Retention Sites Research Articles

Responses of boreal ground beetles (Coleoptera, Carabidae) to different logging regimes during ten years of secondary succession

Many biological responses may develop over long periods of time, and annual community variation should therefore be controlled in ecological research. We sampled carabid beetles over ten years in Norway spruce dominated forests in Southern Finland, harvested using replicated logging treatments of different intensities. We collected carabids in 1995 (prior to logging) and during four post-harvest seasons, 1996-98 and in 2006. The treatments were clear-cutting (no retained trees), modified clear-cutting (retention of three groups of 20-30 trees within one-hectare core) and gap cutting (three 0.16-ha openings within a one-hectare core), and control (mature unharvested forest). Carabids showed remarkable annual and regional variation at assemblage, ecological-group and species levels, such that was independent of treatments. The total species richness, and that of open-habitat carabids, were higher in cleared sites of all treatments than in control stands in 1997-1998 but not in 2006, suggesting that the logging response was ephemeral by many species. The abundances of forest and generalist carabids were little affected by logging. Open-habitat carabids were more abundant in clear-cuts and modified clear-cuts than in gap cuts, which was still detectable in 2006, suggesting a long-term effect. Open-habitat carabids were less abundant in retention sites of modified clear-cuts and gap cuts than in cleared sites, suggesting that retention attenuates assemblage change. Carabid assemblages of logged stands did not differ from control stands in 1996 but they did in 1997-1998, suggesting a one-year delay in logging response. Carabids showed remarkable annual and regional variation at assemblage, ecological-group and species levels, such that was independent of treatments. The total species richness, and that of open-habitat carabids, were higher in cleared sites of all treatments than in control stands in 1997-1998 but not in 2006, suggesting that the logging response was ephemeral by many species. The abundances of forest and generalist carabids were little affected by logging. Open-habitat carabids were more abundant in clear-cuts and modified clear-cuts than in gap cuts, which was still detectable in 2006, suggesting a long-term effect. Open-habitat carabids were less abundant in retention sites of modified clear-cuts and gap cuts than in cleared sites, suggesting that retention attenuates assemblage change. Carabid assemblages of logged stands did not differ from control stands in 1996 but they did in 1997-1998, suggesting a one-year delay in logging response. In 2006, logged and control stands hosted relatively similar assemblages which, together with the above results, suggests a partial faunal recovery. We conclude that even modest retention provides long-term support for forest carabids, but also that their full assemblage recovery takes longer than 10 years.

Quantitative biokinetics over a 28\u2009day period of freshly generated, pristine, 20 nm titanium dioxide nanoparticle aerosols in healthy adult rats after a single two-hour inhalation exposure

BackgroundIndustrially produced quantities of TiO2 nanoparticles are steadily rising, leading to an increasing risk of inhalation exposure for both professionals and consumers. Particle inhalation can result in inflammatory and allergic responses, and there are concerns about other negative health effects from either acute or chronic low-dose exposure.ResultsTo study the fate of inhaled TiO2-NP, adult rats were exposed to 2-h intra-tracheal inhalations of 48V-radiolabeled, 20 nm TiO2-NP aerosols (deposited NP-mass 1.4 ± 0.5 μg). At five time points (1 h, 4 h, 24 h, 7d, 28d) post-exposure, a complete balance of the [48V]TiO2-NP fate was quantified in organs, tissues, carcass, lavage and body fluids, including excretions.After fast mucociliary airway clearance (fractional range 0.16–0.31), long-term macrophage-mediated clearance (LT-MC) from the alveolar region is 2.6-fold higher after 28d (integral fraction 0.40 ± 0.04) than translocation across the air-blood-barrier (integral fraction 0.15 ± 0.01). A high NP fraction remains in the alveoli (0.44 ± 0.05 after 28d), half of these on the alveolar epithelium and half in interstitial spaces. There is clearance from both retention sites at fractional rates (0.02–0.03 d− 1) by LT-MC. Prior to LT-MC, [48V]TiO2-NP are re-entrained to the epithelium as reported earlier for 20 nm inhaled gold-NP (AuNP) and iridium-NP (IrNP).ConclusionComparing the 28-day biokinetics patterns of three different inhaled NP materials TiO2-NP, AuNP and IrNP, the long-term kinetics of interstitial relocation and subsequent re-entrainment onto the lung-epithelium is similar for AuNP and Ir-NP but slower than for TiO2-NP. We discuss mechanisms and pathways of NP relocation and re-entrainment versus translocation. Additionally, after 28 days the integral translocated fractions of TiO2-NP and IrNP across the air-blood-barrier (ABB) are similar and become 0.15 while the translocated AuNP fraction is only 0.04. While NP dissolution proved negligible, translocated TiO2-NP and IrNP are predominantly excreted in urine (~ 0.1) while the urinary AuNP excretion amounts to a fraction of only 0.01. Urinary AuNP excretion is below 0.0001 during the first week but rises tenfold thereafter suggesting delayed disagglomeration. Of note, all three NP dissolve minimally, since no ionic radio-label release was detectable. These biokinetics data of inhaled, same-sized NP suggest significant time-dependent differences of the ABB translocation and subsequent fate in the organism.

