Similar Temporal Dynamics Research Articles

Bridging between litterbags and whole-ecosystem experiments: a new approach for studying lake sediments

<p>Nearshore sediments have a major influence over the functioning of aquatic ecosystems, but predicting their response to future environmental change has proven difficult. Previous manipulative experiments have faced challenges controlling environmental conditions, replicating sediment mixing dynamics, and extrapolating across spatial scales. Here we describe a new approach to manipulate lake sediments that overcomes previous concerns about reproducibility and environment controls, whilst also bridging the gap between smaller microcosm or litterbag experiments and whole-ecosystem manipulations. Our approach involves submerging moderate-sized (~15 L) artificial substrates that have been standardised to mimic natural sediments within the littoral zones of lakes. We show that this approach can accurately mirror the absolute dissolved organic carbon concentrations and pH of pore water, and to a lesser degree inorganic carbon concentrations, from natural lake sediments with similar organic matter profiles. On a relative basis, all measured variables had similar temporal dynamics between artificial and adjacent natural sediments. Late-summer zooplankton biomass also did not differ between natural and artificial sediments. By offering a more realistic way to manipulate freshwater sediments than previously possible, our approach can improve predictions of lake ecosystems in a changing world.<br /><br /><img src="/public/site/images/ttaccini/88x31.png" alt="" /> <br />This work is licensed under a <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">Creative Commons Attribution 4.0 International</a>.</p>

First and second order transformational apparent motion have similar temporal dynamics

First and second order transformational apparent motion have similar temporal dynamics

How do microbial communities in top- and subsoil respond to root litter addition under field conditions?

Contrasting microbial community composition and activity at different soil depths may affect root litter decomposition. These effects have up to now been investigated mainly in laboratory studies, which may not be able to take into account complex in situ conditions. Our study aimed to analyze the composition and activity of microbial communities after addition of 13C labeled wheat root litter to a loamy soil under grassland at 30, 60 and 90 cm depths, during a three-year field experiment. We investigated the dynamics of bacterial and fungal abundances and community structures by DNA genotyping and pyrosequencing of 16S and 18S rDNAs. The genetic structures of bacterial and fungal communities were evaluated by automated ribosomal intergenetic spacer analysis. The functions of these communities were analysed by determination of extracellular enzyme activities and viable microbial communities involved in 13C labeled organic matter decomposition studied by 13C PLFAs.The abundance of fungal and bacterial communities (16S and 18S rDNAs and PLFA) and the potential activities of enzymes involved in the C- and N-cycles were significantly higher at the top 30 cm compared with deeper soil throughout the experiment. Both were stimulated by fresh litter input. A trend to decreasing bacterial and fungal richness was noted after root litter addition at 30 cm, while richness of bacteria at 90 cm and those of fungi at 60 and 90 cm increased. Moreover, root litter addition caused a reduction of the Shannon Weaver Diversity index and a shift in microbial community structure at all three depths, which was more pronounced for bacteria at 30 and 60 cm and for fungi at 90 cm. The changes during litter degradation resulted in similar dynamics of most enzyme activities at all depths. Chitinase activity was enhanced after 29 months compared to initial conditions indicating the availability of high amounts of microbial detritus. The degrading microbial community as assessed by 13C PLFA showed similar temporal dynamics at all three depths. Fungal contribution to this community decreased during later stages of litter degradation, while the contribution of Gram+ bacteria increased. We conclude that litter addition led to convergence of microbial communities of top- and subsoil through stimulation of copiotrophic populations. Soil microbial community structures are thus connected with the amount of fresh litter input. Enzyme activities and 13C PLFA reflect to some extent the changes occurring during degradation, i.e. exhaustion of fresh plant material and accumulation of detritus.

