Small Fraction Research Articles

Crystal scatter effects in a large-area dual-panel Positron Emission Mammography system.

Positron Emission Mammography (PEM) is a valuable molecular imaging technique for breast studies using pharmaceuticals labeled with positron emitters and dual-panel detectors. PEM scanners normally use large scintillation crystals coupled to sensitive photodetectors. Multiple interactions of the 511 keV annihilation photons in the crystals can result in event mispositioning leading to a negative impact in radiopharmaceutical uptake quantification. In this work, we report the study of crystal scatter effects of a large-area dual-panel PEM system designed with either monolithic or pixelated lutetium yttrium orthosilicate (LYSO) crystals using the Monte Carlo simulation platform GATE. The results show that only a relatively small fraction of coincidences (~20%) arise from events where both coincidence photons undergo single interactions (mostly through photoelectric absorption) in the crystals. Most of the coincidences are events where at least one of the annihilation photons undergoes a chain of Compton scatterings: approximately 79% end up in photoelectric absorption while the rest (<1%) escape the detector. Mean positioning errors, calculated as the distance between first hit and energy weighted (assigned) positions of interaction, were 1.70 mm and 1.92 mm for the monolithic and pixelated crystals, respectively. Reconstructed spatial resolution quantification with a miniDerenzo phantom and a list mode iterative reconstruction algorithm shows that, for both crystal types, 2 mm diameter hot rods were resolved, indicating a relatively small effect in spatial resolution. A drastic reduction in peak-to-valley ratios for the same hot-rod diameters was observed, up to a factor of 14 for the monolithic crystals and 7.5 for the pixelated ones.

On the Existence, Rareness, and Uniqueness of Quenched H i-rich Galaxies in the Local Universe

Using data from ALFALFA, xGASS, H i-MaNGA, and the Sloan Digital Sky Survey (SDSS), we identify a sample of 47 “red but H i-rich” (RR) galaxies with near-UV (NUV) − r > 5 and unusually high H i-to-stellar mass ratios. We compare the optical properties and local environments between the RR galaxies and a control sample of “red and H i-normal” (RN) galaxies that are matched in stellar mass and color. The two samples are similar in the optical properties typical of massive red (quenched) galaxies in the local Universe. The RR sample tends to be associated with slightly lower-density environments and has lower clustering amplitudes and smaller neighbor counts at scales from several hundred kiloparsecs to a few megaparsecs. The results are consistent with the RR galaxies being preferentially located at the center of low-mass halos, with a median halo mass ∼1012 h −1 M ⊙ compared to ∼1012.5 h −1 M ⊙ for the RN sample. This result is confirmed by the SDSS group catalog, which reveals a central fraction of 89% for the RR sample, compared to ∼60% for the RN sample. If assumed to follow the H i size–mass relation of normal galaxies, the RR galaxies have an average H i-to-optical radius ratio of R HI/R 90 ∼ 4, four times the average ratio for the RN sample. We compare our RR sample with similar samples in previous studies, and quantify the population of RR galaxies using the SDSS complete sample. We conclude that the RR galaxies form a unique but rare population, accounting for only a small fraction of the massive quiescent galaxy population. We discuss the formation scenarios of the RR galaxies.

Comparison of mutation landscapes of pretreatment versus recurrent squamous cell carcinoma of the oral cavity: The possible mechanism of resistance to standard treatment.

A high recurrent rate of oral squamous cell carcinoma (OSCC) is a major concern in head and neck cancer treatment. The study of the genetic mutation landscape in recurrent OSCC may provide information on certain mutations associated with the pathobiology and treatment response of the OSCC. We investigated the mutation landscape of matched pretreatment and recurrent tumors to understand the influence of genetic mutations on the pathobiology and clinical outcomes in OSCC. We sequenced 33 formalin-fixed paraffin-embedded (FFPE) recurrent tumors, primary tumors, and primary tumors before recurrence that matched the recurrent tumors collected from Rajavithi Hospital during 2019-2021. We identified recurrent mutations from these samples by the Oncomine Ion Torrent-based next-generation sequencing on the 517 cancer-associated gene panel. From the results, we found that the most commonly mutated gene in the cohort is a histone methyltransferase KMT2D (54.55%), implicating that aberrance in epigenetic regulation may play a role in oral cancer tumorigenesis. Functional protein association network analysis of the gene frequently mutated in the recurrent tumors showed enrichment of genes that regulate the cancer cell cycle, that is, MRE11A, CDKN2A, and CYLD. This finding was confirmed in the primary-recurring matched pair. We found that recurrent tumors possess a small but recurring group of genes, with presumably the subclonal mutations driving the recurrence of the tumor, suggesting that the recurrent disease originated from a small fraction of the cancer cell that survives standard treatment. These genes were absent in the primary tumor with a good response to the standard treatment. On the other hand, we found an enrichment of DNA repair genes, namely ATR, BRCA1, BRCA2, RAD50, and MUTYH, in nonrecurrent tumors suggesting that the mutations in the DNA repair pathway may at least partially explain the different response to the standard treatment. Our pilot study identified pathways of carcinogenesis in oral cancer and specific gene sets that indicate treatment responses and prognoses in this group of patients.