Co-transport of graphene oxide and titanium dioxide nanoparticles in saturated quartz sand: Influences of solution pH and metal ions

Increasing production and application of nanomaterials lead to their environmental release possible. The nanomaterials with different properties may transport together in porous media, and consequently affect their environmental fates. In this study, column experiments were conducted to investigate the co-transport of two typical nanomaterials, graphene oxide (GO) and nano-titanium dioxide (nTiO2), in saturated quartz sand in NaCl and CaCl2 electrolyte solutions under both favorable and unfavorable conditions. The breakthrough curves as well as the retained profiles of single and binary nanoparticles were examined. The results indicated that nTiO2 significantly enhanced the GO retention under all examined conditions, especially at lower pH, higher ionic strength and the presence of divalent cation Ca2+. This might be attributed to the formation of less negatively charged and larger-sized GO-nTiO2 agglomerates as well as the increased retention sites on sand surface by preferentially deposited nTiO2. However, GO merely slightly enhanced the transport of nTiO2 in NaCl solutions, whereas had negligible effect on nTiO2 transport and retention in CaCl2 solutions. The highly hydrophilic and mobile GO served as a carrier and facilitated the transport of nTiO2 in NaCl solutions. In CaCl2 solutions, the strong attachment affinity between positively charged nTiO2 and negatively charged quartz sand (at pH 4.5), and dramatical accumulation of large nTiO2 agglomerates near the column inlets (at pH 6.5) led to significant deposition of nTiO2 on quartz sand. The co-presence of GO failed to counteract the retention of nTiO2 particles on sand.

The Influence of Phosphate on the Adsorption-Desorption Kinetics of Vanadium in an Acidic Soil.

Quantitative understanding of the mechanisms controlling the competitive retention and transport of V and phosphate on soils is essential for accurately evaluating the environmental risks of contaminants in the environment. Batch and stir-flow chamber experiments were performed to quantify the extent of kinetics of V and phosphate competitive retention in an acidic soil (Sharkey clay). In this study, a stir-flow model was used to describe tracer and competitive reactive solute adsorption, and desorption processes in soils. Based on optimized and predictive modeling results, a fully reversible-irreversible multi-reaction model successfully described the time-dependent competitive V and phosphate retention and transport process in Sharkey soil. Adsorption for V and phosphate were highly nonlinear and time dependent, where V binding affinities were stronger than those for phosphate. Results from batch experiments indicated that that the rate and extent (amount) of V released increased significantly in the presence of phosphate. Breakthrough curves for V, from stir-flow experiments, were asymmetrical and exhibited slow release or tailing, indicating that nonequilibrium retention on the surface of soil was the dominant mechanism of the time-dependent adsorption of V. Results of stir-flow experiments indicated that increased mobility of V was observed in the presence of phosphate caused by direct competition for available retention sites. In conclusion, increased addition of phosphate causes decreasing sorption capacity and increasing mobility of V and needs to be considered in modeling the fate and transport of V in soil.

