Single-molecule Surface-enhanced Raman Spectroscopy Research Articles

Single-Molecule Surface-Enhanced Raman Spectroscopy: Challenges, Opportunities, and Future Directions.

Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) is a powerful experimental technique for label-free sensing, imaging, and chemical analysis. Although Raman spectroscopy itself is an extremely "feeble" phenomenon, the intense interaction of optical fields with metallic nanostructures in the form of plasmonic hotspots can generate Raman signals from single molecules. While what constitutes a true single-molecule signal has taken some years for the scientific community to establish, many SERS experiments, even those not specifically attempting single-molecule sensitivity, have observed fluctuation in both the SERS intensity and spectral features. In this Perspective, we discuss the impact that fluctuating SERS signals have had on the continuing advancement of SM-SERS, along with challenges and current and potential future applications.

Integrating, Validating, and Expanding Information Space in Single-Molecule Surface-Enhanced Raman Spectroscopy for Biomolecules.

Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) is an ultrahigh-resolution spectroscopic method for directly obtaining the complex vibrational mode information on individual molecules. SM-SERS offers a wide range of submolecular information on the hidden heterogeneity in its functional groups and varying structures, dynamics of conformational changes, binding and reaction kinetics, and interactions with the neighboring molecule and environment. Despite the richness in information on individual molecules and potential of SM-SERS in various detection targets, including large and complex biomolecules, several issues and practical considerations remain to be addressed, such as the requirement of long integration time, challenges in forming reliable and controllable interfaces between nanostructures and biomolecules, difficulty in determining hotspot size and shape, and most importantly, insufficient signal reproducibility and stability. Moreover, utilizing and interpreting SERS spectra is challenging, mainly because of the complexity and dynamic nature of molecular fingerprint Raman spectra, and this leads to fragmentary analysis and incomplete understanding of the spectra. In this Perspective, we discuss the current challenges and future opportunities of SM-SERS in views of system approaches by integrating molecules of interest, Raman dyes, plasmonic nanostructures, and artificial intelligence, particularly for detecting and analyzing biomolecules to realize the validation and expansion of information space in SM-SERS.

A Statistical Route to Robust SERS Quantitation Beyond the Single-Molecule Level.

Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) holds great potential to revolutionize ultratrace quantitative analysis. However, achieving quantitative SM-SERS is challenging because of strong intensity fluctuation and blinking characteristics. In this study, we reveal the relation P = 1 - e-α between the statistical SERS probability P and the microscopic average molecule number α in SERS spectra, which lays the physical foundation for a statistical route to implement SM-SERS quantitation. Utilizing SERS probability calibration, we achieve quantitative SERS analysis with batch-to-batch robustness, extremely wide detection range of concentration covering 9 orders of magnitude, and ultralow detection limit far below the single-molecule level. These results indicate the physical feasibility of robust SERS quantitation through statistical route and certainly open a new avenue for implementing SERS as a practical analysis tool in various application scenarios.

Confined-Enhanced Raman Spectroscopy.

In 1997, the discovery of single molecule-surface enhanced Raman spectroscopy (SM-SERS) rekindled broad interests owing to its ultrahigh enhancement factor up to the 1014-1015 level. However, regretfully, the advantage of SM-SERS with an ultralow detection limit has not yet been fully utilized in commercialized applications. Here, we report a strategy, which we name confined-enhanced Raman spectroscopy, in which the overall Raman properties can be remarkably improved with in situ-formed active nanoshell on the surface of silver or gold nanoparticles. The nanoshell can confine and anchor molecules onto the surface of plasmonic nanoparticles and avoid desorption from hot spots so that the "on and off" blinking effect can be eliminated. It is the first time the single-molecule detection of analytes with super sensitivity, high stability, and reproducibility based on gold nanoparticles has been realized. In addition, this strategy is suitable for SERS detection in diverse molecule systems, including biomedical diagnosis, catalytic reaction, etc.

Mapping Atomic-Scale Metal-Molecule Interactions: Salient Feature Extraction through Autoencoding of Vibrational Spectroscopy Data.