Academic Stress and Happiness among Young Adults

This study examines the correlation between academic stress and happiness in college-aged young adults, employing a correlational approach and quantitative methods to assess the impact on emotional well-being. With a sample of 240 predominantly college students from across the country, data were collected through self-report questionnaires, utilizing the reliable and valid Academic Stress Scale and Oxford Happiness Scale. The results reveal a statistically significant but relatively modest positive association between academic stress and happiness. Although happiness proves to be a robust predictor of academic stress, it explains only a small fraction of its variance. The relationship is deemed complex, influenced by various quantitative and qualitative factors. The study underscores the importance of a holistic approach to enhance student well-being and alleviate academic stress, emphasizing the need to address factors beyond happiness, including coping methods and support networks. Future research is encouraged to explore additional contributors to academic stress in young adults. In summary, this study contributes valuable insights into the intricate interplay between academic stress and happiness, enriching our understanding of student well-being and mental health complexities.

Influence of mechanical impurities composition on formation of organic deposits

Relevance. The need to study the effect of solid particles in the oil stream on formation, composition and structure of deposits. Modern models of formation of asphalt-resin-paraffin deposits, based on correlation dependencies or empirical data, do not take into account the influence of the content of solid particles in oil to the proper extent. Recent studies show that various solid particles in oil can affect both the critical velocity and the structure of the formed deposits, but the effect of various particles on the intensity of formation of asphalt-resin-paraffin deposits remains unexplored. Aim. To study the effect of various sand fractions on the intensity of formation, composition and structure of asphalt-resin-paraffin deposits Methods. Modeling of formation of asphalt-resin-paraffin deposits at the laboratory installation “Cold Finger” when adding various sand fractions to oil; studying composition and structure of deposits after the conducted investigations using a microscope. Results. According to the research results, there is a significant increase in the intensity of formation of asphalt-resin-paraffin deposits when large fractions of sand are added to oil at a concentration of 5% or higher. It is worth noting that small fractions have almost no effect on the amount of deposits formed. Also, if various fractions are added to oil in equal proportions, there is almost no effect on the intensity of formation of asphalt-resin-paraffin deposits. When analyzing the deposits images from a microscope, it can be concluded that paraffin molecules, when interacting with sand particles of a dimension greater than 0.05 mm, form homols, and with an increase in the fraction, their structural strength grows. Conclusions. The study of modern models of formation of asphalt-resin-paraffin deposits and current articles made it possible to understand that the issue of studying the factors of formation of asphalt-resin-paraffin deposits, in particular the effect of the presence of solid particles in oil, remains open. The results of this article can be aimed at improving existing technologies in the field of modeling paraffin formation, as well as contribute to the further work of researchers in this direction.

Single-Cell Analysis Reveals a Subset of High IL-12p40-Secreting Dendritic Cells within Mouse Bone Marrow-Derived Macrophages Differentiated with M-CSF.

