Skin Swabs Research Articles

Antibiotic Susceptibility Pattern of Cutibacterium acnes in Egyptian Acne Patients

Background. Recent studies have revealed that antibiotics are yielding unsatisfactory outcomes in certain patients with acne. Therefore, attention was drawn to antibiotic resistance as a rapidly growing problem that might lead to treatment failure. Objective. The study aims to assess the antibiotic susceptibility patterns of Cutibacterium acne isolates in a sample of Egyptian patients to the antibiotics most frequently prescribed for acne vulgaris. Methods. A total of 155 patients with moderate to severe acne were included in the study. Skin swab samples were collected and inoculated. Cutibacterium acnes was identified based on colonial morphology, Gram stain, and biochemical reactions and further confirmed by VITEK 2 automated systems. Antibiotic susceptibility tests were performed using minimum inhibitory concentrations determined by the Epsilometer test. Results. Cutibacterium acnes was detected in 50 samples (32.2%), alone in 17 (10.9%), and in combination with Staphylococci in 33 (21.3%) cases. The results of the antibiotic susceptibility testing revealed high resistance to erythromycin, followed by clindamycin, tetracycline, trimethoprim/sulfamethoxazole, and doxycycline. Conclusion. Cutibacterium acnes showed high resistance rates to most antibiotics used in the clinical treatment of acne vulgaris.

Alpine salamanders at risk? The current status of an emerging fungal pathogen.

Amphibians globally suffer from emerging infectious diseases like chytridiomycosis caused by the continuously spreading chytrid fungi. One is Batrachochytrium salamandrivorans (Bsal) and its disease ‒ the 'salamander plague' ‒ which is lethal to several caudate taxa. Recently introduced into Western Europe, long distance dispersal of Bsal, likely through human mediation, has been reported. Herein we study if Alpine salamanders (Salamandra atra and S. lanzai) are yet affected by the salamander plague in the wild. Members of the genus Salamandra are highly susceptible to Bsal leading to the lethal disease. Moreover, ecological modelling has shown that the Alps and Dinarides, where Alpine salamanders occur, are generally suitable for Bsal. We analysed skin swabs of 818 individuals of Alpine salamanders and syntopic amphibians at 40 sites between 2017 to 2022. Further, we compiled those with published data from 319 individuals from 13 sites concluding that Bsal infections were not detected. Our results suggest that the salamander plague so far is absent from the geographic ranges of Alpine salamanders. That means that there is still a chance to timely implement surveillance strategies. Among others, we recommend prevention measures, citizen science approaches, and ex situ conservation breeding of endemic salamandrid lineages.

Widespread occurrence of the amphibian chytrid panzootic lineage in Uruguay is constrained by climate.

The amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) causes chytridiomycosis, a disease among the main causes of amphibian declines worldwide. However, Bd studies on Neotropical amphibians from temperate areas are scarce. We present a comprehensive survey of Bd in Uruguay, in temperate central eastern South America, carried out between 2006 and 2014. Skin swabs of 535 specimens of 21 native and exotic frogs were tested by PCR. We used individual-level data to examine the relationship between infection, climatic variables, and their effects on body condition and the number of prey items found in stomach contents. Infection was widespread in free-ranging anurans with an overall prevalence of 41.9%, detected in 15 native species, wild American bullfrogs Aquarana catesbeiana, and captive specimens of Ceratophrys ornata and Xenopus laevis. Three haplotypes of the Bd ITS region were identified in native amphibians, all belonging to the global panzootic lineage (BdGPL), of which only one was present in exotic hosts. Despite high infection frequencies in different anurans, we found no evidence of morbidity or mortality attributable to chytridiomycosis, and we observed no discernible impact on body condition or consumed prey. Climatic conditions at the time of our surveys suggested that the chance of infection is associated with monthly mean temperature, mean humidity, and total precipitation. Temperatures below 21°C combined with moderate humidity and pronounced rainfall may increase the likelihood of infection. Multiple haplotypes of BdGPL combined with high frequencies of infection suggest an enzootic pattern in native species, underscoring the need for continued monitoring.

