Significant Effect Of Genotype Research Articles

Incidence of Alzheimer's Disease in Men with Late-Life Hypertension Is Ameliorated by FOXO3 Longevity Genotype.

It is well established that mid-life hypertension increases risk of dementia, whereas the association of late-life hypertension with dementia is unclear. To determine whether FOXO3 longevity-associated genotype influences the association between late-life hypertension and incident dementia. Subjects were 2,688 American men of Japanese ancestry (baseline age: 77.0±4.1 years, range 71-93 years) from the Kuakini Honolulu Heart Program. Status was known for FOXO3 rs2802292 genotype, hypertension, and diagnosis of incident dementia to 2012. Association of FOXO3 genotype with late-life hypertension and incident dementia, vascular dementia (VaD) and Alzheimer's disease (AD) was assessed using Cox proportional hazards models. During 21 years of follow-up, 725 men were diagnosed with all-cause dementia, 513 with AD, and 104 with VaD. A multivariable Cox model, adjusting for age, education, APOEɛ4, and cardiovascular risk factors, showed late-life hypertension increased VaD risk only (HR = 1.71, 95% CI = 1.08-2.71, p = 0.022). We found no significant protective effect of FOXO3 longevity genotype on any type of dementia at the population level. However, in a full Cox model adjusting for age, education, APOEɛ4, and other cardiovascular risk factors, there was a significant interaction effect of late-life hypertension and FOXO3 longevity genotype on incident AD (β= -0.52, p = 0.0061). In men with FOXO3 rs2802292 longevity genotype (TG/GG), late-life hypertension showed protection against AD (HR = 0.72; 95% CI = 0.55-0.95, p = 0.021). The non-longevity genotype (TT) (HR = 1.16; 95% CI = 0.90-1.51, p = 0.25) had no protective effect. This longitudinal study found late-life hypertension was associated with lower incident AD in subjects with FOXO3 genotype.

Interaction between haptoglobin genotype and glycemic variability on diabetic macroangiopathy: a population-based cross-sectional study.

Haptoglobin (Hp) is a hemoglobin-binding protein that functions as an antioxidant in human plasma. It is reported that glycemic variability (GV) plays a key role in diabetes-related complications associated with impaired glucose metabolism and oxidative stress. Here we aim to investigate whether the effect of GV on diabetic macroangiopathy depends on Hp genotype in type 2 diabetes. A number of 860 Chinese patients with type 2 diabetes was genotyped and assigned to two Hp subgroups (Hp 2-2 and Hp 1 carriers). Glycemic variability (GV) was assessed by using a retrospective continuous glucose monitoring system for three consecutive days, and it was measured using the glucose coefficient of variation (%CV), which is calculated as the ratio of glucose standard deviation to glucose mean. Clinical features, history of cardiac surgery, and vascular imaging tests were utilized to diagnose macroangiopathy. We evaluated the interaction between Hp genotypes and %CV on diabetic macroangiopathy. Furthermore, serum concentration of 8-hydroxy-2'-deoxyguanosine (8-OHdG) was measured using an enzyme-linked immunosorbent assay as a biomarker of oxidative stress. Serum 8-OHdG levels were positively correlated with %CV in Hp 1 carriers (r = 0.117; p = 0.021). Patients in the highest %CV tertile were associated with a higher prevalence of diabetic macroangiopathy than those in the lowest %CV tertile in Hp 1 carriers (OR = 2.461 [95% CI, 1.183-5.121], p = 0.016), but not in those with Hp 2-2 genotype (OR = 0.540 [95% CI, 0.245-1.191], p = 0.127). A significant interactive effect of Hp genotypes and %CV on diabetic macroangiopathy was found (p interaction = 0.008). Hp genotype modifies the effect of GV on diabetic macroangiopathy among Chinese patients with type 2 diabetes.