Macrophages and dendritic cells (DCs), although ontogenetically distinct, have overlapping functions and exhibit substantial cell-to-cell heterogeneity that can complicate their identification and obscure innate immune function. In this study, we report that M-CSF-differentiated murine bone marrow-derived macrophages (BMDMs) exhibit extreme heterogeneity in the production of IL-12, a key proinflammatory cytokine linking innate and adaptive immunity. A microwell secretion assay revealed that a small fraction of BMDMs stimulated with LPS secrete most IL-12p40, and we confirmed that this is due to extremely high expression of Il12b, the gene encoding IL-12p40, in a subset of cells. Using an Il12b-YFP reporter mouse, we isolated cells with high LPS-induced Il12b expression and found that this subset was enriched for genes associated with the DC lineage. Single-cell RNA sequencing data confirmed a DC-like subset that differentiates within BMDM cultures that is transcriptionally distinct but could not be isolated by surface marker expression. Although not readily apparent in the resting state, upon LPS stimulation, this subset exhibited a typical DC-associated activation program that is distinct from LPS-induced stochastic BMDM cell-to-cell heterogeneity. Overall, our findings underscore the difficulty in distinguishing macrophages and DCs even in widely used invitro murine BMDM cultures and could affect the interpretation of some studies that use BMDMs to explore acute inflammatory responses.

SOX17 enables immune evasion of early colorectal adenomas and cancers.

A hallmark of cancer is the avoidance of immune destruction. This process has been primarily investigated in locally advanced or metastatic cancer1-3; however, much less is known about how pre-malignant or early invasive tumours evade immune detection. Here, to understand this process in early colorectal cancers (CRCs), we investigated how naive colon cancer organoids that were engineered in vitro to harbour Apc-null, KrasG12D and Trp53-null (AKP) mutations adapted to the in vivo native colonic environment. Comprehensive transcriptomic and chromatin analyses revealed that the endoderm-specifying transcription factor SOX17 became strongly upregulated in vivo. Notably, whereas SOX17 loss did not affect AKP organoid propagation in vitro, its loss markedly reduced the ability of AKP tumours to persist in vivo. The small fraction of SOX17-null tumours that grew displayed notable interferon-γ (IFNγ)-producing effector-like CD8+ T cell infiltrates in contrast to the immune-suppressive microenvironment in wild-type counterparts. Mechanistically, in both endogenous Apc-null pre-malignant adenomas and transplanted organoid-derived AKP CRCs, SOX17 suppresses the ability of tumour cells to sense and respond to IFNγ, preventing anti-tumour T cell responses. Finally, SOX17 engages a fetal intestinal programme that drives differentiation away from LGR5+ tumour cells to produce immune-evasive LGR5- tumour cells with lower expression of major histocompatibility complex class I(MHC-I). We propose that SOX17 is a transcription factor that is engaged during the early steps of colon cancer to orchestrate an immune-evasive programme that permits CRC initiation and progression.

Management of incidentally detected gallbladder polyps: a review of clinical scenarios using the 2022 SRU gallbladder polyp consensus guidelines.

Gallbladder (GB) polyps are a common incidental finding on sonography, but only a small fraction of polyps become GB cancer. The Society of Radiologists in Ultrasound (SRU) consensus committee recently performed an extensive literature review and published guidelines for GB polyp follow-up/management to provide clarity among the many heterogeneous recommendations that are available to clinicians. As these guidelines have become adopted into clinical practice, challenging clinical scenarios have arisen including GB polyps in primary sclerosing cholangitis (PSC), high risk geographic/genetic patient populations, shrinking polyps, pedunculated vs sessile polyps, thin vs thick stalked polyps, vascular polyps and multiple polyps. According to the SRU guidelines, clinicians should refer to gastroenterology guidelines when managing GB polyps in patients with known PSC. If patients at high geographic/genetic risk develop GB polyps, 'extremely low risk' polyps may be managed as 'low risk' and 10-14mm 'extremely low risk' or '7-14mm' low risk polyps that decrease in size by ≥ 4mm require no follow-up. Thin-stalked or pedunculated polyps are 'extremely low risk' and thick-stalked pedunculated polyps are 'low risk'. Sessile polyps are 'low risk' but should receive immediate specialist referral if features suggestive of GB cancer are present. Neither polyp multiplicity nor vascularity impact risk of GB cancer and follow up should be based on morphology alone.