Prevalence of livestock associated methicillin resistant Staphylococcus aureus (La-mrsa) in domestic livestock of Dharan, Nepal

Introduction: Methicillin Resistant Staphylococcus aureus (MRSA) infection has drawn a lot of attention since studies suggested that animals may act as reservoirs for human infection. Over the past 20 years, MRSA infections have become more prevalent worldwide. MRSA was initially only discovered in humans, but later it was discovered in animals as well. Objectives: The study aimed to determine the prevalence of LA-MRSA in domestic livestock of Dharan, Nepal. Methods: Overall, 320 skin swab samples of cattle (cows) were collected by swabbing the skin of cattle aseptically with a sterile cotton swab and the samples were transported to the laboratory in a cold chain. The samples were streaked in Mannitol salt agar(MSA) containing oxacillin concentration of 6mg/L and incubated at 37°C for 24 hours. Staphylococcus aureus colonies were identified based on cultural characteristics on MSA plates (golden yellow colonies), Gram’s reaction, and positive results for coagulase and catalase test. The purified isolates of MRSA were subjected to antibiotic susceptibility tests and Biofilm formation. Results: MRSA was found to be prevalent in 10% of cattle. Antibiotic-resistant tests reported that MRSA was found to be sensitive to chloramphenicol 12(37.5%) followed by ceftriaxone 12 (37.25%), gentamycin 9(28.12%), cefotaxime 4(12.5%), while 100% of MRSA were resistant to penicillin and vancomycin. The moderate biofilm-forming MRSA was 5(15.625%), followed by 3(9.375%) weak biofilm producers and 24(75%) were negative towards biofilm formation. Conclusion: The prevalence of MRSA (10%) and Vancomycin-Resistant Staphylococcus aureus (100% VRSA) in cattle shows the need for regular surveillance. Chloramphenicol can be a treatment of choice for MRSA infections. However, emerging VRSA is a serious epidemiological issue that needs to be addressed properly. Therefore, Healthcare organizations must adopt precise criteria to control and prevent MRSA infection..

Quantifying and mapping digital dermatitis–associated bacteria in lesion and nonlesion body sites and dairy farm environment

The source of infection of digital dermatitis (DD), an infectious lameness condition, is still uncertain. In this cross-sectional study, we aimed to identify potential reservoirs of DD bacteria in dairy cattle body sites with different stages of the disease and farm environments. We collected skin swabs from 85 dairy cows from 5 herds, 3 with and 2 without DD, from foot, hock, and udder cleft skin (with lesions or not), saliva, urine, and feces. We also obtained environmental samples. Real-time quantitative PCR targeted Treponema phagedenis, Treponema medium, Treponema pedis, Porphyromonas levii, Bacteroides pyogenes, Fusobacterium necrophorum, and Fusobacterium mortiferum. Digital dermatitis-associated Treponema spp. were exclusively detected in DD-affected herds in DD-foot and other skin lesions, healthy skin, saliva, and environmental samples. In contrast, the non-Treponema spp. were found in samples from both DD-negative and affected herds. As expected, DD lesions had higher bacterial loads than healthy skin. Interestingly, similar counts were observed in udder cleft lesions, indicating a potential opportunistic behavior on compromised skin. None of the targeted species were detected in fecal samples, but P. levii, B. pyogenes, and F. necrophorum were detected in urine. All 7 species were detected in saliva, although in low quantities. No associations were observed between the presence of each bacterial species in DD lesions and urine; however, there was an association between the presence of DD-Treponema spp. in lesions and saliva, hock, and udder skin. Feces and urine do not seem to be a DD bacteria primary source, but saliva and other skin lesions may play a role. Longitudinal studies would improve our understanding of DD-associated bacteria's transient or persistent presence in these sites. Investigating the sources of DD-associated bacteria will guide future interventions to minimize bacterial shedding and transmission, ultimately more effectively reducing bacterial load, transmission, and sources of infection in dairy herds.

Paranannizziopsis spp. infections in wild snakes and a qPCR assay for detection of the fungus.

The emergence of ophidiomycosis (or snake fungal disease) in snakes has prompted increased awareness of the potential effects of fungal infections on wild reptile populations. Yet, aside from Ophidiomyces ophidiicola, little is known about other mycoses affecting wild reptiles. The closely related genus Paranannizziopsis has been associated with dermatomycosis in snakes and tuataras in captive collections, and P. australasiensis was recently identified as the cause of skin infections in non-native wild panther chameleons (Furcifer pardalis) in Florida, USA. Here we describe five cases of Paranannizziopsis spp. associated with skin lesions in wild snakes in North America and one additional case from a captive snake from Connecticut, USA. In addition to demonstrating that wild Nearctic snakes can serve as a host for these fungi, we also provide evidence that the genus Paranannizziopsis is widespread in wild snakes, with cases being identified in Louisiana (USA), Minnesota (USA), Virginia (USA), and British Columbia (Canada). Phylogenetic analyses conducted on multiple loci of the fungal strains we isolated identified P. australasiensis in Louisiana and Virginia; the remaining strains from Minnesota and British Columbia did not cluster with any of the described species of Paranannizziopsis, although the strains from British Columbia appear to represent a single lineage. Finally, we designed a pan-Paranannizziopsis real-time PCR assay targeting the internal transcribed spacer region 2. This assay successfully detected DNA of all described species of Paranannizziopsis and the two potentially novel taxa isolated in this study and did not cross-react with closely related fungi or other fungi commonly found on the skin of snakes. The assay was 100% sensitive and specific when screening clinical (skin tissue or skin swab) samples, although full determination of the assay's performance will require additional follow up due to the small number of clinical samples (n = 14 from 11 snakes) available for testing in our study. Nonetheless, the PCR assay can provide an important tool in further investigating the prevalence, distribution, and host range of Paranannizziopsis spp. and facilitate more rapid diagnosis of Paranannizziopsis spp. infections that are otherwise difficult to differentiate from other dermatomycoses.