Effects of endosperm type and storage length of whole-plant corn silage on nitrogen fraction, fermentation products, zein profile, and starch digestibility

Zeins are commercially important proteins found in corn endosperms. The objective of this study was to evaluate the effect of altering zein levels in corn inbred lines carrying endosperm mutations with differential allelic dosage and analyze the effects on the composition, nutritive value, and starch digestibility of whole-plant corn silage (WPCS) at 5 storage lengths. Three inbred lines carrying 3 different endosperm modifiers (opaque-2 [o2], floury-2 [fl2], and soft endosperm-1 [h1]) were pollinated with 2 pollen sources to form pairs of near-isogenic lines with either 2 or 3 doses of the mutant allele for each endosperm modifier. The experiment was designed as a split-plot design with 3 replications. Pollinated genotype was the main plot factor, and storage length was the subplot-level factor. Agronomic precautions were taken to mimic hybrid WPCS to the extent possible. Samples were collected at approximately 30% dry matter (DM) using a forage harvester and ensiled in heat-sealed plastic bags for 0, 30, 60, 120, and 240 d. Thus, the experiment consisted of 30 treatments (6 genotypes × 5 storage lengths) and 90 ensiling units (3 replications per treatment). Measurements included nutrient analysis, including crude protein, soluble crude protein, amylase-treated neutral detergent fiber, acid detergent fiber, lignin, starch, fermentation end products, zein concentration, and in vitro starch digestibility (ivSD). The nutritional profile of the inbred-based silage samples was similar to hybrid values reported in literature. Significant differences were found in fresh (unfermented) sample kernels for endosperm vitreousness and zein profiles between and within isogenic pairs. The o2 homozygous (3 doses of mutant allele) had the highest reduction in vitreousness level (74.5 to 38%) and zein concentration (6.2 to 4.7% of DM) compared with the heterozygous counterpart (2 doses of mutant allele). All genotypes showed significant reduction of total zeins and α-zeins during progressive storage length. In vitro starch digestibility increased with storage length and had significant effects of genotype and storage length but not for genotype by storage length interaction, which suggests that the storage period did not attenuate the difference in ivSD between near-isogenic pairs caused by zeins in WPCS. Both total zeins and α-zeins showed a strong negative correlation with ivSD, which agrees with the general hypothesis that the degradation of zeins increases ruminal starch degradability. Homozygous o2 was the only mutant with significantly higher ivSD compared with the heterozygous version, which suggests that, if all other conditions remain constant in a WPCS systems, substantial reductions in endosperm α-zeins are required to significantly improve ivSD in the silo.

Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout Lines.

Although metabolic alterations are observed in many monogenic and complex genetic disorders, the impact of most mammalian genes on cellular metabolism remains unknown. Understanding the effect of mouse gene dysfunction on metabolism can inform the functions of their human orthologues. We investigated the effect of loss-of-function mutations in 30 unique gene knockout (KO) lines on plasma metabolites, including genes coding for structural proteins (11 of 30), metabolic pathway enzymes (12 of 30) and protein kinases (7 of 30). Steroids, bile acids, oxylipins, primary metabolites, biogenic amines and complex lipids were analyzed with dedicated mass spectrometry platforms, yielding 827 identified metabolites in male and female KO mice and wildtype (WT) controls. Twenty-two percent of 23,698 KO versus WT comparison tests showed significant genotype effects on plasma metabolites. Fifty-six percent of identified metabolites were significantly different between the sexes in WT mice. Many of these metabolites were also found to have sexually dimorphic changes in KO lines. We used plasma metabolites to complement phenotype information exemplified for Dhfr, Idh1, Mfap4, Nek2, Npc2, Phyh and Sra1. The association of plasma metabolites with IMPC phenotypes showed dramatic sexual dimorphism in wildtype mice. We demonstrate how to link metabolomics to genotypes and (disease) phenotypes. Sex must be considered as critical factor in the biological interpretation of gene functions.

Genetic parameters in Conilon coffee in an irrigated systema in cerrado

The production of robusta coffee plays a significant role in the Brazilian economy and the agriculture of various Brazilian states due to its adaptability and high yield. The characterization of genetic resources and the estimation of genetic parameters of populations contribute to breeding programs in the development of genotypes adapted to the irrigated cultivation system in the Cerrado, for the target traits. The objective was to characterize the available genetic resources of robusta coffee in elite collections and estimate genetic parameters related to agronomic traits in an irrigated cultivation system in the Cerrado. Productivity, processed coffee yield, plant height, and the number of vegetative and reproductive nodes in plagiotropic branches were evaluated for 35 robusta coffee genotypes over two consecutive years, using a split-plot design with genotypes as the main plots, replicated three times, and years as the subplots. The data were subjected to analysis of variance, and genetic parameters were estimated. Significant genotype effects were observed only for plant height. Significant effects were observed for the year factor and genotype x year interaction for all traits. High heritability values and a genotypic coefficient of variation greater than the environmental coefficient of variation were obtained for plant height. Negative genotypic variances were obtained for the other traits. Favorable conditions exist for selecting smaller stature genotypes based on plant height, associated with productivity.