Green-tree retention and relative habitat use by mule deer (Odocoileus hemionus) 20 years after harvest of Douglas-fir (Pseudotsuga menziesii) – Lodgepole pine (Pinus contorta) forest

Mule deer (Odocoileus hemionus) are a major mammal species in many interior Douglas-fir (Pseudotsuga menziesii) forest ecosystems in western North America. During winter in areas of relatively high snowpacks, mule deer seem to require older trees with large crowns for snow interception, but these forests are often targeted for harvest. Green-tree retention (GTR) may offer a solution to this conundrum. We tested three hypotheses (H) that, at 20–22 years after harvest, (H1) abundance (e.g., basal area and density of residual trees and understory stand structure) of conifers, (H2) abundance, species richness, and diversity of understory vegetation, and (H3) relative habitat use by mule deer, will decline with lower levels of tree retention. Fecal pellet-groups of deer were counted in summer and winter periods for three years in replicated stands of dispersed retention, aggregated retention, patch-cut, group selection, and uncut forest in mixed Douglas-fir - lodgepole pine (Pinus contorta) forest in southern British Columbia, Canada.Mean basal area, density, and canopy closure of overstory Douglas-fir trees were generally greater in the patch-cut, group selection, and uncut forest sites than dispersed and aggregated retention sites, and hence supported the overstory part of H1. Mean density of understory conifers did not support H1 as the majority of these trees were in the dispersed and aggregated retention stands. There was no difference in mean abundance nor species richness of understory vegetation among treatment sites. Mean species diversity tended to be 1.4–1.8 times higher in the patch-cut and group selection than the other sites, and hence provided weak support for H2. Patch-cut and group selection sites were dominated by Douglas-fir trees in both the overstory and understory, along with potential forage shrub species, and were used by deer more than the dispersed and aggregated retention stands in both summer and winter. Relative habitat use by deer in uncut forest was greater than the retention stands and generally similar to the patch-cut and group selection sites in both seasons. These results suggest that partial harvesting of these mixed Douglas-fir – lodgepole pine stands across a range of opening sizes (e.g., 0.1 to 2–5 ha) should provide suitable habitat for mule deer over time.

Nuclear Rupture at Sites of High Curvature Compromises Retention of DNA Repair Factors

The nucleus is physically linked to the cytoskeleton, adhesions, and extracellular matrix - all of which sustain forces, but their relationships to DNA damage are obscure. We show that nuclear rupture with cytoplasmic mislocalization of multiple DNA repair factors correlates with high nuclear curvature imposed by an external probe or by cell attachment to either aligned collagen fibers or stiff matrix. We imaged lamin B receptor (GFP-LBR), an integral membrane protein that binds lamin B and mirrors lamin B meshwork rupture under AFM tip. Short time kinetics of LBR and cyclic GMP-AMP synthase (cGAS), reveals a steady LBR gap at rupture site colocalized with cGAS binding DNA in tens of seconds. Mislocalization is greatly enhanced by lamin A depletion, requires hours for nuclear reentry, and correlates with an increase in pan-nucleoplasmic foci of the DNA damage marker γH2AX. Excess DNA damage is rescued in ruptured nuclei by cooverexpression of multiple DNA repair factors as well as by soft matrix or inhibition of actomyosin tension. Increased contractility has the opposite effect, and stiff tumors with low lamin A indeed exhibit increased nuclear curvature, more frequent nuclear rupture, and excess DNA damage. Additional stresses likely play a role, but the data suggest high curvature promotes nuclear rupture, which compromises retention of DNA repair factors and favors sustained damage.