Atomic-scale features, such as step edges and adatoms, play key roles in metal-molecule interactions and are critically important in heterogeneous catalysis, molecular electronics, and sensing applications. However, the small size and often transient nature of atomic-scale structures make studying such interactions challenging. Here, by combining single-molecule surface-enhanced Raman spectroscopy with machine learning, spectra are extracted of perturbed molecules, revealing the formation dynamics of adatoms in gold and palladium metal surfaces. This provides unique insight into atomic-scale processes, allowing us to resolve where such metallic protrusions form and how they interact with nearby molecules. Our technique paves the way to tailor metal-molecule interactions on an atomic level and assists in rational heterogeneous catalyst design.

Single-molecule force manipulation facilitated multiple rereads of a drug-bound DNA at specified sites by surface-enhanced Raman spectroscopy.

Single-molecule surface-enhanced Raman spectroscopy (SERS) directly probes the vibrational characteristics of individual molecules to uncover the information inaccessible from ensemble measurements. As a surface-sensitive technique, the amplification of SERS signal occurs upon the excitation of localized surface plasmon resonance in metallic nanostructures, which can overcome optical diffraction limit for spatial detections at a nanometer scale. Complementary to this passive detection technique, optical tweezers-based single-molecule force manipulation method enables the active control of a target molecule with the restricted orientation in three dimensions. By applying a stretching force to the target molecule, it provides high-frequency feedback in sub-milliseconds with sub-piconewton force resolution and sub-nanometer distance sensitivity. Combining the active molecular control and the passive molecular vibrational measurement, we have integrated the dual-traps optical tweezers technique with the Raman spectroscopic detection platform. Under precise single-molecule force manipulations, the real-time SERS readout of the specified sites of a drug-bound DNA are recorded and re-recorded multiple times in a programmable manner. Our results showcase the promise of this correlative molecular manipulation and detection approach for real-time, label-free, and multi-dimensional characterizations of a single target biomacromolecule with both high spatial resolution and high site-specified recognition accuracy.

Single-Molecule Surface-Enhanced Raman Spectroscopy.

Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) has the potential to detect single molecules in a non-invasive, label-free manner with high-throughput. SM-SERS can detect chemical information of single molecules without statistical averaging and has wide application in chemical analysis, nanoelectronics, biochemical sensing, etc. Recently, a series of unprecedented advances have been realized in science and application by SM-SERS, which has attracted the interest of various fields. In this review, we first elucidate the key concepts of SM-SERS, including enhancement factor (EF), spectral fluctuation, and experimental evidence of single-molecule events. Next, we systematically discuss advanced implementations of SM-SERS, including substrates with ultra-high EF and reproducibility, strategies to improve the probability of molecules being localized in hotspots, and nonmetallic and hybrid substrates. Then, several examples for the application of SM-SERS are proposed, including catalysis, nanoelectronics, and sensing. Finally, we summarize the challenges and future of SM-SERS. We hope this literature review will inspire the interest of researchers in more fields.

Dynamic surface-enhanced Raman spectroscopy of DNA oligomer with a single hotspot from a gold nanoparticle dimer.

Various nanostructures for single-molecule surface-enhanced Raman spectroscopy (SERS) have been fabricated through a random aggregation process using nanoparticles that can stochastically generate multiple hotspots in the laser spot. This leads to multiple molecule detection. In this study, a single gold nanoparticle (AuNP) dimer with a single hotspot was fabricated in a laser spot controlling the position and orientation on a silicon substrate using a nanotrench-guided self-assembly. The Raman peaks of deoxyribonucleic acid (DNA) were dynamically observed, indicating a single DNA oligomer detection composed of adenine, guanine, cytosine, phosphate, and deoxyribose.

Single-molecule surface-enhanced Raman spectroscopy (SM-SERS): characteristics and analysis