Addition of Saccharomyces eubayanus to SCOBY fermentations modulates the chemical and volatile compound profiles in kombucha

Kombucha is a fermented beverage derived from a sweetened tea fermentation inoculated with a bacteria-yeast consortium referred to as Symbiotic Culture of Bacteria and Yeast (SCOBY). Different SCOBY cultures can impact the beverage's quality and make the whole process highly variable. Adding Saccharomyces yeast cultures to the fermentation process can avoid stalled fermentations, providing a reproducible beverage. Here, we explored using different Saccharomyces eubayanus strains together with SCOBY in the context of kombucha fermentation. Our results show that yeast x SCOBY co-cultures exhibited a robust fermentation profile, providing ethanol and acetic acid levels ranging from 0,18–1,81 %v/v and 0,35–1,15 g/L, respectively. The kombucha volatile compound profile of co-cultures was unique, where compounds such as Isopentyl acetate where only found in yeast x SCOBY fermentations. Metabarcoding revealed that the SCOBY composition was also dependent on the S. eubayanus genotype, where besides Saccharomyces, amplicon sequence variants belonging to Brettanomyces and Starmerella were detected. These differences concomitated global changes in transcript levels in S. eubayanus related to the metabolism of organic molecules used in kombucha fermentation. This study highlights the potential for exploring different S. eubayanus strains for kombucha fermentation, and the significant yeast genotype effect in the profile differentiation in this process.

Nitrogen Use Efficiency in Oil Palm Seedlings: Unraveling the Untapped Potential of Elevated External Ammonium Supply.

Ammonium (NH4+) is an essential nitrogen source for plants, but excessive exposure can trigger stress responses that vary among and within different plant species. This study investigated the phenotypic variations in response to ammonium nutrition in five oil palm genotypes seedlings. Nitrate nutrition was used as a reference for a non-stressful condition, and three different nitrogen concentrations (5, 10, and 15 mM) were examined. Control groups without external nitrogen application were included for each genotype. Several parameters were analyzed, including plant growth, root length, gas exchange, fluorescence, chlorophyll, reducing sugars, amino acids, proteins, and nitrogen uptake. The results revealed a significant genotype effect, particularly between the interspecific OxG hybrid and the Elaeis guinensis genotypes. Ammonium nutrition increased shoot growth in all genotypes compared to nitrate nutrition. Additionally, there was a trend towards increased primary root length, amino acids, proteins, and nitrogen uptake under ammonium supply. These findings are promising, particularly considering the recommendation to use ammonium with inhibitors for environmental sustainability.

Grain γ-oryzanol and its constituent compounds show high genetic variability, diversity and significant site x genotype interactions in rice

Among the dietary antioxidants that counteract oxidative stress to avert the incidence of non-communicable diseases (NCDs), g-oryzanol, a unique antioxidant in rice shows potential health benefits. Although rice germplasm exhibits significant variation for g-oryzanol content, much less is studied on the influence of environment (E) and genotype-environment interaction (GEI) on the g-oryzanol content in rice bran. Evaluated under three sites, in a combined analysis of variance, a set of 18 genotypes showed significant effect of environment, genotype, and GEI on the g-oryzanol and its constituent compounds. A large proportion of total phenotypic variance was found due to genotype, indicating high heritability of the trait. GEI is the second major contributor to the phenotypic variance of g-oryzanol and its components, while the contribution of environment was found to be the least. CSR 23 was the superior genotype for g-oryzanol content and stability based on AMMI, GGE biplot and WAASB stability models analyzed. Besides CSR 23, genotypes such as DHMAS-70G-164-29, Chittimutyalu and HUR-200-57-1 were identified as stable and high g-oryzanol producing lines. These superior, stable lines can be used as potential donors for improving g-oryzanol content in rice. The present study assumes importance as the first report of GEI for total g-oryzanol and its five components.