Determination of phyto-moieties from the traditional therapeutic plant Boswellia serrata Roxb. extract against nosocomial pathogens: in vitro and silico approaches

IntroductionThe present study aimed to examine the in vitro antibacterial activity of Boswellia serrata solvent extracts against multidrug-resistant nosocomial pathogens isolated from skin and wound samples. MethodsB. serrata resin was acquired, and powdered; blended with five different extraction solvents. The collected bacterial isolates from wound and skin swabs were identified using biochemical profiling and classified according to their unique physiological and biochemical characteristics. Three isolated pathogens were exposed to antibiotic drugs via the disk dispersion assay, and the antimicrobial efficiency of the plant extract was assessed against the wound and skin infection-causing nosocomial bacterial pathogens. The qualitative and quantitative examination of plant extracts was carried out by mass spectra and 70 eV electron impact ionisation process. The 2D molecular interaction patterns between beta-lactamase protein and phytocompounds complexes were generated in DS viewer to understand the hydrogen bonding and hydrophobic interaction. ResultsThree antibiotic-resistant strains, Staphylococcus aureus, Pseudomonas aeruginosa, and Acinetobacter baumannii, were isolated and exposed to the extract of B. serrata. Plant extract at 60 µg proven effective against antibiotic-resistant strains of S. aureus, P. aeruginosa, and A. baumannii. In molecular docking studies, it was found that out of the 15 bioactive compounds detected from the plant extract, only three showed significant binding affinity to the bacterial-lactamase protein (AmpC). The auto dock results revealed different crucial affinity values of the bioactive compounds. Cholan-24-oic acid, 3,12-bis(acetyloxy) showed a Dock score of −8.6 kcal/mol for P. aeruginosa, −8.1 kcal/mol for A. baumannii, and −7.6 kcal/mol for S. aureus. Due to its strong binding affinity with antibacterial target proteins, it exhibits exceptional antibacterial properties. ConclusionThe findings confirmed bioactive constituents in B. serrata, with antibacterial activity against antibiotic resistance nosocomial pathogens.

Suspected human anthrax outbreak investigation in a tribal village of Koraput, India, 2021

AbstractBackgroundOdisha is a state in India endemic to anthrax disease with frequent reports of suspected animal cases. A suspected outbreak of anthrax in humans was reported on 24 October 2021 at Tukum village in Koraput district of Odisha, India after a bullock was found dead and consumed by the locals on 17 October 2021.MethodsThis extended outbreak investigation was carried out through house‐to‐house active surveillance from 24 October to 2 November 2021 in the Koraput district. Eschar skin swabs from wounds were collected and processed at District Public Health Laboratory, Koraput, and analyzed in Indian Council of Medical Research‐Regional Medical Research Centre, Bhubaneswar for molecular confirmation. Samples from bone, soil, and dried meat were collected from the contaminated sites and were transported to Animal Diseases Research Institute, Cuttack for confirmation.ResultsFour suspected cases of human anthrax were identified who had handled and consumed dead bullock meat, among which one human had died later. The attack rate of the persons at risk in the village was calculated to be 1.23%. However, no Bacillus anthracis were identified in human swab samples when tested in real‐time polymerase chain reaction. Samples collected from contaminated sites were confirmed to have anthrax bacilli.ConclusionInvestigation revealed that a suspected anthrax cluster outbreak was due to butchering/de‐skinning and consumption of the anthrax‐infected dead animal. The presence of bacilli in human samples could not be confirmed due to the intake of antibiotics before the collection of sample. This finding highlighted the importance of sample collection at a suitable time and a possible need for one health approach for better coordination among the different responsible departments.

