusion. At seasonal, semestral, and yearly temporal scales, the frequency of wildcat detections increased along with availability of shrubwood. These results emphasise the importance for this small felid of areas with dense vegetation cover (Mediterranean maquis and shrubwood, in our study area). Areas densely covered with shrubby vegetation are expected to provide benefits to this elusive small cat in terms of reduced human disturbance (included tourists), availability of prey (e.g., small mammals), as well as shelter, essential to ensure protection towards potential larger predators.

Effect of free-ranging cattle on mammalian diversity: an Austral Yungas case study

AbstractExtensive cattle ranging is an important economic activity in mountains, with diverse effects on native mammal communities. The effects of cattle Bos taurus can be negative, positive or neutral, mostly depending on the stocking rate. We examined the effect of cattle on the diversity and abundance of native mammalian species in the Austral Yungas region of Argentina, considering environmental variables, land protection status, and human influence. Using 12,512 trap-nights from 167 camera-trap stations over 11 years (2009–2019), we calculated a relative abundance index using camera events and used generalized linear models to estimate the effect of cattle on small mammals, large herbivores, species of conservation concern and felids. Cattle had different effects on each group of native mammals. We observed a lower abundance of large native herbivores and the absence of small mammals in areas with high cattle abundance. The tapir Tapirus terrestris, jaguar Panthera onca and white-lipped peccary Tayassu pecari are rare in the Yungas and therefore potentially vulnerable to extinction there. Conservation of small felids and low cattle abundance could be compatible, but felids are threatened by other anthropogenic influences. Native mammalian diversity and richness were related to land protection status. The entire ecoregion is potentially suitable for cattle, suggesting the potential for further threats, and that cattle should be excluded from strictly protected areas. To ensure extensive cattle ranging is compatible with wildlife conservation in areas where exclusion is not possible, we recommend improved management of cattle and moderate stocking rates.

A POSSIBLESMILODON(MAMMALIA, FELIDAE) COPROLITE FROM THE PLEISTOCENE OF ARGENTINA

ABSTRACTPleistocene large carnivores from the Pampean Region have been studied almost always based on bone remains. Here we report the first coprolite of a large carnivore from the Late Pleistocene of the Pampean Region, Argentina. The coprolite was found associated with megafauna bone remains and it shows the typical shape and size of a carnivorous mammal, with a length of 240 mm and a maximum diameter of 39.59 mm. The coprolite contains two bones of the autopodium of an artiodactyl, and numerous dermal ossicles of giant terrestrial sloths. The coprolite's composition, size, and shape allow us to discard ursids, canids, and small felids. Ursid and canid feces contain abundant plant remains, which are absent in the coprolite described here. Feces of extant felids are smaller than the coprolite here as they do not exceed 130 mm in length and 30 mm in diameter. Based on size, shape, and bone inclusions, the discovered coprolite may be attributed to the Machairodontinae saber-toothed felid Smilodon. If correctly identified, this coprolite sheds light on predatory habits of Smilodon.

Live capture and handling of Taiwanese leopard cats Prionailurus bengalensis: an evaluation of trap designs and capture protocol

Behavioural and ecological studies often require capture and handling of animals for marking or collaring. Cage traps, in various designs, are commonly used for live‐capture of small mammals. Apart from costs and practicality, trap designs need to balance trap success and safety for the trapped animal. Inevitably, trapping and handling causes stress for the animals involved and can even result in injury or mortality. To optimise trap methods, it is important to share experiences. In this study, we describe our trapping and handling protocol for leopard cat, an elusive small felid which can be challenging to trap. We determine which factors influence trap success and compare three custom made cage trap designs: aviary‐, box‐ and side‐traps. We found that trap chance was affected by trap design, location and seasonality but, despite being causes of leopard cat mortality, not by human or domestic dog presence. The side‐trap provided the best tradeoff between trap success and safety, and was economic and easy to handle. Sacrificing live‐bait was unnecessary to successfully trap leopard cats. More male than female leopard cats visited the traps, resulting in a sex‐bias in trapped individuals. Due to a long response time, especially when continuous trap monitoring was absent, the time between leopard cat capture and release was > 10 h (mean ± SE = 16:18 ± 01:57 h). We therefore recommend to always use remote continuous monitoring devices when trapping animals. Although not related to drug dosage, recovery time was negatively related to the distance leopard cats moved after release, whereas total time between capture and release was not. To minimize exposure to human and domestic dog related threats, we released leopard cats after nightfall within their natural 18:00–06:00 h activity time, and only released individuals once fully responsive, which took > 4 h.