Dynamics of the microbial community and Fe(III)-reducing and dechlorinating microorganisms in response to pentachlorophenol transformation in paddy soil

Soil microorganisms play crucial roles in the fates of pollutants, and understanding the behaviour of these microorganisms is critical for the bioremediation of PCP-contaminated soil. However, shifts remain unclear in the community structure and Fe(III)-reducing and dechlorinating microorganisms during PCP transformation processes, especially during the stages from the lag to the dechlorination phase and from the dechlorination to the stationary phase. Here, a set of lab-scale experiments was performed to investigate the microbial community dynamics accompanying PCP transformation in paddy soil. 19μM of PCP was biotransformed completely in 10days for all treatments. T-RFLP analysis of the microbial community confirmed that Veillonellaceae and Clostridium sensu stricto were the dominant groups during PCP transformation, and the structures of the microbial communities changed due to the degree of biotransformation and the addition of lactate and AQDS. However, similar temporal dynamics of the microbial communities were obtained among all treatments. Furthermore, as revealed by quantitative PCR, the dynamics of Fe(III)-reducing and dechlorinating microorganisms, including Geobacter sp., Shewanella sp., and Dehalobacter sp., were consistent with the transformation kinetics of PCP, suggesting the critical roles played by these microorganisms in PCP transformation. These findings are valuable for making predictions of and proposing methods for the microbial detoxification of residual organochlorine pesticides in paddy soil.

Silver Nanoparticles Affect Functional Bioenergetic Traits in the Invasive Red Sea Mussel Brachidontes pharaonis.

We investigated the functional trait responses to 5 nm metallic silver nanoparticle (AgNPs) exposure in the Lessepsian-entry bivalve B. pharaonis. Respiration rate (oxygen consumption), heartbeat rate, and absorption efficiency were evaluated across an 8-day exposure period in mesocosmal conditions. Basal reference values from not-exposed specimens were statistically compared with those obtained from animals treated with three sublethal nanoparticle concentrations (2 μg L−1, 20 μg L−1, and 40 μg L−1). Our data showed statistically significant effects on the average respiration rate of B. pharaonis. Moreover, complex nonlinear dynamics were observed as a function of the concentration level and time. Heartbeat rates largely increased with no acclimation in animals exposed to the two highest levels with similar temporal dynamics. Eventually, a decreasing trend for absorption efficiency might indicate energetic constraints. In general, these data support the possible impact of engineered nanomaterials in marine environments and support the relevance of functional trait assessment in present and future ecotoxicological studies.

Responses of two semiarid conifer tree species to reduced precipitation and warming reveal new perspectives for stomatal regulation.

Relatively anisohydric species are predicted to be more predisposed to hydraulic failure than relatively isohydric species, as they operate with narrower hydraulic safety margins. We subjected co-occurring anisohydric Juniperus monosperma and isohydric Pinus edulis trees to warming, reduced precipitation, or both, and measured their gas exchange and hydraulic responses. We found that reductions in stomatal conductance and assimilation by heat and drought were more frequent during relatively moist periods, but these effects were not exacerbated in the combined heat and drought treatment. Counter to expectations, both species exhibited similar gs temporal dynamics in response to drought. Further, whereas P. edulis exhibited chronic embolism, J. monosperma showed very little embolism due to its conservative stomatal regulation and maintenance of xylem water potential above the embolism entry point. This tight stomatal control and low levels of embolism experienced by juniper refuted the notion that very low water potentials during drought are associated with loose stomatal control and with the hypothesis that anisohydric species are more prone to hydraulic failure than isohydric species. Because direct association of stomatal behaviour with embolism resistance can be misleading, we advocate consideration of stomatal behaviour relative to embolism resistance for classifying species drought response strategies.

Impact of seaweed beachings on dynamics of δ15N isotopic signatures in marine macroalgae

A fine-scale survey of δ15N, δ13C, tissue-N in seaweeds was conducted using samples from 17 sampling points at two sites (Grandcamp-Maisy (GM), Courseulles/Mer (COU)) along the French coast of the English Channel in 2012 and 2013. Partial triadic analysis was performed on the parameter data sets and revealed the functioning of three areas: one estuary (EstA) and two rocky areas (GM∗, COU∗). In contrast to oceanic and anthropogenic reference points similar temporal dynamics characterized δ15N signatures and N contents at GM∗ and COU∗. Nutrient dynamics were similar: the N-concentrations in seawater originated from the River Seine and local coastal rivers while P-concentrations mainly from these local rivers. δ15N at GM∗ were linked to turbidity suggesting inputs of autochthonous organic matter from large-scale summer seaweed beachings made up of a mixture of Rhodophyta, Phaeophyta and Chlorophyta species. This study highlights the coupling between seaweed beachings and nitrogen sources of intertidal macroalgae.