The WUR0000125 PRRS resilience SNP had no apparent effect on pigs' infectivity and susceptibility in a novel transmission trial.

Porcine reproductive and respiratory syndrome (PRRS) remains one of the most important infectious diseases for the pig industry. A novel small-scale transmission experiment was designed to assess whether the WUR0000125 (WUR for Wageningen University and Research) PRRS resilience single nucleotide polymorphism (SNP) confers lower susceptibility and infectivity to pigs under natural porcine reproductive and respiratory syndrome virus (PRRSV-2) transmission. Commercial full- and half-sib piglets (n = 164) were assigned as either Inoculation, Shedder, or Contact pigs. Pigs were grouped according to their relatedness structure and WUR genotype, with R- and R+ referring to pigs with zero and one copy of the dominant WUR resilience allele, respectively. Barcoding of the PRRSV-2 strain (SD09-200) was applied to track pig genotype-specific transmission. Blood and nasal swab samples were collected and concentrations of PRRSV-2 were determined by quantitative (q)-PCR and cell culture and expressed in units of median tissue culture infectious dose (TCID50). The Log10TCID50 at each sampling event, derived infection status, and area under the curve (AUC) were response variables in linear and generalized linear mixed models to infer WUR genotype differences in Contact pig susceptibility and Shedder pig infectivity. All Shedder and Contact pigs, except one, became infected through natural transmission. There was no significant (p > 0.05) effect of Contact pig genotype on any virus measures that would indicate WUR genotype differences in susceptibility. Contact pigs tended to have higher serum AUC (p = 0.017) and log10TCID50 (p = 0.034) when infected by an R+ shedder, potentially due to more infectious R+ shedders at the early stages of the transmission trial. However, no significant Shedder genotype effect was found in serum (p = 0.274) or nasal secretion (p = 0.951) that would indicate genotype differences in infectivity. The novel design demonstrated that it is possible to estimate genotype effects on Shedder pig infectivity and Contact pig susceptibility that are not confounded by family effects. The study, however, provided no supportive evidence that genetic selection on WUR genotype would affect PRRSV-2 transmission. The results of this study need to be independently validated in a larger trial using different PRRSV strains before dismissing the effects of the WUR marker or the previously detected GBP5 gene on PRRSV transmission.

Physiological and Molecular Screening of High Temperature Tolerance in Okra [Abelmoschus esculentus (L.) Moench

Okra is a vegetable crop adapted to summer temperatures, but heat stress has been shown to reduce its growth and productivity. We measured physiological traits of 104 okra genotypes in response to high temperature, augmented by the molecular characterization of selected genotypes to identify parents for crossing. Genotypes were exposed to a short heat shock (45 °C, 4 h) in a controlled environment, followed by the assessment of chlorophyll fluorescence (Fv/Fm, Fv′/Fm′) and stomatal conductance (gs). DNA was isolated from all genotypes using a modified CTAB method with additional PVP and RNase, and the amplification of 8 polymorphic SSR markers was used to generate a dendrogram. This preliminary screening identified 33 polymorphic genotypes with less than 50% genetic similarity and contrasting Fv′/Fm′ and gs responses. More detailed physiological measurements (Fv/FmFv′/Fm′, gs, photosynthesis (A), efficiency of the open reaction centre (ΦPSII), and electrolyte leakage (EL)) were conducted after exposure to 45 °C for 6 h and compared to the control (30 °C). EL did not significantly increase in the heat treatment; in contrast, there were significant genotype and treatment effects observed for fluorescence (Fv/Fm, Fv′/Fm′) and photosynthetic parameters (A, ΦPSII, gs). In conclusion, cell membranes in okra remained unaffected after short periods of heat stress, whereas the ranking of differences of measured physiological traits (∆) between control and heat-treated plants (∆Fv′/Fm′, ∆Fv′/Fm′, ∆A, ∆ΦPSII, ∆gs) was indicative of genotype sensitivity to heat.