Single-molecule detection (SMD), which represents the detection limit in molecular spectroscopy, has opened a new research realm in the fields of catalysis, DNA sequencing and protein analysis. Meanwhile, it provides new insights into the understanding of the molecule behaviors in a complex system. Specifically, SMD enables the quantitatively identifying of molecules accurate to single digit, provides the molecular distribution state under specific environments, and permits the in-situ observation of signal fluctuations of a single-molecule under chemical stimulus. Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) is a new subject in SMD which features specific recognition of molecules by identifying the molecular chemical bonds. It is a non-destructive technology which reflects the vibration energy and rotational energy information of molecules. This technique employs metallic nanostructures to form surface plasmon resonances (SRP) under external excitation. The SPRs generate strong local electromagnetic fields ("hot spots") around metal surface to amplify the Raman signal of probe molecules in the vicinity of plasmonic materials. The giant field enhancement endows SERS superior sensitivity in trace molecule detection down to a single-molecule level. The SM-SERS offers a facile method to track the evolution of a single molecule, revealing the reaction pathways, adsorption state and distributions, and charge exchanges between the molecule and surrounding environment. Though SM-SERS has been proposed more than 20 years ago, the acquisition of SM-SERS spectra remains a bottleneck in this field due to the disability in judging the origins of these spectra. On the other hand, the lack of knowledge in analyzing SM-SERS spectra also limits the development of SM-SERS as the origins of molecule behavior at a micro level is basically unknown to the public. This review paper covers the development of SM-SERS, the past and current methods of verifying SM-SERS including the non-statistical and the bi-analyte statistical methods, the investigation into the understanding of the fluctuation characteristics of SM-SERS, as well as the related mechanisms with regard to the unique phenomena in SM-SERS such as molecule diffusion, spectral blinking and broadening. We hope this review can help the readers to relate the characteristics in SM-SERS with the origins of molecular variations during the detection, in this way to get a clear and in-depth understanding of the roadmap for SM-SERS.

Ultrasensitive and Remote SERS Enabled by Oxygen-free Integrated Plasmonic Field Transmission

Summary Single-molecule surface enhanced Raman spectroscopy (SERS) is a sensitive technique for detecting low concentrations of adsorbed analytes on plasmonic nanosurfaces. Here, we observe that scavenging dissolved oxygen can further increase its sensitivity 109–1010 times, enabling real single-molecule detection—in other words, detecting 1 molecule in 300–500 μL aqueous solution. Experimental evidence and computational modeling support propagation of the plasmonic field throughout the entire sample volume, which enables analyte detection outside the instrument field of view. The application of readily available and inexpensive oxygen scavengers enables ultra-high analytical sensitivity using affordable instrumentation, greatly facilitating single-molecule-level research in both well-equipped and resource-limited laboratories. Furthermore, the discovery may bring fresh insights into the fundamental understanding of SERS and plasmonic field transmission in aqueous solutions.

Roadmap for single-molecule surface-enhanced Raman spectroscopy

In the near future, single-molecule surface-enhanced Raman spectroscopy (SERS) is expected to expand the family of popular analytical tools for single-molecule characterization. We provide a roadmap for achieving single molecule SERS through different enhancement strategies for diverse applications. We introduce some characteristic features related to single-molecule SERS, such as Raman enhancement factor, intensity fluctuation, and data analysis. We then review recent strategies for enhancing the Raman signal intensities of single molecules, including electromagnetic enhancement, chemical enhancement, and resonance enhancement strategies. To demonstrate the utility of single-molecule SERS in practical applications, we present several examples of its use in various fields, including catalysis, imaging, and nanoelectronics. Finally, we specify current challenges in the development of single-molecule SERS and propose corresponding solutions.

3D-Printed Peptide-Hydrogel Nanoparticle Composites for Surface-Enhanced Raman Spectroscopy Sensing

Precise control over the arrangement of plasmonic nanomaterials is critical for label-free single-molecule surface-enhanced Raman spectroscopy (SERS)-based sensing applications. SERS templates should provide high sensitivity and reproducibility and be cost-effective and easy to prepare. Additive manufacturing by extrusion-based three-dimensional (3D) printing is an emerging technique for the spatial arrangement of nanomaterials and is a method that may satisfy these SERS template requirements. In this work, we use 3D printing to produce sensitive and reproducible SERS templates using a fluorenylmethyloxycarbonyl diphenylalanine (Fmoc-FF) hydrogel loaded with silver or gold nanoparticles. The Fmoc-FF template allows the detection of low Raman cross-section molecules such as adenine at concentrations as low as 100 pM.

