Mercury emission from coal-fired flue gases is environmentally crucial. Revealing the interaction between mercury (Hg) and functional materials is significant to controlling emission. We conducted an investigation into the adsorption mechanism of mercury species onto graphene-based Platinum (Pt) single-atom catalysts (SACs). Single-atom Pt is the active center for Hg species chemisorption, with an adsorption energy range of 0.555–3.792 eV. In addition, Hg species adsorbed preferentially at lower temperatures. Pt/3N-GN exhibits a higher adsorption ability than Pt/SV-GN. The strong interaction of Hg0 with Pt SACs contributed to atomic-orbital hybridization between them. Further analysis revealed that s, p orbitals of Hg contribute significantly to orbital hybridization with Pt SACs. Moreover, the charge decomposition analysis confirmed that s, p orbitals of Hg hybridized with d, s orbitals of Pt SACs. The net charge transfer from Hg0 to Pt/SV-GN and Pt/3N-GN are 0.059 and 0.097 e−, respectively. The higher the charge transfers, the more intense the electron and orbital interaction between Hg and the surface. Consequently, Pt/3N-GN is a highly effective catalyst for Hg adsorption.