Elemental Variation of Berry Mineral Nutrient Content in Early Maturing Grapes Genotypes Grown Under Sub-tropical Climate

Cultivar development in grapes with increased mineral nutrient composition relies on the selection of genetically unique and complementary breeding lines. The objective of this study was to assess the peel, flesh and seed minerals composition of diverse grape collections of exotic and indigenous origin to select promising parents to develop a breeding population. Twenty-nine genetically diverse grape genotypes were field evaluated using a randomised complete block design with three replications under subtropical climatic conditions of New Delhi, India. The peel + flesh and seed mineral contents were determined using standard procedure. Analyses of variance showed significant (P < 0.05) effects of genotypes on the accumulation of 10 mineral nutrients in grape berry peel + flesh and seeds. The twenty-nine genotypes showed considerable variation for the following ten mineral contents: Nitrogen (N), Phosphorus (P), Potassium (K), Calcium (Ca), Magnesium(Mg), Iron (Fe), Copper (Cu), Zinc (Zn), Manganese (Mn) And Sodium (Na), and varying from 0.96 to 3.30 %; 0.14 to 0.22 %; 0.91 to 2.11 %; 0.23 to 0.38 %; 0.02 to 0.16 %; 27.58 to 77.69 ppm; 8.23 to 19.60 ppm; 14.60 to 64.10 ppm; 1.38 to 11.61 ppm and 0.00 to 0.24 ppm, respectively in berry peel and flesh together. Further, the seed mineral content also varied significantly among the genotypes. It was not assessed in the seedless genotypes due to a lack of seeds. Therefore, nineteen genotypes were tested for 10 mineral elements in their seed samples after drying. It was found significantly variable for nitrogen (0.88 to 2.12 %), phosphorus (0.18 to 0.34 %), potassium (0.35 to 0.87 %), calcium (0.26 to 0.92 %), magnesium (0.19 to 0.42 %), iron (33.02 to 96.94 ppm), copper (14.53 to 24.16 ppm), zinc (18.46 to 80.43 ppm), manganese (12.13 to 34.98 ppm) and sodium (0.01 to 0.12 ppm). The selected grape genotypes are useful genetic resources for population and cultivar development for nutrient composition.

OPRM1 A118G polymorphism modulating motor pathway for pain adaptability in women with primary dysmenorrhea.

Primary dysmenorrhea (PDM) is a common condition among women of reproductive age, characterized by menstrual pain in the absence of any organic causes. Previous research has established a link between the A118G polymorphism in the mu-opioid receptor (OPRM1) gene and pain experience in PDM. Specifically, carriers of the G allele have been found to exhibit maladaptive functional connectivity between the descending pain modulatory system and the motor system in young women with PDM. This study aims to explore the potential relationship between the OPRM1 A118G polymorphism and changes in white matter in young women with PDM. The study enrolled 43 individuals with PDM, including 13 AA homozygotes and 30 G allele carriers. Diffusion tensor imaging (DTI) scans were performed during both the menstrual and peri-ovulatory phases, and tract-based spatial statistics (TBSS) and probabilistic tractography were used to explore variations in white matter microstructure related to the OPRM1 A118G polymorphism. The short-form McGill Pain Questionnaire (MPQ) was used to access participants' pain experience during the MEN phase. Two-way ANOVA on TBSS analysis revealed a significant main effect of genotype, with no phase effect or phase-gene interaction detected. Planned contrast analysis showed that during the menstrual phase, G allele carriers had higher fractional anisotropy (FA) and lower radial diffusivity in the corpus callosum and the left corona radiata compared to AA homozygotes. Tractographic analysis indicated the involvement of the left internal capsule, left corticospinal tract, and bilateral medial motor cortex. Additionally, the mean FA of the corpus callosum and the corona radiata was negatively correlated with MPQ scales in AA homozygotes, but this correlation was not observed in G allele carriers. No significant genotype difference was found during the pain-free peri-ovulary phase. OPRM1 A118G polymorphism may influence the connection between structural integrity and dysmenorrheic pain, where the G allele could impede the pain-regulating effects of the A allele. These novel findings shed light on the underlying mechanisms of both adaptive and maladaptive structural neuroplasticity in PDM, depending on the specific OPRM1 polymorphism.