Comparison of the temporal and taxonomic patterns of ichthyofauna captured with a fyke net in two sheltered environments in southern Brazil

1024x768 We use two taxonomic indexes to assess the variability of the taxonomic structure and diversity of the ichthyofauna of two low-energy environments in southern Brazil and to compare the temporal patterns of these two ichthyofaunas. Sampling was conducted in the infralittoral zones of Maciel (Paranagua Bay, PR) and Indio Beach (Norte Bay of Florianopolis, SC). A fyke net was set up at a depth of 0.5 to 2.0 m and left in place for 48 h for each of the samplings. A total of two diurnal and two nocturnal samplings were conducted monthly per one year. The ichthyofaunas at the two sites exhibited similar temporal dynamics, with their abundance and biomass presenting a tendency to increase with increasing temperature during the spring and summer months. A total of 113 species were captured, of which 47 were present at both sites. Harengula clupeola , Sphoeroides testudineus and S. greeleyi were especially abundant at both sites. The co-occurring species displayed similar day and night occupancy trends. In all seasons, the obtained values for the average taxonomic distinctness and variation in taxonomic distinctness were within the confidence intervals. The seasonal reproduction and recruitment patterns led to slight changes in taxonomic distinctness during the year, which were within the expected intervals. Normal 0 false false false EN-CA X-NONE X-NONE /* Style Definitions */ table.MsoNormalTable {mso-style-name:Tabela normal; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:Calibri,sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Times New Roman; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:Times New Roman; mso-bidi-theme-font:minor-bidi;}

Identification of brain networks using time-varying spatial constraints of neural activity reconstruction.

Electroencephalographic (EEG) data give a direct non-invasive measurement of neural brain activity. Nevertheless, the common assumption about EEG stationarity (time-invariant process) is a strong limitation for understanding real behavior of underlying neural networks. Here, we propose an approach for finding networks of brain regions connected by functional associations (functional connectivity) that vary along the time. To this end, we compute a set of a priori spatial dictionaries that represent brain areas with similar temporal stochastic dynamics, and then, we model relationship between areas as a time-varying process. We test our approach in both simulated and real EEG data where results show that inherent interpretability provided by the time-varying process can be useful to describe underlying neural networks.

Effect of short chain fatty acids on the expression of free fatty acid receptor 2 (Ffar2), Ffar3 and early-stage adipogenesis.

Adipose tissue has a major influence on insulin sensitivity. Stimulation of free fatty acid receptor 2 (FFAR2) has been proposed to influence adipocyte differentiation. We hypothesised that exposing preadipocytes to short chain fatty acids would induce earlier expression of nuclear receptors that co-ordinate adipogenesis, triglyceride accumulation and leptin secretion. 3T3-L1 preadipocytes were differentiated in the presence of 1 μM acetate, 0.1–10 μM propionate or vehicle control. In experiment 1, expression of Ffar2 and nuclear receptor mRNA was measured by quantitative PCR over 48 h following onset of differentiation. In experiment 2, extracellular leptin concentration and intracellular triglyceride content were measured at days 0, 2, 4, 6, 8 and 10 following the onset of differentiation. Control cells exhibited similar temporal dynamics of gene expression, triglyceride accumulation and leptin secretion as reported previously. We were unable to detect expression of Ffar3 mRNA at any stage of differentiation. Consistent with a lack of Ffar2 expression in the first 24 h of differentiation, acetate and propionate had no significant effect on nuclear receptor expression. Furthermore, acetate or propionate treatment did not alter leptin concentration or triglyceride content. In conclusion, we observed no significant effect of propionate or acetate on adipogenesis in 3T3-L1 cells using validated quantitative techniques.