Efficiently improving the Wi-Fi-based human activity recognition, using auditory features, autoencoders, and fine-tuning

Human activity recognition (HAR) based on Wi-Fi signals has attracted significant attention due to its convenience and the availability of infrastructures and sensors. Channel State Information (CSI) measures how Wi-Fi signals propagate through the environment. However, many scenarios and applications have insufficient training data due to constraints such as cost, time, or resources. This poses a challenge for achieving high accuracy levels with machine learning techniques. In this study, multiple deep learning models for HAR were employed to achieve acceptable accuracy levels with much less training data than other methods. A pretrained encoder trained from a Multi-Input Multi-Output Autoencoder (MIMO AE) on Mel Frequency Cepstral Coefficients (MFCC) from a small subset of data samples was used for feature extraction. Then, fine-tuning was applied by adding the encoder as a fixed layer in the classifier, which was trained on a small fraction of the remaining data. The evaluation results (K-fold cross-validation and K = 5) showed that using only 30% of the training and validation data (equivalent to 24% of the total data), the accuracy was improved by 17.7% compared to the case where the encoder was not used (with an accuracy of 79.3% for the designed classifier, and an accuracy of 90.3% for the classifier with the fixed encoder). While by considering more calculational cost, achieving higher accuracy using the pretrained encoder as a trainable layer is possible (up to 2.4% improvement), this small gap demonstrated the effectiveness and efficiency of the proposed method for HAR using Wi-Fi signals.

Conceptual breakthroughs of the long noncoding RNA functional system and its endogenous regulatory role in the cancerous regime.

Long noncoding RNAs (lncRNAs) derived from noncoding regions in the human genome were once regarded as junks with no biological significance, but recent studies have shown that these molecules are highly functional, prompting an explosion of studies on their biology. However, these recent efforts have only begun to recognize the biological significance of a small fraction (< 1%) of the lncRNAs. The basic concept of these lncRNA functions remains controversial. This controversy arises primarily from conventional biased observations based on limited datasets. Fortunately, emerging big data provides a promising path to circumvent conventional bias to understand an unbiased big picture of lncRNA biology and advance the fundamental principles of lncRNA biology. This review focuses on big data studies that break through the critical concepts of the lncRNA functional system and its endogenous regulatory roles in all cancers. lncRNAs have unique functional systems distinct from proteins, such as transcriptional initiation and regulation, and they abundantly interact with mitochondria and consume less energy. lncRNAs, rather than proteins as traditionally thought, function as the most critical endogenous regulators of all cancers. lncRNAs regulate the cancer regulatory regime by governing the endogenous regulatory network of all cancers. This is accomplished by dominating the regulatory network module and serving as a key hub and top inducer. These critical conceptual breakthroughs lay a blueprint for a comprehensive functional picture of the human genome. They also lay a blueprint for combating human diseases that are regulated by lncRNAs.

Weathering as a control on the triple oxygen isotopes of groundwater-associated ferromanganese deposits: lessons from the Grimlock Ni–Co–Mn prospect, Northern Territory, Australia

At the Grimlock laterite deposit (Northern Territory, Australia), Co and Ni mineralization occurs mainly in the Mn-oxide rich layers of the ferromanganese (Fe-Mn) crust overlying ultramafic bedrock. Groundwater-associated Fe-Mn crusts consist of mineral (e.g. Mn-oxide, Fe-oxyhydroxide and silicate) groups suitable for studying triple oxygen isotopes and present unique interpretative challenges (e.g. small Mn-oxide fractions relative to Fe-Mn precipitates from other formation environments and extensive weathering). We evaluate triple oxygen isotopes within the context of changes to properties (i.e. mineralogy, major and trace element geochemistry, and degree of weathering) of a lateritic profile. We use pre-existing mineral-water fractionation factors, meteoric water δ 18 O and temperature data to calculate δ 18 O values of fully altered mineralogical endmembers, then, using mass balance, discuss scenarios to elucidate measured whole-rock δ 18 O values. The δ ′ 18 O (′ denotes linearized notation) and Δ ′ 17 O of near-surface samples (0–8 m) are generally lower (mean of 8.892‰) and higher (mean of −0.141‰), respectively, than the δ ′ 18 O (mean of 12.767‰) and Δ ′ 17 O (mean of −0.176‰) of samples from greater depths (19–22 m). At 16–17 m depth, δ ′ 18 O and Δ ′ 17 O are relatively high (means of 17.509 and −0.118‰, respectively). The measured whole-rock δ 18 O values are explainable by substituting lower δ ′ 18 O values for the Mn-oxide and Fe-oxyhydroxide fractions, and higher δ ′ 18 O values for the aluminosilicate fraction, changes coinciding with greater alteration. These results suggest that mineral weathering is primarily responsible for observed variations in the triple oxygen isotopes of groundwater-associated Fe-Mn crusts, rather than variation in the initial source of oxygen incorporated into Mn-oxide. Supplementary material: Grimlock sample photographs, XRD patterns and supplementary figures and tables are available at https://doi.org/10.6084/m9.figshare.c.7071907