FTIR spectroscopy-based lipochemical fingerprints involved in pomegranate response to water stress

Pomegranate trees are known for their ability to withstand drought conditions, but there is still much to learn about how water stress affects the lipobiochemical behavior of their seeds. This study aimed to investigate how sustained deficit irrigation (SDI-50), equivalent to 50% of crop evapotranspiration, influences pomegranate seed oil attributes such as phenols, flavonoids, and tannins content, and the seeds’ lipochemical fingerprints compared to fully irrigated trees. At the full ripening stage, pomegranate seeds were analyzed for their oil content, biochemical traits, and vibrational fingerprints using infrared radiation. The results indicated that there was a significant genotypic effect coupled with applied water stress on all the investigated traits. Interestingly, an increasing trend in seed oil yield was observed under water stress conditions compared to the control, with the highest oil yield increase observed in the ‘Zheri Precoce’ fruit seeds. Only two cultivars did not show the same pattern, with the oil yield increase ranging from 8% to 100%. Furthermore, SDI-50 induced a substantial increase in total phenolic content, coupled with a significant genotypic effect, and resulted in an average increase of 7.5%. This increase in total phenolics also correlated with an increase in antioxidant activity across all investigated cultivars. ATR-FTIR fingerprinting revealed eleven spectral fingerprints corresponding to functional groups present in pomegranate seeds oil, with a particular pattern of significant effects of both genotypic and SDI-50 factors. These results suggest that exploiting water scarcity conditions could be a viable approach to improve the quantitative and qualitative attributes of pomegranate seed oil. While there are still several aspects to be investigated further, this study provides a basis for pomegranate processing under water shortage conditions.

Finding Phenotypic Biomarkers for Drought Tolerance in Solanum tuberosum

Climate change models predict increased drought frequencies. Maintaining yield stability necessitates drought-tolerant crops. However, their breeding is challenging; drought tolerance is a multigene trait with significant environment interaction. Thus, the training of genomic selection models requires phenotyping a large genotype population under arid conditions. We aimed to identify phenotypic tolerance traits that facilitate the screening of large populations in the field. We performed three trials on 20 tetraploid Solanum tuberosum ssp. tuberosum genotypes with significant drought tolerance variation. Plants were subjected to early, late and long-term drought under variable climate conditions. For each stress scenario, the drought tolerance index DRYMp was calculated from the relative tuber starch yield. A laser scanner system measured canopy development continuously over the crop’s lifecycle and provided estimates of leaf movement and canopy growth features. Growth curves were evaluated by logistic regression. Different multiple regression approaches were compared for their ability to predict tolerance from phenotype data of optimally watered or stressed plants. We established that early short-term stress can be used as a proxy for long-term stress in the absence of genetic variation for drought stress recovery or memory. The gen-otypes varied significantly in most canopy features. Leaf-area-based features combined significant genotype effects with environmental stability. Multiple regression models based on single-day data outperformed those based on the regression curve parameter. The models included leaf area and leaf position parameters and partially reproduced prior findings on siblings in a genetically more diverse population.

Genotype-by-environment interactions for starch, mineral, and agronomic traits in pearl millet hybrids evaluated across five locations in West Africa.

Pearl millet is a staple cereal grown in the harshest environments of arid and semi-arid regions of Asia and sub-Saharan Africa. It is the primary source of calories for millions of people in these regions because it has better adaptation to harsh environmental conditions and better nutritional traits than many other cereals. By screening the pearl millet inbred germplasm association panel (PMiGAP), we earlier reported the best genotypes with the highest concentration of slowly digestible and resistant starch in their grains. In the current study, we tested these 20 top-performing pearl millet hybrids, identified based on starch data, in a randomised block design with three replications at five locations in West Africa, viz. Sadore and Konni (Niger), Bambey (Senegal), Kano (Nigeria), and Bawku (Ghana). Phenotypic variability was assessed for agronomic traits and mineral traits (Fe and Zn). Analysis of variance demonstrated significant genotypic, environmental, and GEI effects among five testing environments for agronomic traits (days to 50% flowering, panicle length, and grain yield), starch traits (rapidly digestible starch, slowly digestible starch, resistant starch, and total starch), and mineral trait (iron and zinc). Starch traits, such as rapidly digestible starch (RDS) and slowly digestible starch (SDS), showed nonsignificant genotypic and environmental interactions but high heritability, indicating the lower environmental influence on these traits in the genotype × testing environments. Genotype stability and mean performance across all the traits were estimated by calculating the multi-trait stability index (MTSI), which showed that genotypes G3 (ICMX207070), G8 (ICMX207160), and G13 (ICMX207184) were the best performing and most stable among the five test environments.