The effect of nitrification inhibitors on nitrous oxide emissions from cattle urine depositions to grassland under summer conditions in the UK

Nitrous oxide (N2O) has become the prime ozone depleting atmospheric emission and the third most important anthropogenic greenhouse gas, with a global warming potential approximately 300 times higher than CO2. Nitrification and denitrification are processes responsible for N2O emission from the soil after nitrogen input. The application of a nitrification inhibitor can reduce N2O emissions from these processes. The objective of this study was to assess the effect of two different nitrification inhibitors (dicyandiamide (DCD) and a commercial formulation containing two pyrazole derivatives (PD), 1H-1,2,4-triazole and 3-methylpyrazole) on N2O emissions from cattle urine applications for summer grazing conditions in the UK. Experiments were conducted under controlled conditions in a laboratory incubator and under field conditions on a grassland soil. The N2O emissions showed similar temporal dynamics in both experiments. DCD concentration in the soil showed an exponential degradation during the experiment, with a half-life of the order of only 10d (air temperature c. 15°C). DCD (10kgha−1) and PD at the highest application rate (3.76kgha−1) reduced N2O emissions by 13% and 29% in the incubation experiment and by 33% and 6% in the field experiment, respectively, although these reductions were not statistically significant (P>0.05). Under UK summer grazing conditions, these nitrification inhibitors appear to be less effective at reducing N2O emissions than reported for other conditions elsewhere in the literature, presumably due to the higher soil temperature.

Temporal dominance of sensory and emotional sensations for chocolate

Mapping food-evoked emotions in addition to sensory profiling is topical. For sensory profiling, Temporal Dominance of Sensations (TDS) method focus on temporal evolution of sensory attributes over time. It seems plausible that food-evoked emotions show similar temporal dynamics that could be related to sensory dynamics. This study assessed temporal dynamics of sensory and emotional attributes during chocolate tasting. We used the TDS method for dynamic information on a list of 10 sensory attributes. Comparably, Temporal Dominance of Emotions (TDE) was assessed, by replacing the sensory list with emotional attributes. Sixty-two participants assessed TDS and TDE for five samples of different flavoured dark chocolate (i.e. Blueberry, Orange, Mint, and plain dark with 70% vs. 90% cacao). Multivariate comparisons (Hotelling- T 2 -test) using dominance durations showed significant differences between products based on sensory ( p 0.05 ) and emotional attributes ( p 0.05 ). TDS band plots revealed products to differ based on their dominant sensory attributes, with different attributes peaking at different time moments for various flavours. In line with our expectation, TDE band plots showed that products also differed in the temporal distribution of dominant emotional attributes. Comparison of TDS and TDE band plots suggested that, compared to the plain chocolates, the flavoured chocolates were characterized by more complex sensory profiles with stronger dynamics over time. Interestingly, this was associated with more positive/active emotional attributes gaining dominance over time, e.g. ‘interested’, ‘energetic’, and ‘happy’. These findings suggest TDE to be a promising new venue in characterising food-evoked emotions in relation to sensory profiling.

Deterioration of Gait and Balance over Time: The Effects of Age-Related White Matter Change - The LADIS Study

