The agility of the spacecraft which refers to the spacecraft's ability to execute fast and accurate manoeuvers within a fixed period of time, is a key satellite parameter. The spacecraft' s agility is directly proportional to the spacecraft actuators' output torque. For high torque inertial actuators (>0.5Nm), Control Moment Gyroscope (CMG) exhibits better performances in terms of mass and electrical power consumption than reaction wheels. However, in addition to the complex steering law required to avoid CMG singularities, one of the reasons why CMGs are not widely used is also due to their high micro-vibration emission which may interfere and disrupt the spacecraft' s sensitive instruments such as optical payloads. In this paper, an innovative two-stage viscoelastic isolation system has been designed and implemented in a new low micro-vibration CMG prototype. The first stage of the damping system acts at bearing level to attenuate the possible shock vibrations while the second stage acts at mechanism level to attenuate the structural resonances and motor noise. The developed CMG enables to combine high actuator output torque with a low micro-vibration signature. The viscoelastic damping system is cost effective as it is a fully passive system which requires no thermal control and no electronics. Furthermore, the attenuation provided by this innovative two stage damping system can reach a slope up to −80dB/dec which leads to a Mini-CMG micro-vibration signature lower than similar output torque reaction wheels not equipped with a damping system.