Nonwoven flax fibres geotextiles effects on solute heavy metals transport in porous media

ABSTRACTFiltration tests were carried out in laboratory columns filled with crushed sand with and without flax geotextiles to study the transfer and retention of soluble heavy metals. Divalent cations of copper, zinc and lead were simultaneously and continuously injected in filtration columns. Results show that, when geotextiles discs are present the retention of metals in sand is favoured and retention profiles are modified. In addition, and unlike synthetic geotextiles, flax fibres geotextiles contribute to the retention of a significant fraction of the cationic metal pollutants in their own structure. The overall metals retention efficiency of the filter is improved. Competition between cationic metals for adsorption on retention sites occurs in the column in the order Pb > Cu > Zn. Most of the lead is retained in the inlet of the column while copper and even more zinc migrate deeper in the column.

Do Sustainable Drainage Systems favour mosquito proliferation in cities compared to stormwater networks?

ABSTRACTWith the recent emergence of dangerous mosquito species in cities, Sustainable Drainage Systems used to manage stormwater are sometimes suspected to favour their development. In the metropolis of Lyon, the density of mosquitoes were studied in 15 retention, detention and/or infiltration sites, two green roofs, seven swales and 20 gully pots in traditional sewer networks. None of the swales retained water long enough to be sampled. No larvae were detected in the green roofs. Four classical species were found in the retention/detention basins (Culex pipiens, Culex hortensis, Anopheles maculipennis sl and Culiseta longiareolata). They appeared in May, mainly in the artificial habitats (e.g. concrete parts). Gully pots were colonized by Culex pipiens, Culiseta longiareolata during summer and by Aedes albopictus, ‘tiger mosquito’ in autumn. Vegetated systems where water was drained rapidly (i.e. green roofs, infiltration basins or swales) were not significant breeding sites compared to more artificial sites.

Minimizing Virus Transport in Porous Media by Optimizing Solid Phase Inactivation.

The influence of virus type (PRD1 and ΦX174), temperature (flow at 4 and 20°C), a no-flow storage duration (0, 36, 46, and 70 d), and temperature cycling (flow at 20°C and storage at 4°C) on virus transport and fate were investigated in saturated sand-packed columns. The vast majority (84-99.5%) of viruses were irreversibly retained on the sand, even in the presence of deionized water and beef extract at pH = 11. The reversibly retained virus fraction () was small (1.6 × 10 to 0.047) but poses a risk of long-term virus contamination. The value of and associated transport risk was lower at a higher temperature and for increases in the no-flow storage period due to the temperature dependency of the solid phase inactivation. A model that considered advective-dispersive transport, attachment (), detachment (), solid phase inactivation (μ), and liquid phase inactivation (μ) coefficients, and a Langmuirian blocking function provided a good description of the early portion of the breakthrough curve. The removal parameters were found to be in the order of > μ >> μ. Furthermore, μ was an order of magnitude higher than μ for PRD1, whereas μ was two and three orders of magnitude higher than μ for ΦX174 at 4 and 20°C, respectively. Transport modeling with two retention, release, and inactivation sites demonstrated that a small fraction of viruses exhibited a much slower release and solid phase inactivation rate, presumably because variations in the sand and virus surface roughness caused differences in the strength of adhesion. These findings demonstrate the importance of solid phase inactivation, temperature, and storage periods in eliminating virus transport in porous media. This research has potential implications for managed aquifer recharge applications and guidelines to enhance the virus removal by controlling the temperature and aquifer residence time.

Transport and retention of silver nanoparticles in soil: Effects of input concentration, particle size and surface coating