Background: Cross-sectional studies have shown an association between the severity of age-related white matter change (ARWMC) and lower body motor function. However, the association between prevalent ARWMC and incident deterioration of balance and gait remains insufficiently investigated. This study investigates if the degree of prevalent ARWMC has a differential effect on lower body motor function as it changes over time, hypothesizing that individuals with more severe baseline white matter pathology experience greater clinical deterioration independent of potential confounders. This is of clinical relevance: given the increasing use of neuroimaging, incidental white matter pathology is common; being able to delineate natural trajectories of balance and gait function given ARWMC may improve patient advice and help optimize allocation of care. Methods: 639 non-disabled elderly individuals with prevalent ARWMC (grading of severity of ARWMC using the Fazekas scale) were followed up yearly for 3 years, as part of the Leukoaraiosis and Disability Study. The primary outcome variable, reflecting the temporal course of gait and balance function, was the change of scores on the Short Physical Performance Battery (SPPB) over time versus the severity of ARWMC. We used linear mixed modelling to analyse change over time. Explorative analysis was carried out investigating the effect of age on potential deterioration of gait and balance function. We used propensity scores to adjust for multiple confounders that affect both the exposure (i.e. ARWMC) and outcome. Results: Subjects' lower body motor function deteriorated by 2.6% per year. However, after adjustment for baseline motor impairment and potential confounders, only subjects with moderate [-0.22 points per year on the SPPB (equals -2.3%); 95% CI -0.35 to -0.09, p < 0.001] or severe [-0.46 points per year (equals -4.7%); 95% CI -0.63 to -0.28, p < 0.0001] ARWMC show a loss of function. Age shows differential effects: relatively younger elderly subjects have similar temporal dynamics in SPPB change independent of their individual degree of ARWMC severity; however, subjects with severe ARWMC and who are older than 75.9 years deteriorate significantly more rapidly than their counterparts with only mild or moderate white matter pathology. Conclusion: Only moderate and severe ARWMC is independently associated - on average - with a deterioration of gait and balance. Albeit the possibility of unmeasured confounding and other methodological constraints, there is nonetheless evidence of large interindividual variability: some subjects with moderate or severe ARWMC stay stable over time or even show improvement. Furthermore, there is explorative analysis showing that younger elderly subjects may be able to better compensate even severe ARWMC. These individuals' gait and balance function stays relatively stable over time, whereas their older counterparts deteriorate significantly. This may point towards a threshold effect given ARWMC.

Emotion regulation in social anxiety disorder: behavioral and neural responses to three socio-emotional tasks

BackgroundSocial anxiety disorder (SAD) is thought to involve deficits in emotion regulation, and more specifically, deficits in cognitive reappraisal. However, evidence for such deficits is mixed.MethodsUsing functional magnetic resonance imaging (fMRI) of blood oxygen-level dependent (BOLD) signal, we examined reappraisal-related behavioral and neural responses in 27 participants with generalized SAD and 27 healthy controls (HC) during three socio-emotional tasks: (1) looming harsh faces (Faces); (2) videotaped actors delivering social criticism (Criticism); and (3) written autobiographical negative self-beliefs (Beliefs).ResultsBehaviorally, compared to HC, participants with SAD had lesser reappraisal-related reduction in negative emotion in the Beliefs task. Neurally, compared to HC, participants with SAD had lesser BOLD responses in reappraisal-related brain regions when reappraising faces, in visual and attention related regions when reappraising criticism, and in the left superior temporal gyrus when reappraising beliefs. Examination of the temporal dynamics of BOLD responses revealed late reappraisal-related increased responses in HC, compared to SAD. In addition, the dorsomedial prefrontal cortex (DMPFC), which showed reappraisal-related increased activity in both groups, had similar temporal dynamics in SAD and HC during the Faces and Criticism tasks, but greater late response increases in HC, compared to SAD, during the Beliefs task. Reappraisal-related greater late DMPFC responses were associated with greater percent reduction in negative emotion ratings in SAD patients.ConclusionsThese results suggest a dysfunction of cognitive reappraisal in SAD patients, with overall reduced late brain responses in prefrontal regions, particularly when reappraising faces. Decreased late activity in the DMPFC might be associated with deficient reappraisal and greater negative reactivity.Trial registrationClinicalTrials.gov identifier: NCT00380731

Expanding MISR LAI Products to High Temporal Resolution With MODIS Observations

The Multi-Angle Imaging Spectroradiometer (MISR) is a powerful sensor for leaf area index (LAI) mapping with its simultaneous multi-angle observations. However, the LAI product derived from MISR observations has low temporal resolution, which is unsatisfactory for many applications. This paper presents an algorithm that expands the MISR LAI product to high temporal resolution with the aid of Moderate Resolution Imaging Spectroradiometer (MODIS) data. The algorithm establishes relationships between the MISR LAI and the MODIS red/near-infrared band ratio (simple ratio (SR)) pixel by pixel using coincident data of these two sensors for the past nine years. Using these pixel-based SR-LAI relationships, a new LAI product with the merits of the original MISR product and high temporal resolution is obtained from MODIS surface reflectance. The expanded LAI series was compared with the original MISR and MODIS LAI products, as well as field LAI measurements made at the Baohe and Maoershan forest sites and the Hulunbeier grassland site, to assess the algorithm's performance. The results show that the temporal coverage of the MISR LAI improved from 15.5% to 65.2% in an 8-day composite, and the mean root-mean-square error is 0.74 for the vegetated pixels. This LAI product has similar temporal consistency and seasonal dynamics to the existing MODIS LAI product generated from the main algorithm, but is more robust against the low quality of reflectance inputs. The expanded LAI product differs with field measurements by about 11.5%, with agreement to field observations at all three sites within an accuracy of 0.8 LAI.