Identification and antibiotic susceptibility profiles of anaerobic bacteria isolated from patients with acne vulgaris

Commensal bacteria like the Staphylococcal species are part of the skin microbiota, which helps maintain healthy skin. However, certain factors can lead to these commensals becoming opportunistic pathogens capable of causing diseases like acne vulgaris. Topical and systemic antibiotics have been the main treatment for acne. However, long-term antibiotic usage could result in the emergence of resistant bacterial strains and treatment failure. This study evaluated the antibiotic susceptibility patterns of anaerobic bacteria isolated from clinical acne samples. Skin swabs were collected from 50 acne patients and cultured under anaerobic conditions. The resulting bacterial isolates were identified using biochemical tests and 16S rRNA gene sequencing. The antibiotic susceptibility patterns of the confirmed isolates were determined using the disc diffusion assay for eight commonly prescribed antibiotics for acne treatment. Sequencing results revealed that S. epidermidis was the most isolated bacterial species (68%, n=34), followed by S. aureus (8%, n=4). However, a significant proportion of bacterial isolates were susceptible to all eight tested antibiotics, which is unusual. On the other hand, 26% (n=13) of the tested bacterial species isolates were found to be resistant to clindamycin, while 36% (18) were resistant to erythromycin and 20% (n=10) were to tetracycline. Since there has been limited research regarding the antibiotic resistance patterns of anaerobic acne-associated bacteria in Malaysia, this study can help shed some light on suitable local prescription practices and raise awareness about the cautious use of antibiotics in treating acne vulgaris.

Detection of Malassezia and Bacterial Species among Females Suffering of Dandruff in Shendi City and Antimicrobial Effect of Aloe Vera against the Isolated Microbes

Dandruff is a common scalp condition causing both discomfort and an undesired social image. Various studies dating from the early 1900s have investigated the condition, but an understanding of the underlying mechanisms and etiology of the condition is still in its infancy. Although dandruff isn’t contagious and not serious it may be embarrassing and treatment of it difficult. This is a cross-sectional study conducted on 70 females suffering from dandruff in Shendi city in the period from July to November 2021, aimed to detect the Malassezia and bacterial species among females suffering from dandruff in Shendi city and the antimicrobial effect of Aloe vera against the isolated microbes. Skin swab samples were collected and cultured on both Sabroud dextrose agar containing Gentamicin and blood agar. All isolated organism was Staphylococcus species (S. aureus, S. epidermids), there have no growth of Malassezia species was observed on SDA. The result showed that the age group between (20-24) years was highly affected by age with S. aureus (74%), and S. epidermids (26%), and this condition was observed higher in the rural area representing (84%) of S. aureus and (16%) of S. epidermids. The oily scalp was the most common type of scalp of dandruff (76%) of S. aureus and (24%) of S. epidermids. Staphylococcus species were commonly found with dandruff itching, (73%) of S. aureus and (27%) of S. epidermids, and with the severity of the condition (89%) of S. aureus and (16%) of S. epidermids. Aloe vera extract showed high sensitivity against S. aureus (94%) and S. epidermids (100%). The study concluded that Staphylococcus species (S. aureus, S. epidermids) were the most causes of dandruff, which increased in adult age and distributed among more females from a rural areas. Staphylococcus species are found commonly with dandruff itching and the severity of dandruff. Aloe vera showed high effectiveness against S. aureus and S. epidermids.

Species- and strain-level diversity of Corynebacteria isolated from human facial skin

BackgroundSequencing of the human skin microbiome revealed that Corynebacterium is an ubiquitous and abundant bacterial genus on human skin. Shotgun sequencing further highlighted the microbial “dark matter” of the skin microbiome, consisting of microorganisms, including corynebacterial species that were not cultivated and genome-sequenced so far. In this pilot project, facial human skin swabs of 13 persons were cultivated to selectively obtain corynebacteria. 54 isolates were collected and 15 of these were genome-sequenced and the pan-genome was determined. The strains were biochemically characterized and antibiotic susceptibility testing (AST) was performed.ResultsAmong the 15 sequenced strains, nine different corynebacterial species were found, including two so far undescribed species, tentatively named “Corynebacterium vikingii” and “Corynebacterium borealis”, for which closed genome sequences were obtained. Strain variability beyond the species level was determined in biochemical tests, such as the variable presence of urease activity and the capacity to ferment different sugars. The ability to grow under anaerobic conditions on solid agar was found to be species-specific. AST revealed resistances to clindamycin in seven strains. A Corynebacterium pseudokroppenstedtii strain showed additional resistance towards beta-lactam and fluoroquinolone antibiotics; a chromosomally located 17 kb gene cluster with five antibiotic resistance genes was found in the closed genome of this strain.ConclusionsTaken together, this pilot study identified an astonishing diversity of cutaneous corynebacterial species in a relatively small cohort and determined species- and strain-specific individualities regarding biochemical and resistance profiles. This further emphasizes the need for cultivation-based studies to be able to study these microorganisms in more detail, in particular regarding their host-interacting and, potentially, -beneficial and/or -detrimental properties.