Soils are considered as a major sink for engineered nanoparticles (ENPs) because of their inevitable release to the subsurface environment during production, transportation, use and disposal processes. In this context, the transport and retention of silver nanoparticles (AgNPs) with different input particle concentration, particle size, and surface coating were investigated in clay loam using water-saturated column experiments. Our results showed that the mobility of AgNPs in the soil was considerably low, and >73.9% of total injected AgNPs (except for no coating condition) was retained in columns. This is primarily due to the high specific surface area and favorable retention sites in soil. Increased transport of AgNPs occurred at higher input concentration and smaller particle size. The presence of surface coatings (i.e., polyvinylpyrrolidone (PVP) and citrate) further promoted the transport and reduced the retention of AgNPs in soil, which is likely due to their effective blocking of the solid-phase sites that are originally available for AgNPs retention. Although the shape of retention profiles (RPs) of AgNPs was either hyperexponential or nonmonotonic that is different from the colloid filtration theory prediction, the 1-species (consider both time- and depth-dependent retention) and/or 2-species (account for the release of reversibly deposited AgNPs) model successfully described the transport behaviors of AgNPs in soil columns under all the investigated conditions. This study proves the applicability of mathematical model in predicting the fate and transport of ENPs in real soils, and our findings presented herein are significant to ultimately develop management strategies for reducing the potential risks of groundwater contamination due to ENPs entering the environment.

Variable retention harvesting influences belowground plant-fungal interactions of Nothofagus pumilio seedlings in forests of southern Patagonia.

BackgroundThe post-harvest recovery and sustained productivity of Nothofagus pumilio forests in Tierra del Fuego may be affected by the abundance and composition of ectomycorrhizal fungi (EMF). Timber harvesting alters EMF community structure in many managed forests, but the impacts of harvesting can vary with the management strategy. The implementation of variable retention (VR) management can maintain, increase, or decrease the diversity of many species, but the effects of VR on EMF in the forests of southern Patagonia have not been studied, nor has the role of EMF in the regeneration process of these forests.MethodsWe evaluated the effects of VR management on the EMF community associated with N. pumilio seedlings. We quantified the abundance, composition, and diversity of EMF across aggregate (AR) and dispersed (DR) retention sites within VR managed areas, and compared them to primary forest (PF) unmanaged stands. EMF assemblage and taxonomic identities were determined by ITS-rDNA sequencing of individual root tips sampled from 280 seedlings across three landscape replicates. To better understand seedling performance, we tested the relationships between EMF colonization, EMF taxonomic composition, seedling biomass, and VR treatment.ResultsThe majority of EMF taxa were Basidiomycota belonging to the families Cortinariaceae (n = 29), Inocybaceae (n = 16), and Thelephoraceae (n = 8), which was in agreement with other studies of EMF diversity in Nothofagus forests. EMF richness and colonization was reduced in DR compared to AR and PF. Furthermore, EMF community composition was similar between AR and PF, but differed from the composition in DR. EMF community composition was correlated with seedling biomass and soil moisture. The presence of Peziza depressa was associated with higher seedling biomass and greater soil moisture, while Inocybe fibrillosibrunnea and Cortinarius amoenus were associated with reduced seedling biomass and lower soil moisture. Seedling biomass was more strongly related to retention type than EMF colonization, richness, or composition.DiscussionOur results demonstrate reduced EMF attributes and altered composition in VR treatments relative to PF stands, with stronger impacts in DR compared to AR. This suggests that VR has the potential to improve the conservation status of managed stands by supporting native EMF in AR. Our results also demonstrate the complex linkages between retention treatments, fungal community composition, and tree growth at individual and stand scales.

Alterations in sperm DNA methylation, non-coding RNA expression, and histone retention mediate vinclozolin-induced epigenetic transgenerational inheritance of disease.

Epigenetic transgenerational inheritance of disease and phenotypic variation can be induced by several toxicants, such as vinclozolin. This phenomenon can involve DNA methylation, non-coding RNA (ncRNA) and histone retention, and/or modification in the germline (e.g. sperm). These different epigenetic marks are called epimutations and can transmit in part the transgenerational phenotypes. This study was designed to investigate the vinclozolin-induced concurrent alterations of a number of different epigenetic factors, including DNA methylation, ncRNA, and histone retention in rat sperm. Gestating females (F0 generation) were exposed transiently to vinclozolin during fetal gonadal development. The directly exposed F1 generation fetus, the directly exposed germline within the fetus that will generate the F2 generation, and the transgenerational F3 generation sperm were studied. DNA methylation and ncRNA were altered in each generation rat sperm with the direct exposure F1 and F2 generations being distinct from the F3 generation epimutations. Interestingly, an increased number of differential histone retention sites were found in the F3 generation vinclozolin sperm, but not in the F1 or F2 generations. All three different epimutation types were affected in the vinclozolin lineage transgenerational sperm (F3 generation). The direct exposure generations (F1 and F2) epigenetic alterations were distinct from the transgenerational sperm epimutations. The genomic features and gene pathways associated with the epimutations were investigated to help elucidate the integration of these different epigenetic processes. Our results show that the three different types of epimutations are involved and integrated in the mediation of the epigenetic transgenerational inheritance phenomenon.