A photosynthetic rotating annular bioreactor (Taylor–Couette type flow) for phototrophic biofilm cultures

In their natural environment, the structure and functioning of microbial communities from river phototrophic biofilms are driven by biotic and abiotic factors. An understanding of the mechanisms that mediate the community structure, its dynamics and the biological succession processes during phototrophic biofilm development can be gained using laboratory-scale systems operating with controlled parameters. For this purpose, we present the design and description of a new prototype of a rotating annular bioreactor (RAB) (Taylor–Couette type flow, liquid working volume of 5.04 L) specifically adapted for the cultivation and investigation of phototrophic biofilms. The innovation lies in the presence of a modular source of light inside of the system, with the biofilm colonization and development taking place on the stationary outer cylinder (onto 32 removable polyethylene plates). The biofilm cultures were investigated under controlled turbulent flowing conditions and nutrients were provided using a synthetic medium (tap water supplemented with nitrate, phosphate and silica) to favour the biofilm growth. The hydrodynamic features of the water flow were characterized using a tracer method, showing behaviour corresponding to a completely mixed reactor. Shear stress forces on the surface of plates were also quantified by computer simulations and correlated with the rotational speed of the inner cylinder. Two phototrophic biofilm development experiments were performed for periods of 6.7 and 7 weeks with different inoculation procedures and illumination intensities. For both experiments, biofilm biomasses exhibited linear growth kinetics and produced 4.2 and 2.4 mg cm −² of ash-free dry matter. Algal and bacterial community structures were assessed by microscopy and T-RFLP, respectively, and the two experiments were different but revealed similar temporal dynamics. Our study confirmed the performance and multipurpose nature of such an innovative photosynthetic bioreactor for phototrophic biofilm investigations.

Large‐scale iTRAQ‐based quantification of phosphorylation changes during vasopressin signaling

Protein phosphorylation plays a critical role in the signaling pathways regulating water transport in kidney collecting duct. A central mediator in this process is the hormone arginine vasopressin (AVP), which regulates phosphorylation of the water channel aquaporin-2 (AQP2), although the exact mechanisms are not fully understood. Here we utilized a multiplexed, isotopic label-based quantitative phosphoproteomic approach in order to explore the temporal dynamics of phosphorylation events triggered by vasopressin across multiple timepoints. Briefly, rat inner medullary collecting duct (IMCD) samples were incubated in the presence or absence of 1nM AVP for 0.5, 2, 5, and 15 min (n=3). Each sample was labeled with a different iTRAQ reagent, mixed and processed for shotgun phosphoproteomic analysis. Of the 12,533 phosphopeptides identified, 3,298 were found in at least 2 out of 3 time courses and had quantifiable iTRAQ ratios. Clustering this subset of peptides using a mapping-based temporal pattern mining algorithm identified 30 clusters of phosphopeptides with distinct temporal profiles. Phosphopeptides for Rap1 GTPase activating protein, kinesin 13B, Bcl-2-related ovarian killer (Bok), Pigb, Lrrfip1, and Tbc1d1 were increased in abundance within 0.5 min and displayed similar temporal dynamics to those of AQP2 peptides phosphorylated at residue Ser-256, a site which is critical for AQP2 trafficking. Phosphopeptides for two pore calcium channel protein 1, septin 9, EGFR pathway substrate 8-like protein 1, Ahnak, and actin binding LIM protein 1 were decreased in abundance within 5–15 min of AVP exposure. These data provide the foundation for development of a network model for vasopressin signaling.