Agronomic Evaluation of Potato (Solanum tuberosum L.) Genotypes for Tuber Yield and Yield Attributing Traits

The experiment was carried out under rain fed conditions for three consecutive years (2017–2019) from mid-June to mid-October at Bekoji and Kofele sub sites of Kulumsa Agricultural Research Center, Ethiopia by using improved varieties to identify superior genotypes. The experiment was laid out in a randomized complete block design with three replications. The results of analysis of variance (ANOVA) showed that the presence of significant (p<0.05) differences among genotypes for all traits studied. Analysis of variance revealed that location by year effect had highly significant difference at (p<0.01) for all traits except specific gravity which showed significant difference at (p<0.05). Treatment by location showed significant difference except stem number plant-1, total yield, and specific gravity. Treatment by year showed significant differences except for days to flowering. The highest marketable tuber yield was obtained from genotype CIP 395037.107 followed by variety Belete and CIP 395015.6 genotype. Simple correlation analysis revealed that total tuber yield showed strongly and positively significant correlation with average stem number plant-1, stem height and marketable yield. Thus, it could be concluded that genotypes, year and location variations as well as their interaction had considerable influence on tuber yield and the potato’s attributes. The significant interaction effects of genotypes, location, year and positive and strong association between total yield and other traits indicates the need to test potato genotypes over season and location in order to select stable and high yielder genotypes.

Selection of New Sugarcane Genotypes for Sandy Soils in Florida with Enhanced Sucrose Content

The selection of sugarcane genotypes with high sucrose content and good ratooning ability (RA) is an important objective of the Canal Point breeding program to improve the current profitability levels of the Florida sugarcane industry. In this study, thirteen test sugarcane genotypes and three checks were evaluated in three sand locations, Pahokee Produce Inc. (PP), Townsite farm (TS), and Lykes Brothers Inc. (PF), during three crop cycles (plant cane, first ratoon, and second ratoon). Multi-environment best linear unbiased predictors (BLUPs) were highly significant for commercially recoverable sucrose (CRS) and not significant for cane yield (CY) among genotypes. The ANOVA based on the RA values produced significant genotypic effects but a reduced RA diversity among the genotypes. The simultaneous selection for BLUP_CRS, BLUP_CY yield, and RA identified CP 14-4165 and CP 13-2340 as the most outstanding genotypes. The BLUP_GGE biplots method showed that the PP location was the most discriminative for BLUP_CY, whereas the TS was the ideal location. For BLUP_CRS, the three locations had similar abilities to discriminate genotypes and were positively and strongly correlated. The which-won-where graph indicated that CP 13-2340 showed the highest BLUP_CRS levels in TS and PP locations, while CP 14-4165 and CP 14-4588 were the top genotypes in the PF location. The results suggest that selecting genotypes with high CRS values is possible without compromising the genotype discrimination for CY. CP 14-4165 and CP 13-2340 are resistant to most diseases and genetically diverse.

Vascular endothelial growth factor receptor 1 gene (FLT1) longevity variant increases lifespan by reducing mortality risk posed by hypertension.

Longevity is written into the genes. While many so-called "longevity genes" have been identified, the reason why particular genetic variants are associated with longer lifespan has proven to be elusive. The aim of the present study was to test the hypothesis that the strongest of 3 adjacent longevity-associated single nucleotide polymorphisms - rs3794396 - of the vascular endothelial growth factor receptor 1 gene, FLT1, may confer greater lifespan by protecting against mortality risk from one or more adverse medical conditions of aging - namely, hypertension, coronary heart disease (CHD), stroke, and diabetes. In a prospective population-based longitudinal study we followed 3,471 American men of Japanese ancestry living on Oahu, Hawaii, from 1965 until death or to the end of December 2019 by which time 99% had died. Cox proportional hazards models were used to assess the association of FLT1 genotype with longevity for 4 genetic models and the medical conditions. We found that, in major allele recessive and heterozygote disadvantage models, genotype GG ameliorated the risk of mortality posed by hypertension, but not that posed by having CHD, stroke or diabetes. Normotensive subjects lived longest and there was no significant effect of FLT1 genotype on their lifespan. In conclusion, the longevity-associated genotype of FLT1 may confer increased lifespan by protecting against mortality risk posed by hypertension. We suggest that FLT1 expression in individuals with longevity genotype boosts vascular endothelial resilience mechanisms to counteract hypertension-related stress in vital organs and tissues.

