This study seeks to estimate the potential hydrogen production from the remaining energy in the small hydropower plants (SHPs). SHPs are plants with a reservoir of three-square miles and an installed capacity between 1 and 30 MW and wind plants in the south of Brazil. Subsequently, to evaluate the generation of chemical and electrical energy and the amount of stored hydrogen and to determine possible applications in the transport sector and its injection into the natural gas network of the regional mesh. Moreover, scenarios 1 and 2 represented 5% and 3% of the surplus power for hydrogen production. The results indicated that green hydrogen production from the remaining energy in the small hydroelectric and wind power plants proved viable. There was an average potential of 5.95 MNm3/day in SHPs and 7.66 MNm3/day in wind farms. Furthermore, the wind farms could generate an average of 16,000 MWh/day through H2 production, while the SHPs have the potential to produce an average of 9340 MWh/day. Further, the proposed scenarios were economically viable since the profit estimated ranged from 27.13 to 617.92 U$/kg in wind farms and from 162.87 to 342.42 U$/kg in SHPs.