Detection of volatile organic compounds in headspace of Klebsiella pneumoniae and Klebsiella oxytoca colonies

IntroductionEarly diagnosis of infections and sepsis is essential as adequate therapy improves the outcome. Unfortunately, current diagnostics are invasive and time-consuming, making diagnosis difficult, especially in neonatology. Novel non-invasive analytical methods might be suitable to detect an infection at an early stage and might even allow identification of the pathogen. Our aim is to identify specific profiles of volatile organic compounds (VOCs) of bacterial species.MethodsUsing multicapillary column-coupled ion mobility spectrometry (MCC/IMS), we performed headspace measurements of bacterial cultures from skin and anal swabs of premature infants obtained during weekly screening for bacterial colonization according to KRINKO. We analyzed 25 Klebsiella pneumoniae (KP) cultures on MacConkey (MC) agar plates, 25 Klebsiella oxytoca (KO) cultures on MC agar and 25 bare MC agar plates as a control group.ResultsUsing MCC/IMS, we identified a total of 159 VOC peaks. 85 peaks allowed discriminating KP and bare MC agar plates, and 51 peaks comparing KO and bare MC agar plates and 6 peaks between KP and KO (significance level of p < 0.05 after Bonferroni post hoc analysis), respectively. Peaks P51 (n-Decane) and P158 (Phenylethyl Alcohol), showed the best sensitivity/specificity/ positive predictive value/negative predictive value of 99.9% each (p < 0.001) for KP. P158 showed the best sensitivity/specificity/positive predictive value/negative predictive value of 99.9% each (p < 0.001) for KO. Comparing KP and KO, best differentiation was enabled using peaks P72, P97 and P16 with sensitivity/specificity/positive predictive value/negative predictive value of 76.0%, 84.0%, 82.6%, 77.8%, respectively (p < 0.05).DiscussionWe developed a method for the analysis of VOC profiles of bacteria. Using MCC/IMS, we demonstrated that VOCs derived from bacteria are clearly distinguishable from a bare agar plate. Characteristic peaks obtained by MCC/IMS are particularly suitable for the species-specific identification and differentiation of KP and KO. Thus, MCC/IMS might be a useful tool for in vitro diagnostics. Future studies must clarify whether similar patterns of VOCs can be detected in vivo in patients that are colonized or infected with KP or KO to enable rapid and accurate diagnosis of bacterial colonization.

Host species and habitat shape fish-associated bacterial communities: phylosymbiosis between fish and their microbiome

BackgroundWhile many studies have reported that the structure of the gut and skin microbiota is driven by both species-specific and habitat-specific factors, the relative importance of host-specific versus environmental factors in wild vertebrates remains poorly understood. The aim of this study was to determine the diversity and composition of fish skin, gut, and surrounding water bacterial communities (hereafter referred to as microbiota) and assess the extent to which host habitat and phylogeny predict microbiota similarity. Skin swabs and gut samples from 334 fish belonging to 17 species were sampled in three Laurentian Great Lakes (LGLs) habitats (Detroit River, Lake Erie, Lake Ontario). We also collected and filtered water samples at the time of fish collection. We analyzed bacterial community composition using 16S metabarcoding and tested for community variation.ResultsWe found that the water microbiota was distinct from the fish microbiota, although the skin microbiota more closely resembled the water microbiota. We also found that environmental (sample location), habitat, fish diet, and host species factors shape and promote divergence or convergence of the fish microbiota. Since host species significantly affected both gut and skin microbiota (separately from host species effects), we tested for phylosymbiosis using pairwise host species phylogenetic distance versus bacterial community dissimilarity. We found significant phylogenetic effects on bacterial community dissimilarity, consistent with phylosymbiosis for both the fish skin and gut microbiota, perhaps reflecting the longstanding co-evolutionary relationship between the host species and their microbiomes.ConclusionsAnalyzing the gut and skin mucus microbiota across diverse fish species in complex natural ecosystems such as the LGLs provides insights into the potential for habitat and species-specific effects on the microbiome, and ultimately the health, of the host.13rgRWqcw5pvG7aonCbZg2Video

On-farm epidemiology, virulence profiling, and molecular characterization of methicillin-resistant Staphylococcus aureus at goat farms