Charge transfer and electromagnetic enhancement processes revealed in the SERS and TERS of a CoPc thin film

Abstract Phthalocyanines are frequently used as probing molecules in the field of single-molecule surface-enhanced Raman spectroscopy (SERS) and tip-enhanced Raman spectroscopy (TERS). In this work, we systematically compare the SERS and TERS spectra from a thin cobalt phthalocyanine (CoPc) film that is deposited on a Au film. The contributions from electromagnetic (EM), resonance, and charge-transfer enhancements are discussed. Radially and azimuthally polarized vector beams are used to investigate the influences of molecular orientation and the localized surface plasmon resonance (SPR). Furthermore, two different excitation wavelengths (636 and 532 nm) are used to study the resonant excitation effect as well as the involvement of the charge-transfer processes between CoPc and the Au substrate. It is shown that the Raman peaks of CoPc are mostly enhanced by 636 nm excitation through a combination of resonant excitation, high EM enhancement, and chemical enhancement via charge transfer from the metal to the molecule. At 532 nm excitation, however, the SERS and TERS spectra are dominated by photoluminescence, which originates from a photo-induced charge-transfer process from the optically excited molecule to the metal. The contributions of the different enhancement mechanisms explain the optical contrasts seen in the TERS images of Au nanodisks covered by the CoPc film. The insight achieved in this work will help to understand the optical contrast in sub- or single-molecule TERS imaging and apply SERS or TERS in the field of photocatalysis.

High spatial resolution nanoslit SERS for single-molecule nucleobase sensing

Solid-state nanopores promise a scalable platform for single-molecule DNA analysis. Direct, real-time identification of nucleobases in DNA strands is still limited by the sensitivity and the spatial resolution of established ionic sensing strategies. Here, we study a different but promising strategy based on optical spectroscopy. We use an optically engineered elongated nanopore structure, a plasmonic nanoslit, to locally enable single-molecule surface enhanced Raman spectroscopy (SERS). Combining SERS with nanopore fluidics facilitates both the electrokinetic capture of DNA analytes and their local identification through direct Raman spectroscopic fingerprinting of four nucleobases. By studying the stochastic fluctuation process of DNA analytes that are temporarily adsorbed inside the pores, we have observed asynchronous spectroscopic behavior of different nucleobases, both individual and incorporated in DNA strands. These results provide evidences for the single-molecule sensitivity and the sub-nanometer spatial resolution of plasmonic nanoslit SERS.

Smart SERS Hot Spots: Single Molecules Can Be Positioned in a Plasmonic Nanojunction Using Host-Guest Chemistry.

Single-molecule surface-enhanced Raman spectroscopy (SERS) offers new opportunities for exploring the complex chemical and biological processes that cannot be easily probed using ensemble techniques. However, the ability to place the single molecule of interest reliably within a hot spot, to enable its analysis at the single-molecule level, remains challenging. Here we describe a novel strategy for locating and securing a single target analyte in a SERS hot spot at a plasmonic nanojunction. The "smart" hot spot was generated by employing a thiol-functionalized cucurbit[6]uril (CB[6]) as a molecular spacer linking a silver nanoparticle to a metal substrate. This approach also permits one to study molecules chemically reluctant to enter the hot spot, by conjugating them to a moiety, such as spermine, that has a high affinity for CB[6]. The hot spot can accommodate at most a few, and often only a single, analyte molecule. Bianalyte experiments revealed that one can reproducibly treat the SERS substrate such that 96% of the hot spots contain a single analyte molecule. Furthermore, by utilizing a series of molecules each consisting of spermine bound to perylene bisimide, a bright SERS molecule, with polymethylene linkers of varying lengths, the SERS intensity as a function of distance from the center of the hot spot could be measured. The SERS enhancement was found to decrease as 1 over the square of the distance from the center of the hot spot, and the single-molecule SERS cross sections were found to increase with AgNP diameter.

Digital Protocol for Chemical Analysis at Ultralow Concentrations by Surface-Enhanced Raman Scattering.

Single molecule surface-enhanced Raman spectroscopy (SM-SERS) has the potential to revolutionize quantitative analysis at ultralow concentrations (less than 1 nM). However, there are no established protocols to generalize the application of this technique in analytical chemistry. Here, a protocol for quantification at ultralow concentrations using SM-SERS is proposed. The approach aims to take advantage of the stochastic nature of the single-molecule regime to achieved lower limits of quantification (LOQ). Two emerging contaminants commonly found in aquatic environments, enrofloxacin (ENRO) and ciprofloxacin (CIPRO), were chosen as nonresonant molecular probes. The methodology involves a multivariate resolution curve fitting known as non-negative matrix factorization with alternating least-squares algorithm (NMF-ALS) to solve spectral overlaps. The key element of the quantification is to realize that, under SM-SERS conditions, the Raman intensity generated by a molecule adsorbed on a "hotspot" can be digitalized. Therefore, the number of SERS event counts (rather than SERS intensities) was shown to be proportional to the solution concentration. This allowed the determination of both ENRO and CIPRO with high accuracy and precision even at ultralow concentrations regime. The LOQ for both ENRO and CIPRO were achieved at 2.8 pM. The digital SERS protocol, suggested here, is a roadmap for the implementation of SM-SERS as a routine tool for quantification at ultralow concentrations.