Impacts of Marine Heatwaves on Subsurface Temperatures and Dissolved Oxygen in the Chesapeake Bay

AbstractSubsurface impacts associated with Marine Heatwaves (MHWs) in estuaries are not well understood, largely due to data scarcity. Using over three decades (1986–2021) of observations from several monitoring programs, this study investigates subsurface temperature and dissolved oxygen (DO) anomalies associated with surface MHWs in the Chesapeake Bay (CB). Seasonal variability in temperature anomalies followed a simple 1‐D response to surface heating with downward heat transport and diffusion controlled by seasonally variable stratification and mixing. Two distinct temperature regimes were found: a thermally stratified spring‐summer regime, when positive temperature anomalies were confined to the surface mixed layer (SML); and a homogeneous fall‐winter regime. Additionally, surface (subsurface) temperatures were elevated for months (days to weeks) before and after MHWs, indicating individual events were shorter than the timescales of elevated temperatures. A simple 1‐D SML heat budget identified air‐estuary heat flux changes as the leading driver of MHW onsets and declines, with latent heat flux being the dominant term. DO anomaly patterns were more complex, with considerable along‐channel gradients. Notable DO decreases (1–4 mg L−1) primarily occurred in the winter/spring below the SML, and the hypoxic zone expanded from spring through fall. Only a small fraction of these DO anomalies could be attributed to MHW temperature‐induced solubility changes, demonstrating that other physical and/or biogeochemical processes dominate changes in DO during these events. In CB, concurrent low DO and persistent high temperatures could compound the impacts of MHWs on this valuable ecosystem, with MHW event impacts likely to be exacerbated by climate change.

Pharmacokinetics of panobinostat: Inter-species difference in metabolic stability.

Panobinostat is a potent pan-HDAC inhibitor that has been tested in multiple studies for the treatment of brain tumors. There have been contrasting views surrounding its efficacy for the treatment of tumors in the CNS following systemic administration when examined in different models or species. We conducted experiments using three different mouse strains or genotypes to have a more comprehensive understanding of the systemic as well as the CNS distributional kinetics of panobinostat. Our study found that panobinostat experienced rapid degradation in vitro in FVB mouse matrices and a faster degradation rate was observed at 37{degree sign}C compared with room temperature and 4{degree sign}C, suggesting that the in vitro instability of panobinostat was due to enzymatic metabolism. Panobinostat also showed inter-strain and inter-species differences in the in vitro plasma stability; and was stable in human plasma. The objective of this study was to examine the in vitro metabolic stability of panobinostat in different matrices and assess the influence of that metabolic stability on the in vivo pharmacokinetics and CNS delivery of panobinostat. Importantly, the plasma stability in various mouse strains was not reflected in the in vivo systemic pharmacokinetic behavior of panobinostat. Several hypotheses arise from this finding, including: the binding of panobinostat to red blood cells, the existence of competing endogenous compounds to enzyme(s), the distribution into tissues with a lower level of enzymatic activity or the metabolism occurring in the plasma is a small fraction of the total metabolism in vivo Significance Statement Panobinostat showed different in vitro degradation in plasma from different mouse strains and genotypes. However, despite the differences surrounding in vitro plasma stability, panobinostat showed similar in vivo pharmacokinetic behavior in different mouse models. This suggests that the inter-strain difference in enzymatic activity did not affect the in vivo pharmacokinetic behavior of panobinostat and its CNS distribution in mice. This lack of translation between in vitro metabolism assays and in vivo disposition can confound drug development.