Epigenetic Transgenerational Inheritance of Altered Sperm Histone Retention Sites

A variety of environmental toxicants and factors have been shown to induce the epigenetic transgenerational inheritance of disease and phenotypic variation. Epigenetic alterations in the germline (sperm or egg) are required to transmit transgenerational phenotypes. The current study was designed to investigate the potential role of histones in sperm to help mediate the epigenetic transgenerational inheritance. The agricultural fungicide vinclozolin and the pesticide DDT (dichlorodiphenyltrichloroethane) were independently used to promote the epigenetic transgenerational inheritance of disease. Purified cauda epididymal sperm were collected from the transgenerational F3 generation control and exposure lineage male rats for histone analysis. A reproducible core of histone H3 retention sites was observed using an H3 chromatin immunoprecipitation (ChIP-Seq) analysis in control lineage sperm. Interestingly, the same core group of H3 retention sites plus additional differential histone retention sites (DHRs) were observed in the F3 generation exposure lineage sperm. Although new histone H3 retention sites were observed, negligible change in histone modification (methylation of H3K27me3) was observed between the control and exposure lineages. Observations demonstrate that in addition to alterations in sperm DNA methylation and ncRNA previously identified, the induction of differential histone retention sites (DHRs) also appear to be involved in environmentally induced epigenetic transgenerational inheritance.

High Resolution Monitoring of River Bluff Erosion Reveals Failure Mechanisms and Geomorphically Effective Flows

Using a combination of Structure from Motion and time lapse photogrammetry, we document rapid river bluff erosion occurring in the Greater Blue Earth River (GBER) basin, a muddy tributary to the sediment-impaired Minnesota River in south central Minnesota. Our datasets elucidated dominant bluff failure mechanisms and rates of bluff retreat in a transient system responding to ongoing streamflow increases and glacial legacy impacts. Specifically, we document the importance of fluvial scour, freeze–thaw, as well as other drivers of bluff erosion. We find that even small flows, a mere 30% of the two-year recurrence interval flow, are capable of causing bluff erosion. During our study period (2014–2017), the most erosion was associated with two large flood events with 13- and 25-year return periods. However, based on the frequency of floods and magnitude of bluff face erosion associated with floods over the last 78 years, the 1.2-year return interval flood has likely accomplished the most cumulative erosion, and is thus more geomorphically effective than larger magnitude floods. Flows in the GBER basin are nonstationary, increasing across the full range of return intervals. We find that management implications differ considerably depending on whether the bluff erosion-runoff power law exponent, γ, is greater than, equal to, or less than 1. Previous research has recommended installation of water retention sites in tributaries to the Minnesota River in order to reduce flows and sediment loading from river bluffs. Our findings support the notion that water retention would be an effective practice to reduce sediment loading and highlight the importance of managing for both runoff frequency and magnitude.

Transport and retention of surfactant- and polymer-stabilized engineered silver nanoparticles in silicate-dominated aquifer material.