Status and distribution of jaguarundi in Texas and Northeastern México: Making the case for extirpation and initiation of recovery in the United States.

The jaguarundi (Puma yagouaroundi) is a small felid with a historical range from central Argentina through southern Texas. Information on the current distribution of this reclusive species is needed to inform recovery strategies in the United States where its last record was in 1986 in Texas. From 2003 to 2021, we conducted camera‐trap surveys across southern Texas and northern Tamaulipas, México to survey for medium‐sized wild cats (i.e., ocelots [Leopardus pardalis], bobcats [Lynx rufus], and jaguarundi). After 350,366 trap nights at 685 camera sites, we did not detect jaguarundis at 16 properties or along 2 highways (1050 km2) in Texas. However, we recorded 126 jaguarundi photographic detections in 15,784 trap nights on 2 properties (125.3 km2) in the northern Sierra of Tamaulipas, Tamaulipas, México. On these properties, latency to detection was 72 trap nights, with a 0.05 probability of detection per day and 0.73 photographic event rate every 100 trap nights. Due to a lack of confirmed class I sightings (e.g., specimen, photograph) in the 18 years of this study, and no other class I observations since 1986 in the United States, we conclude that the jaguarundi is likely extirpated from the United States. Based on survey effort and results from México, we would have expected to detect jaguarundis over the course of the study if still extant in Texas. We recommend that state and federal agencies consider jaguarundis as extirpated from the United States and initiate recovery actions as mandated in the federal jaguarundi recovery plan. These recovery actions include identification of suitable habitat in Texas, identification of robust populations in México, and re‐introduction of the jaguarundi to Texas.

Mechanisms of coexistence in a diverse Neotropical mammalian carnivore community

Abstract Mammalian carnivore diversity within the Reserva Natural del Bosque Mbaracayú in eastern Paraguay is represented by five families (Canidae, Mephitidae, Mustelidae, Procyonidae, and Felidae) and includes large-bodied, apex predators, several omnivores, and numerous mesocarnivores. The competitive exclusion principle argues that sustained spatial and temporal coexistence of two or more species with identical ecological requirements is unsustainable. The Reserve is a mosaic of habitats that has become isolated due to extensive deforestation of the surrounding Upper Paraná Atlantic Forest. Nevertheless, it is remarkable in that 16 mammalian carnivore species are documented as coexisting within the Reserve. We sought to determine the extent to which this diverse community is mitigating competition through the partitioning of available niche space by assessing dietary ecology of mammalian carnivores present, including diet breadths and dietary overlap, and by examining spatial patterns within the reserve. Feces were collected from all 16 mammalian carnivore species from seven areas within the reserve and specific identifications were confirmed by molecular analyses. Diet breadth, B^, standardized diet breadth, B^A, and Pianka’s Index for dietary overlap, O^, were calculated. A Chi-square goodness-of-fit test was performed to test for randomness of samples associated with survey areas. Diet analyses indicated a spectrum from dietary generalists to specialists. Species segregated into six dietary guilds, defined as groups of species with O^ > 0.5. Four guilds included only one species each (Neotropical otter, crab-eating fox, jaguar, and puma). The low dietary overlap between jaguar and puma contrasts with studies conducted elsewhere. One guild consisted of four highly omnivorous species (maned wolf, Molina’s hog-nosed skunk, crab-eating raccoon, and South American coati). The sixth guild included eight species which mostly consumed small vertebrates, primarily mammals as well as birds and reptiles (bush dog, two mustelines, five small felids). The mustelines (tayra and lesser grison) had extremely high dietary overlap. Although they did not segregate spatially, they are known to occupy distinct niches in vertically stratified forests. The five small felids also showed extremely high dietary overlap. Three of them were found to segregate spatially within the Reserve and two did not, although one (jaguarundi) is known to segregate temporally, being more active diurnally. The exceptionally rich community of mammalian carnivore species at the Reserva Natural del Bosque Mbaracayú appeared to avoid unsustainable competition by a variety of mechanisms, some utilizing different food items, or, in the case of high dietary overlap, utilizing spatial or temporal resources differently.