Context. High-resolution solar observations have revealed the existence of small-scale vortices, as seen in chromospheric intensity maps and velocity diagnostics. Frequently, these vortices have been observed near magnetic flux concentrations, indicating a link between swirls and the evolution of the small-scale magnetic fields. Vortices have also been studied with magneto-hydrodynamic (MHD) numerical simulations of the solar atmosphere, revealing their complexity, dynamics, and magnetic nature. In particular, it has been proposed that a rotating magnetic field structure driven by a photospheric vortex flow at its footprint produces the chromospheric swirling plasma motion. Aims. We present a complete and comprehensive description of the time evolution of a small-scale magnetic flux concentration interacting with the intergranular vortex flow and affected by processes of intensification and weakening of its magnetic field. In addition, we study the chromospheric dynamics associated with the interaction, including the analysis of a chromospheric swirl and an impulsive chromospheric jet. Methods. We studied observations taken with the CRisp Imaging SpectroPolarimeter (CRISP) instrument and the CHROMospheric Imaging Spectrometer (CHROMIS) at the Swedish Solar Telescope (SST) in April 2019. The data were recorded at quiet-Sun disc centre, consisting of full Stokes maps in the Fe I line at 6173 Å and in the Ca II infrared triplet line at 8542 Å, as well as spectroscopic maps in the lines of Hα 6563 Å and Ca II K 3934 Å. Utilising the multi-wavelength data and performing height-dependent Stokes inversion, based on methods of local correlation tracking and wavelet analysis, we studied several atmospheric properties during the event lifetime. This approach allowed us to interpret the spatial and temporal connectivity between the photosphere and the chromosphere. Results. We identified the convective collapse process as the initial mechanism of magnetic field intensification, generating a re-bound flow moving upwards within the magnetic flux concentration. This disturbance eventually steepens into an acoustic shock wave that dissipates in the lower chromosphere, heating it locally. We observed prolonged magnetic field amplification when the vortex flow disappears during the propagation of the upward velocity disturbance. We propose that this type of magnetic field amplification could be attributed to changes in the local vorticity. Our analysis indicates the rotation of a magnetic structure that extends from the photosphere to the chromosphere, anchored to a photospheric magnetic flux concentration. It appears to be affected by a propagating shock wave and its subsequent dissipation process could be related to the release of the jet.