The Late Cretaceous epoch was characterized by extreme greenhouse climates and widespread glaucony formation in shallow marine settings. However, in the Danubian Cretaceous Basin (DCB, Bavaria, SE-Germany), contemporaneous shallow marine deposition of glauconitic sandstones of the Regensburg Formation in the eastern and the glaucony-free Neuburg Siliceous Earth deposits of the Wellheim Formation in the western parts of the basin during Cenomanian–early Turonian times is puzzling. An integrated approach of sedimentology, stratigraphy, mineralogy and geochemistry reveals that the striking lithological and mineralogical differences can be attributed to the geological structure of the hinterland and the nature of element input: in the eastern DCB, deeply chemically weathered granites and gneisses of the Bohemian Massif were leached due to the warm climate and high precipitation rates as indicated by high values of the modified Chemical Index of Alteration (CIXrev). Elements crucial for glaucony formation (K, Fe, Si, Al) were amply supplied by rivers, fueling a shallow marine glaucony factory. Slightly reducing conditions and a temporally increased primary productivity further promoted favorable conditions for geologically fast shallow water glaucony authigenesis. In the western DCB, in contrast, a hinterland consisting of karstified Upper Jurassic carbonates devoid of essential elements for glaucony formation and a lack of significant fluvial input inhibited shallow marine glaucony formation. Furthermore, we suggest that the depositional environment of the Neuburg Siliceous Earth was affected by submarine discharge of silica-rich groundwater resulting in intense early diagenetic silicification. Additionally, our geochemical data provide the first evidence of a trace metal drawdown during Oceanic Anoxic Event 2 (approx. 94 Ma) in shallow water/coastal settings in Germany, as shown in very low V/Al, Ni/Al, Cu/Al and As/Al ratios, much lower than the average shale and upper continental crust.