Packed column experiments were conducted to investigate the transport and blocking behavior of surfactant- and polymer-stabilized engineered silver nanoparticles (Ag-ENPs) in saturated natural aquifer media with varying content of material < 0.063 mm in diameter (silt and clay fraction), background solution chemistry, and flow velocity. Breakthrough curves for Ag-ENPs exhibited blocking behavior that frequently produced a delay in arrival time in comparison to a conservative tracer that was dependent on the physicochemical conditions, and then a rapid increase in the effluent concentration of Ag-ENPs. This breakthrough behavior was accurately described using one or two irreversible retention sites that accounted for Langmuirian blocking on one site. Simulated values for the total retention rate coefficient and the maximum solid phase concentration of Ag-ENPs increased with increasing solution ionic strength, cation valence, clay and silt content, decreasing flow velocity, and for polymer-instead of surfactant-stabilized Ag-ENPs. Increased Ag-ENP retention with ionic strength occurred because of compression of the double layer and lower magnitudes in the zeta potential, whereas lower velocities increased the residence time and decreased the hydrodynamics forces. Enhanced Ag-ENP interactions with cation valence and clay were attributed to the creation of cation bridging in the presence of Ca2+. The delay in breakthrough was always more pronounced for polymer-than surfactant-stabilized Ag-ENPs, because of differences in the properties of the stabilizing agents and the magnitude of their zeta-potential was lower. Our results clearly indicate that the long-term transport behavior of Ag-ENPs in natural, silicate dominated aquifer material will be strongly dependent on blocking behavior that changes with the physicochemical conditions and enhanced Ag-ENP transport may occur when retention sites are filled.

Alterations in sperm DNA methylation, non-coding RNA and histone retention associate with DDT-induced epigenetic transgenerational inheritance of disease

BackgroundEnvironmental toxicants such as DDT have been shown to induce the epigenetic transgenerational inheritance of disease (e.g., obesity) through the germline. The current study was designed to investigate the DDT-induced concurrent alterations of a number of different epigenetic processes including DNA methylation, non-coding RNA (ncRNA) and histone retention in sperm.MethodsGestating females were exposed transiently to DDT during fetal gonadal development, and then, the directly exposed F1 generation, the directly exposed germline F2 generation and the transgenerational F3 generation sperm were investigated.ResultsDNA methylation and ncRNA were altered in each generation sperm with the direct exposure F1 and F2 generations being predominantly distinct from the F3 generation epimutations. The piRNA and small tRNA were the most predominant classes of ncRNA altered. A highly conserved set of histone retention sites were found in the control lineage generations which was not significantly altered between generations, but a large number of new histone retention sites were found only in the transgenerational generation DDT lineage sperm.ConclusionsTherefore, all three different epigenetic processes were concurrently altered as DDT induced the epigenetic transgenerational inheritance of sperm epimutations. The direct exposure generations sperm epigenetic alterations were distinct from the transgenerational sperm epimutations. The genomic features and gene associations with the epimutations were investigated to help elucidate the integration of these different epigenetic processes. Observations demonstrate all three epigenetic processes are involved in transgenerational inheritance. The different epigenetic processes appear to be integrated in mediating the epigenetic transgenerational inheritance phenomenon.

Ultrasonic characterisation of particle retention by a double porosity medium

ABSTRACTA study was undertaken to characterise the evolution of the clogging of various porous media during filtration experiments. Long-term tracer tests were carried out at various flow velocities. To highlight the effects of intraporosity on transport and retention mechanisms, both single porosity and double porosity media (DPM) were used. The presence of matrix porosity in the two investigated DPM provided additional sites, promoting retention of suspended particles (SP). The particle size distribution (PSD) of the recovered particles increased with time. However, and due to the additional retention sites in intraporosity, the changes in PSD with time were slower for tests on DPM. Ultrasonic transmission was used to detect modifications to the properties of the porous media induced by particle retention. The results demonstrate the capacity of ultrasound for detecting the evolution of physical clogging as a consequence of particle deposition.

Stylet penetration activities of the whitefly Bemisia tabaci associated with inoculation of the crinivirus Tomato chlorosis virus.