Water Quality and Herbivory Interactively Drive Coral-Reef Recovery Patterns in American Samoa

BackgroundCompared with a wealth of information regarding coral-reef recovery patterns following major disturbances, less insight exists to explain the cause(s) of spatial variation in the recovery process.Methodology/Principal FindingsThis study quantifies the influence of herbivory and water quality upon coral reef assemblages through space and time in Tutuila, American Samoa, a Pacific high island. Widespread declines in dominant corals (Acropora and Montipora) resulted from cyclone Heta at the end of 2003, shortly after the study began. Four sites that initially had similar coral reef assemblages but differential temporal dynamics four years following the disturbance event were classified by standardized measures of ‘recovery status’, defined by rates of change in ecological measures that are known to be sensitive to localized stressors. Status was best predicted, interactively, by water quality and herbivory. Expanding upon temporal trends, this study examined if similar dependencies existed through space; building multiple regression models to identify linkages between similar status measures and local stressors for 17 localities around Tutuila. The results highlighted consistent, interactive interdependencies for coral reef assemblages residing upon two unique geological reef types. Finally, the predictive regression models produced at the island scale were graphically interpreted with respect to hypothesized site-specific recovery thresholds.Conclusions/SignificanceCumulatively, our study purports that moving away from describing relatively well-known patterns behind recovery, and focusing upon understanding causes, improves our foundation to predict future ecological dynamics, and thus improves coral reef management.

3D finite compartment modeling of formation and healing of bruises may identify methods for age determination of bruises

Simulating the spatial and temporal behavior of bruises may identify methods that allow accurate age determination of bruises to assess child abuse. We developed a numerical 3D model to simulate the spatial kinetics of hemoglobin and bilirubin during the formation and healing of bruises. Using this model, we studied how skin thickness, bruise diameter and diffusivities affect the formation and healing of circular symmetric bruises and compared a simulated bruise with a natural inhomogeneous bruise. Healing is faster for smaller bruises in thinner and less dense skin. The simulated and natural bruises showed similar spatial and temporal dynamics. The different spatio-temporal dynamics of hemoglobin and bilirubin allows age determination of model bruises. Combining our model predictions with individual natural bruises may allow optimizing our model parameters. It may particularly identify methods for more accurate age determination than currently possible to aid the assessment of child abuse.

Bacterial Community Dynamics during Bioremediation of Diesel Oil-Contaminated Antarctic Soil

The effect of nutrient and inocula amendment in a bioremediation field trial using a nutrient-poor Antarctic soil chronically contaminated with hydrocarbons was tested. The analysis of the effects that the treatments caused in bacterial numbers and hydrocarbon removal was combined with the elucidation of the changes occurring on the bacterial community, by 16S rDNA-based terminal restriction fragment length polymorphism (T-RFLP) typing, and the detection of some of the genes involved in the catabolism of hydrocarbons. All treatments caused a significant increase in the number of bacteria able to grow on hydrocarbons and a significant decrease in the soil hydrocarbon content, as compared to the control. However, there were no significant differences between treatments. Comparison of the soil T-RFLP profiles indicated that there were changes in the structure and composition of bacterial communities during the bioremediation trial, although the communities in treated plots were highly similar irrespective of the treatment applied, and they had a similar temporal dynamics. These results showed that nutrient addition was the main factor contributing to the outcome of the bioremediation experiment. This was supported by the lack of evidence of the establishment of inoculated consortia in soils, since their characteristic electrophoretic peaks were only detectable in soil profiles at the beginning of the experiment. Genetic potential for naphthalene degradation, evidenced by detection of nahAc gene, was observed in all soil plots including the control. In treated plots, an increase in the detection of catechol degradation genes (nahH and catA) and in a key gene of denitrification (nosZ) was observed as well. These results indicate that treatments favored the degradation of aromatic hydrocarbons and probably stimulated denitrification, at least transiently. This mesocosm study shows that recovery of chronically contaminated Antarctic soils can be successfully accelerated using biostimulation with nutrients, and that this causes a change in the indigenous bacterial communities and in the genetic potential for hydrocarbon degradation.