Antimicrobial resistance (AMR) becomes a challenging issue that limits the therapeutic options for both veterinary and public health professionals. The current study aimed to investigate the on-farm epidemiology, antibiotics resisting profiling, virulence analysis, and molecular detection of methicillin-resistant Staphylococcus aureus (MRSA) at the caprine-human interface. A total of 768 goat milk samples and 94 skin swabs from farm personnel were collected from 30 goat flocks and processed for isolation of S. aureus. The study isolates were confirmed as MRSA based on the oxacillin and cefoxitin disc diffusion test and the presence of mecA gene. MRSA isolates of goats and human origin were characterized and further evaluated for the presence of virulence genes responsible for intramammary infections and public health hazards. The results revealed 26.82 % and 27.79 % goat milk samples and human samples positive for S. aureus, respectively. A higher MRSA prevalence of 35.92 % and 10.71 % was found in goat and human isolates respectively. The phylogenetic analysis revealed a lesser extent of homology in mecA gene of S. aureus isolates at the caprine-human interface. Moreover, this study revealed strong evolutionary connection between the study isolates and MRSA isolates of Pakistani cattle and buffalo while the in-silico protein analysis showed that all sequences have the same protein motifs resembling penicillin binding protein 2a. The risk factors analysis revealed that teat length, drainage system, hygienic measures during milking, use of teat dip, teat injury, and veterinary services were significantly associated with subclinical mastitis in goats. A total of 43.24 % of local MRSA isolates showed multi-drug resistance (MDR). The isolates showed higher resistance to oxytetracycline followed by gentamicin and vancomycin while moxifloxacin, and linezolid were among the susceptible antibiotics. Local MRSA isolates carried virulence markers (nuc and coag genes) and biofilm-associated icaA (43.24 %) and icaD (29.73 %) genes which are responsible for the intramammary infection. The local isolates also carried the virulence genes of public health concern including the enterotoxin C (sec) gene (24.3 %), enterotoxins B (seb) gene (5.41 %), and enterotoxin D (sed) gene (2.7 %). Enterotoxins A (sea) and E (see) genes were not detected in any isolate. The study concluded that MRSA is an emerging and prevailing pathogen in dairy goats with a high potential to transmit to associated human beings. The presence of a variety of virulence factors as well as the associated antibiotic resistance makes MRSA a potential threat at animal-human interface and thus demands further research.

Prevalence of Multidrug-Resistant Pseudomonas aeruginosa Isolated from Dairy Cattle, Milk, Environment, and Workers' Hands.

Pseudomonas aeruginosa is an opportunistic pathogen causing severe infection in animals and humans. This study aimed to determine the ecological distribution and prevalence of multidrug-resistant (MDR) P. aeruginosa isolated from dairy cattle, the environment, and workers' hand swabs. Samples (n = 440) were collected from farms and households (n = 3, each). Rectal swabs, udder skin swabs, milk, workers' hand swabs, feed, water, water sources, and beddings were collected. Samples were subjected to the bacterial identification of P. aeruginosa via 16S rRNA. Antimicrobial resistance (AMR) was detected either phenotypically using an antibiotic susceptibility test or genotypically with AMR resistance genes (ARGs) such as drfA, sul1, and ermB. P. aeruginosa was detected on dairy farms and households (10.3-57.5%, respectively), with an average of 23.2%. The resistance of dairy farm strains was observed against sulfamethoxazole, imipenem, cefepime, piperacillin-tazobactam, and gentamycin (100%, 72.7%, 72.7%, 68.8%, and 63.3%, respectively). Meanwhile, the resistance of household strains was observed against sulfamethoxazole, imipenem, amoxicillin, gentamicin, cefepime, and erythromycin by 91.3%, 82.6%, 75.4%, 75.4%, 68.1%, and 63.8%, respectively. The susceptibility of farm strains was detected against norfloxacin, ciprofloxacin, and levofloxacin (90.9%, 84.8%, and 72.7%, respectively). Meanwhile, the susceptibility of household strains was detected against ciprofloxacin, amikacin, and norfloxacin (100%, 84.1%, and 72.5%, respectively). About 81.4% of P. aeruginosa strains were MDR. ARGs (drfA, sul1, and ermB) were detected in farm strains (48.5%, 72.7%, and 24.4%, respectively) and household strains (50.7%, 72.5%, and 47.8%, respectively). Almost all P. aeruginosa had MAR over 0.2, indicating repeated application of antibiotics. P. aeruginosa prevalence was fivefold higher in households than on farms. MDR strains were higher amongst household strains than farm strains.