Bemisiatabaci is an important vector of numerous plant viruses, including the emergent semi-persistently transmitted crinivirus Tomato chlorosis virus (ToCV). Its vector feeding behaviour is complex, with important implications for virus transmission, epidemiology and control. Thus, the objective of this study was to investigate the role of the stylet penetration activities of B. tabaci in the inoculation of ToCV in tomatoes by using the electrical penetration graph (EPG) technique. EPG recordings were classified into six categories depending on the waveforms observed. The results showed that ToCV inoculation is mainly associated with stylet activities in phloem sieve elements (E1 waveform), as there was a significant increase in the rate of transmission when whiteflies performed waveform E1. The precise stylet activities - either salivation or egestion - associated with virion release, presumably from retention sites in the foregut, need further investigation.

Aphid transmission of Lettuce necrotic leaf curl virus, a member of a tentative new subgroup within the genus Torradovirus

Lettuce necrotic leaf curl virus (LNLCV) was described as the first non-tomato-infecting member of the genus Torradovirus. Until today, the virus was found only in The Netherlands in two different areas in open field crops of lettuce. In 2015, LNLCV was accepted by the ICTV as a new member of the genus Torradovirus. The tomato-infecting (TI) torradoviruses Tomato torrado virus (ToTV), Tomato marchitez virus (ToMarV) and Tomato chocolàte virus (ToChV) are transmitted by at least three whitefly species in a semi-persistent and stylet-borne manner. As LNLCV was transmitted in open fields in The Netherlands, where whiteflies are present only in low incidence, transmission studies were set up to identify the natural vector of LNLCV. Whitefly species which survive Dutch open field conditions during summer, as well as lettuce colonizing aphid species, were tested for their ability to transmit LNLCV. Lengths of acquisition and inoculation periods were chosen in accordance with the conditions for TI torradoviruses. Transmission experiments involving whiteflies were never successful. Transmission with aphids was only successful in case of the lettuce-currant aphid, Nasonovia ribisnigri. Localization of LNLCV virions in N. ribisnigri with a nested RT-PCR indicated the stylets as possible retention sites. The willow-carrot aphid Cavariella aegopodii did not transmit LNLCV in our transmission experiment but the virus could be detected in the stylets of this aphid, leaving C. aegopodii as a possible vector for LNLCV.

Green-tree retention and recovery of an old-forest specialist, the southern red-backed vole (Myodes gapperi), 20 years after harvest

Context Populations of many mammalian species are reduced as a result of clearcutting, despite the concurrent objectives of wood production and conservation of mammal diversity on cutover forest land. To help ameliorate this decline, green-tree retention (GTR) leaves large live trees after harvest to provide mature forest habitat and increase structural diversity of the regenerating stand. Aims To test the hypotheses (H) that, at 20 years after harvest, (H1) abundance, reproduction and survival of the southern red-backed vole (Myodes gapperi), as well as (H2) abundance and species diversity of the forest-floor small mammal community, would increase with the basal area (BA) and density of residual trees after harvest. Methods Small mammals were live-trapped in 2015–16 in replicated clearcut, dispersed retention, aggregated retention, patch cut and uncut forest sites in mixed forests of Douglas fir (Pseudotsuga menziesii var. glauca) and lodgepole pine (Pinus contorta Dougl. var. latifolia) in southern British Columbia, Canada. Key results Mean BA and density of overstory coniferous trees were significantly different at 20 years post-harvest, being higher on patch cut and uncut forest sites than on the clearcut and GTR sites. M. gapperi populations were significantly greater in aggregated retention and uncut forest sites than in the other sites, but demographic parameters were similar among sites, and therefore H1 was partly supported. Mean total abundance of small mammals differed significantly among sites, with the highest overall numbers occurring in the aggregated retention (16.2), clearcut (13.6) and uncut forest sites (11.9). Mean species richness and diversity were highest in the GTR and clearcut sites. Thus, H2 was not supported. Conclusions Recovery of M. gapperi in aggregated retention sites with 10m2 ha–1 BA of residual trees, as a group, occurred at 20 years post-harvest. Implications Aggregated retention of residual trees should help provide some habitat to conserve forest mammals on harvest openings, but successional development up to 20 years post-harvest may be required.