Observation of geometric phase effect through backward angular oscillations in the H + HD → H2 + D reaction

Quantum interference between reaction pathways around a conical intersection (CI) is an ultrasensitive probe of detailed chemical reaction dynamics. Yet, for the hydrogen exchange reaction, the difference between contributions of the two reaction pathways increases substantially as the energy decreases, making the experimental observation of interference features at low energy exceedingly challenging. We report in this paper a combined experimental and theoretical study on the H + HD → H2 + D reaction at the collision energy of 1.72 eV. Although the roaming insertion pathway constitutes only a small fraction (0.088%) of the overall contribution, angular oscillatory patterns arising from the interference of reaction pathways were clearly observed in the backward scattering direction, providing direct evidence of the geometric phase effect at an energy of 0.81 eV below the CI. Furthermore, theoretical analysis reveals that the backward interference patterns are mainly contributed by two distinct groups of partial waves (J ~ 10 and J ~ 19). The well-separated partial waves and the geometric phase collectively influence the quantum reaction dynamics.

Exploring long-term global environmental impacts of chlorinated paraffins (CPs) in waste: Implications for the Stockholm and Basel Conventions and the global plastic treaty

Chlorinated paraffins (CPs), mainly short-chain CPs (SCCPs) and medium-chain CPs (MCCPs), are currently the most produced and used industrial chemicals related to persistent organic pollutants (POPs) globally. These chemicals are widely detected in the environment and in the human body. As the release of SCCPs and MCCPs from products represents only a small fraction of their stock in products, the potential long-term release of CPs from a large variety of products at the waste stage has become an issue of great concern. The results of this study showed that, by 2050, SCCPs and MCCPs used between 2000 and 2021 will cumulatively generate 226.49 Mt of CP-containing wastes, comprising 8610.13 kt of SCCPs and MCCPs. Approximately 79.72 Mt of CP-containing wastes is predicted to be generated abroad through the international trade of products using SCCPs and MCCPs. The magnitude, distribution, and growth of CP-containing wastes subject to environmentally sound disposal will depend largely on the relevant provisions of the Stockholm and Basel Conventions and the forthcoming global plastic treaty. According to multiple scenarios synthesizing the provisions of the three conventions, 26.6–101.1 Mt of CP-containing wastes will be subject to environmentally sound disposal as POP wastes, which would pose a great challenge to the waste disposal capacity of China, as well as for countries importing CP-containing products. The additional 5-year exemption period for MCCPs is expected to see an additional 10 Mt of CP-containing wastes subject to environmentally sound disposal. Thus, there is an urgent need to strengthen the Stockholm and Basel Conventions and the global plastic treaty.

Overcoming the egress block of Plasmodium sporozoites expressing fluorescently tagged circumsporozoite protein.

Plasmodium sporozoites are the highly motile and invasive forms of the malaria parasite transmitted by mosquitoes. Sporozoites form within oocysts at the midgut wall of the mosquito, egress from oocysts and enter salivary glands prior to transmission. The GPI-anchored major surface protein, the circumsporozoite protein (CSP) is important for Plasmodium sporozoite formation, egress, migration and invasion. To visualize CSP, we previously generated full-length versions of CSP internally tagged with the green fluorescent protein, GFP. However, while these allowed for imaging of sporogony in oocysts, sporozoites failed to egress. Here, we explore different strategies to overcome this block in egress and obtain salivary gland resident sporozoites that express CSP-GFP. Replacing the N-terminal and repeat region with GFP did not allow sporozoite formation. Lowering expression of CSP-GFP at the endogenous locus allowed sporozoite formation but did not overcome egress block. Crossing of CSP-GFP expressing parasites that are blocked in egress with wild-type parasites yielded a small fraction of parasites that entered salivary glands and expressed various levels of CSP-GFP. Expressing CSP-GFP constructs from a silent chromosome region from promoters that are active only post salivary gland invasion yielded normal numbers of fluorescent salivary gland sporozoites, albeit with low levels of fluorescence. We also show that lowering CSP expression by 50% allowed egress from oocysts but not salivary gland entry. In conclusion, Plasmodium berghei parasites with normal CSP expression tolerate a certain level of CSP-GFP without disruption of oocyst egress and salivary gland invasion.