The Bern Birth Cohort (BeBiCo) to study the development of the infant intestinal microbiota in a high-resource setting in Switzerland: rationale, design, and methods

BackgroundMicrobiota composition is fundamental to human health with the intestinal microbiota undergoing critical changes within the first two years of life. The developing intestinal microbiota is shaped by maternal seeding, breast milk and its complex constituents, other nutrients, and the environment. Understanding microbiota-dependent pathologies requires a profound understanding of the early development of the healthy infant microbiota.MethodsTwo hundred and fifty healthy pregnant women (≥20 weeks of gestation) from the greater Bern area will be enrolled at Bern University hospital’s maternity department. Participants will be followed as mother-baby pairs at delivery, week(s) 1, 2, 6, 10, 14, 24, 36, 48, 96, and at years 5 and 10 after birth. Clinical parameters describing infant growth and development, morbidity, and allergic conditions as well as socio-economic, nutritional, and epidemiological data will be documented. Neuro-developmental outcomes and behavior will be assessed by child behavior checklists at and beyond 2 years of age.Maternal stool, milk, skin and vaginal swabs, infant stool, and skin swabs will be collected at enrolment and at follow-up visits. For the primary outcome, the trajectory of the infant intestinal microbiota will be characterized by 16S and metagenomic sequencing regarding composition, metabolic potential, and stability during the first 2 years of life. Secondary outcomes will assess the cellular and chemical composition of maternal milk, the impact of nutrition and environment on microbiota development, the maternal microbiome transfer at vaginal or caesarean birth and thereafter on the infant, and correlate parameters of microbiota and maternal milk on infant growth, development, health, and mental well-being.DiscussionThe Bern birth cohort study will provide a detailed description and normal ranges of the trajectory of microbiota maturation in a high-resource setting. These data will be compared to data from low-resource settings such as from the Zimbabwe-College of Health-Sciences-Birth-Cohort study. Prospective bio-sampling and data collection will allow studying the association of the microbiota with common childhood conditions concerning allergies, obesity, neuro-developmental outcomes , and behaviour.Trial registrationThe trial has been registered at www.clinicaltrials.gov, Identifier: NCT04447742

Scabies education and detection at Raudlatul Musthofa junior high school

Scabies is a skin disease endemic in tropical and subtropical climates that is highly contagious and generally affects groups of people with low socioeconomic conditions, poor personal hygiene and sanitation. This activity aimed to make efforts to prevent, provide education, and assist public health development so that it is expected to improve public health in boarding schools students. This study aims to make efforts to prevent, provide education, and assist public health development so that it is expected to improve public health in boarding schools. The sample to be analyzed was 19 students from Raudlatul Junior High School. Examination of parasites that cause scabies is done with a skin swab. The results of observations that have been made of Raudlatul Musthofa Junior High School students show that the majority of students have carried out personal hygine well, namely all 19 students (100%) bathing at least twice a day using soap, keeping hands and feet clean, and changing clothes when dirty. A total of 14 students (74%) do not exchange personal items such as towels, do not take turns in clothes, and do not dry clothes in the room. A total of 15 students (79%) cleaned the bed, 18 students (95%) did not lend toiletries such as soap, and 16 students (84%) did not experience symptoms of frequent itching at night, rashes (spots), wounds, or dry and crusty skin. The results of skin swab examinations on 19 students at Raudlatul Musthofa seen under a microscope obtained as many as 13 students (68%) samples contained bacteria and as many as 6 students (32%) samples contained fungi.

Ethnic endotypes in paediatric atopic dermatitis depend on immunotype, lipid composition and microbiota of the skin.

Atopic dermatitis (AD) endotypes differ with ethnicity. We examined the skin microbiota, cytokine and lipid profiles in Greenlandic Inuit and Danish children with AD. Twenty-five Inuit children with AD and 25 Inuit control children were clinically examined and compared to previously collected data from 25 Danish children with AD. Skin tape strips and skin swabs were collected from lesional and non-lesional skin. Levels of cutaneous immune biomarkers, free sphingoid bases and their (glycosyl)ceramides were analysed. Skin swabs were analysed with 16S rRNA and tuf gene for characterization of bacterial species communities. Bacterial β-diversity was significantly different between Inuit and Danish AD skin, in both lesional (p < 0.001) and non-lesional (p < 0.001) AD skin, and there was a higher relative abundance of Staphylococcus aureus in Danish compared to Inuit lesional (53% vs. 8%, p < 0.01) and non-lesional skin (55% vs. 5%, p < 0.001). Danish AD children had a higher α-diversity than Inuit children in non-lesional (p < 0.05) but not in lesional skin. Significantly higher levels of type 2 immunity cytokine interleukin (IL)-4 (p < 0.05) and IL-5 (p < 0.01) were identified in Inuit compared to Danish AD children. In contrast, IL-33 (p < 0.01) was higher in Danish lesional and non-lesional AD skin. Higher levels of long-chain glucosylceramide (GlcCER)[S](d26:1) were found in lesional (p < 0.001) and non-lesional (p < 0.001) Inuit skin compared with Danish AD skin. NMF levels were similar in Inuit and Danish AD skin. Skin microbiota, cytokine and lipid composition differed significantly between Inuit and Danish children with AD and showed a stronger type 2 immune signature in Inuit children.