Single-molecule surface-enhanced Raman spectroscopy of 4,4′-bipyridine on a prefabricated substrate with directionally arrayed gold nanoparticle dimers

In this study, single-molecule detection on a prefabricated substrate through surface-enhanced Raman spectroscopy (SERS) with 4,4′-bipyridine molecules was achieved. The use of a substrate with directionally arrayed gold nanoparticle dimers was proposed for the single-molecule detection and identification of a wide range of bio/chemical molecules. Around 50 Raman measurements and statistical analyses were performed to demonstrate a single-molecule SERS. At 10−11 M, the distribution was fitted by three Gaussian curves, whereas the distribution of Raman intensities was fitted by one Gaussian curve at 10−5 M. The probability of molecule detection is consistent with the Poisson distribution. This result indicates the possibility of detecting 0, 1, and 2 molecules. Thus, we confirmed that the developed substrates achieved single-molecule SERS detection and identification.

Single Molecule Electrochemistry: Impact of Surface Site Heterogeneity

Probing the electrochemistry of single molecules is a direct pathway toward a microscopic understanding of a variety of electron transfer processes related to energy science, such as electrocatalysis and solar fuel cells. In this context, Zaleski et al. recently studied the single electron transfer reaction of the dye molecule rhodamine-6G (R6G) by electrochemical single molecule surface-enhanced Raman spectroscopy (EC-SMSERS) (J. Phys. Chem. C 2015, 119, 28226−28234). In that work, the reductions of the dye molecule R6G were not only observed in the same potential range as in the ensemble surface cyclic voltammogram but also seen under some less negative potentials. Aiming to understand and explain this experiment theoretically, we relate the binding energy of R6G+ adsorbed on a silver nanoparticle (AgNP) to its reduction potential and further use periodic density functional theory to calculate this adsorption energy at different local surface sites. Well-defined crystal facets and defective surfaces, ar...

Toward Monitoring Electrochemical Reactions with Dual-Wavelength SERS: Characterization of Rhodamine 6G (R6G) Neutral Radical Species and Covalent Tethering of R6G to Silver Nanoparticles

The combination of electrochemistry (EC) and single molecule surface-enhanced Raman spectroscopy (SMSERS) has recently proven to be a sensitive method to investigate electron transfer (ET) reactions at the single molecule level. SMSERS can both detect single redox-active molecules and potentially monitor both the oxidized (O) and reduced (R) forms of a one-electron ET reaction in a single experiment. Herein, we report progress toward complete monitoring of single ET reactions with EC-SMSERS. We first obtained the solution phase resonance Raman (RR) spectrum of the Rhodamine 6G (R6G) neutral radical (R) with thin-layer resonance Raman spectroelectrochemistry (EC-RRS). The experimental spectrum was then correlated with the spectrum calculated by density functional theory (DFT). We then describe our approach to address the problem of adsorbate (R) loss caused either by desorption or reaction of the neutral radical with trace water or oxygen during the EC-SMSERS experiment. We have investigated a covalent cro...

Mathematical Model for Biomolecular Quantification Using Large-Area Surface-Enhanced Raman Spectroscopy Mapping.

Surface-enhanced Raman spectroscopy (SERS) based on nanostructured platforms is a promising technique for quantitative and highly sensitive detection of biomolecules in the field of analytical biochemistry. Here, we report a mathematical model to predict experimental SERS signal (or hotspot) intensity distributions of target molecules on receptor-functionalized nanopillar substrates for biomolecular quantification. We demonstrate that by utilizing only a small set of empirically determined parameters, our general theoretical framework agrees with the experimental data particularly well in the picomolar concentration regimes. This developed model may be generally used for biomolecular quantification using Raman mapping on SERS substrates with planar geometries, in which the hotspots are approximated as electromagnetic enhancement fields generated by closely spaced dimers. Lastly, we also show that the detection limit of a specific target molecule, TAMRA-labeled vasopressin, approaches the single molecule level, thus opening up an exciting new chapter in the field of SERS quantification.