Ion-Exchanged Clinoptilolite as a Substrate for Space Farming

Clinoptilolite, with its structural peculiarities (ion-exchange and adsorbent properties), is an excellent candidate for direct use and various modifications. In this study, we explored the effect of ion exchange and the particle size of clinoptilolite on Raphanus sativus seed germination, plant growth, physiological and biochemical characteristics of plants. Plants were grown, for three consecutive runs, on non-modified clinoptilolite, 0.9–2.5 mm (C-2.5) and 2.5–5.0 mm (C-5.0); clinoptilolite fractions modified with ion exchange with ammonium (CNH4-2.5 and CNH4-5.0); and potassium (CK-2.5 and CK-5.0) ions. Our data revealed that ion exchange with ammonium increased water-holding capacity, while potassium exchange decreased the water-holding capacity of the substrates irrespective of their particle size. The positive effect of small fractions ion-exchanged clinoptilolite (CNH4-2.5 and CK-2.5) on seed germination, during the third run, was established. The small clinoptilolite fractions favored root crop production, particularly in CK-2.5 plants only during the first run. Substantial positive effect on the content of total carbohydrates and polyphenols especially during the third run was established in plants grown on potassium-exchanged clinoptilolite. Our findings support the future exploration of clinoptilolite as a suitable substrate for plant growth in space and ground-based facilities for space-oriented experiments.

A progesterone derivative linked to a stable phospholipid activates breast cancer cell response without leaving the cell membrane

In hormone-responsive breast cancer cells, progesterone (P4) has been shown to act via its nuclear receptor (nPR), a ligand-activated transcription factor. A small fraction of progesterone receptor is palmitoylated and anchored to the cell membrane (mbPR) forming a complex with estrogen receptor alpha (ERα). Upon hormone exposure, either directly or via interaction with ERα, mbPR activates the SRC/RAS/ERK kinase pathway leading to phosphorylation of nPR by ERK. Kinase activation is essential for P4 gene regulation, as the ERK and MSK1 kinases are recruited by the nPR to its genomic binding sites and trigger chromatin remodeling. An interesting open question is whether activation of mbPR can result in gene regulation in the absence of ligand binding to intracellular progesterone receptor (iPR). This matter has been investigated in the past using P4 attached to serum albumin, but the attachment is leaky and albumin can be endocytosed and degraded, liberating P4. Here, we propose a more stringent approach to address this issue by ensuring attachment of P4 to the cell membrane via covalent binding to a stable phospholipid. This strategy identifies the actions of P4 independent from hormone binding to iPR. We found that a membrane-attached progestin can activate mbPR, the ERK signaling pathway leading to iPR phosphorylation, initial gene regulation and entry into the cell cycle, in the absence of detectable intracellular progestin.

The importance of the soluble and colloidal pools for trace metal cycling in deep-sea pore waters

Physical and chemical trace metal speciation are important for our understanding of metal cycling and potential toxicity to marine life. Trace metals can behave differently in diffusion processes or particle-solution interactions and have different bioavailabilities depending on their physical and chemical forms, which often depend on redox conditions. Here we investigated dissolved (&amp;lt; 0.2 µm) and soluble (&amp;lt; 0.02 µm) concentrations of Mn, Co, Ni, Fe, Cu, V, Mo, U, Cd, and As in oxic and suboxic deep-sea sediments of the central equatorial Pacific Ocean. Vanadium, Mo, U, As, and Cd showed no significant concentration differences between their dissolved and soluble forms, suggesting that they are present as inorganic ionic species or organic complexes in the truly dissolved or small colloidal fraction. In contrast, the colloidal fraction (&amp;gt; 0.02 µm &amp;lt; 0.2 µm) of Mn, Co, Ni, and Cu increased with depth in oxic pore waters and Fe had the largest but variable colloidal pool. Soluble Mn, Co, and Ni were released in the uppermost 2-4 cm in the sediment because of reductive dissolution. The increasing colloidal fraction with depth suggests a decrease in the concentration of small organic ligands with depth, that are abundant in the surface sediment pore waters, and instead an increasing importance of larger (&amp;gt; 0.02 µm) inorganic nanoparticles and colloids such as Mn and Fe (oxyhydr)oxides that control Mn, Fe, and Co cycling at depths &amp;gt; 10 cm. The distribution of Ni and Cu cannot be exclusively explained by inorganic nanoparticles and a shift from low to larger high molecular weight organic ligands might occur. These findings provide new insights into trace metal distributions in the dissolved phase, highlighting the diversity of metal complexes and the need to incorporate these in future calculations of benthic metal fluxes and ecotoxicity assessments, especially in oxic pore waters.

Protected Areas and Their Contribution to Sustainable Development

Towards the end of the 19th century, a small fraction of humanity finally embraced an “official” consciousness regarding the conservation of nature [...]