The effects of long-pulsed alexandrite laser therapy on facial redness and skin microbiota compositions in rosacea: Aprospective, multicentre, single-arm clinical trial.

Rosacea is a chronic skin disorder characterised by abnormal neurovasculature and inflammation in the central region of the face. The efficacy of pulsed-dye laser and intense pulsed light treatments for rosacea have been demonstrated in several clinical trials. However, there is currently no research on the efficacy of long-pulsed alexandrite laser (LPAL) therapy alone for rosacea-related facial redness and its effect on skin microbiota. To evaluate the efficacy of LPAL therapy on facial redness in rosacea and assess changes in skin microbiota composition. Subjects with rosacea (n = 21, mean age: 39.2 ± 11.3 years) were recruited from two medical institutions and received monthly LPAL treatments (Clarity II™, Lutronic Corp.) for 3 months. At each visit, clinical photographs were taken, and erythema was measured using a spectrometer. At the initial and final visits, the Dermatology Life Quality Index (DLQI) and Skin Sensitivity Questionnaire (SSQ) were evaluated. Skin swabs were obtained at the initial and final visit, and facial microbiome composition was analysed using 16S rRNA amplicon sequencing. After three LPAL treatment sessions, the average facial erythema index, measured using Mexameter® decreased significantly from 360.0 ± 96.7 at baseline to 312.0 ± 94.5 at the final visit (p < .05). The DLQI and SSQ showed significant improvement of symptoms. Skin microbiome diversity and relative abundance were altered significantly, particularly in the genera Clostridium, Lawsonella, Bacteroides, and Lactobacillus. LPAL therapy alone showed favourable efficacy for the treatment of facial redness in rosacea, with some impacts on the skin microbiota composition.

16S Ribosomal Gene Sequencing, Phylogeny and Multidrug Resistance of Pseudomonas aeruginosa Isolated from Clinical Samples at a Tertiary Healthcare Facility in Nigeria

This work sequenced 16S ribosomal gene, determined phylogeny and multidrug resistance of pseudomonas aeruginosa isolated from clinical samples at a tertiary healthcare facility in Nigeria. A total of 184 clinical specimens were collected from patients and were characterized by standard methods of culturing and biochemical tests. One of the bacterial isolates was selected and subjected to molecular identification using 16S rRNA gene sequencing by Sanger method. P. aeruginosa was subjected to antibiotic sensitivity testing by Kirby Bauer disc diffusion technique. After culturing, 94 (51.08%) were positive for bacterial growth; out of 94 isolates of P. aeruginosa, 15 (15.96%) were from ear swabs, 14 (14.89%) from skin swabs, 20 (21.28%) from burn wound samples, 18 (19.15) from used cotton wool, 12 (12.76%) from catheter, and 4 (4.25% each) from urine and sputum. Also, this study recorded high prevalence rate of isolates among the female than male (63.83% and 36.17%, respectively), and the highest average (34%) of isolates were recorded among the age group 36-45 years and the lowest prevalence (5.22%) was recorded among the age group 15-25 years. The isolate demonstrated high resistance to beta-lactams (Ampicillin, Amoxicillin, Ampicillin, Cloxacillin, Augmentin and Ceftazidime). Results also revealed resistance to macrolide (Erythromycin) and sulphonamide (Septrin); and the organism was resistant to two aminoglycosides (Gentamycin and Amikacin) but sensitive to chloramphenicol. The quinolones (Ciprofloxacin, Levofloxacin and Norfloxacin) were very effective against the bacterium. There was statistically significant difference amongst the zones of inhibition at (P≤ 0.05) exhibited by the different antibiotics. The quinolones may therefore be considered as reserve drugs for the treatment of P. aeruginosa infections. To avoid resistance development, illicit use of antibiotics is not advised. Continued monitoring of antimicrobial resistance patterns in hospitals and community settings is imperative to provide effective therapeutic options.