Genotype x nutrition interactions in European sea bass (Dicentrarchus labrax): Effects on gut health and intestinal microbiota

One of the main objectives of the present study was an effective replacement of dietary fishmeal/fish oil (FM/FO) by new raw materials without negatively affecting European sea bass (Dicentrarchus labrax) performance and health status within a selection breeding context. The genomic selection of this species is still in its infancy if compared to salmonids and in particular, the role of D.labrax genome in shaping the gut microbiome, has been scarcely investigated.Wildtype (WT) and selected (GS) sea bass were fed with two diets: a control (20% FM/ 5–9% FO), and a “future” (F) diet, in which FM was decreased to 10% being replaced by poultry meal, whereas FO was completely replaced by a blend of rapeseed, poultry, and algae oils.The morphological evaluation of the intestine revealed a well-organized folding pattern and a conserved gut epithelial barrier for all fish groups. Despite a basal level of inflammation in the proximal intestine of WT fish, no differences were observed neither in the morphometric characteristics of goblet cells nor in the expression of GALT-related genes in response to fish genotype or diet. At distal intestine, WT fish showed a higher inflammatory status and larger goblet cells than GS fish and within the same genotype, fish fed the F diet had in general larger goblet cells. In distal intestine, a significant effect was found on the expression of 3 out of 7 target GALT genes. In particular, the expression of cytokines il-1β, tnf-α, and il-10 was different, showing an interaction effect diet x genotype.Diet had a lower influence upon gut bacterial composition than genotype. Indeed, regardless of the diet, WT fish showed higher species richness than GS genotype and this could be a direct consequence of selective breeding for multiple traits selection including growth, external morphology for lower abdominal fat deposition and adaptation to multiple and successive feed sources and composition across generations of selection. Furthermore, the gut microbiota of GS fish shared a reduced individual variability, indicating an enhanced capacity to cope with changes in diet composition. The less changes of GS sea bass at the level of gut bacterial composition in cumulating data collected with the feeds, demonstrate a capacity to reshape their microbiota thus better adapting to the diet, but with no negative impact on their growth performances, and even a better growth. A significant genotype effect was found for specific bacterial taxa, such as Paracoccus genus and other genera belonging to Moraxellaceae family, which were enriched in WT fish, regardless of the diet. Interestingly, the relative abundance of Paracoccus genus was positively correlated with higher proinflammatory cytokine il-1β expression found in distal intestine of wildtype sea bass.

The 3' UTR polymorphisms rs3742330 in DICER1 and rs10719 in DROSHA genes are not associated with primary open-angle and angle-closure glaucoma: As case-control study.

In a retrospective and exploratory case-control study, we examined the genetic association of two common polymorphisms in the 3' untranslated region (UTR) of DICER1 (rs3742330) and DROSHA (rs10719) genes in primary open-angle glaucoma (POAG) and primary angle-closure glaucoma (PACG), and its related clinical phenotypes in a Saudi cohort. DNA genotyping was performed using TaqMan real-time PCR assays in 500 participants, including 152 POAG, 102 PACG, and 246 non-glaucomatous controls. Statistical analyses were performed to examine the association(s). Allele and genotype frequency of rs3742330 and rs10719 did not vary significantly in POAG and PACG compared to controls. No significant deviation was observed from Hardy-Weinberg Equilibrium (p > 0.05). Gender stratification revealed no significant allelic/genotype association with glaucoma types. Also, these polymorphisms showed no significant genotype effect on clinical markers such as intraocular pressure, cup/disc ratio, and the number of antiglaucoma medications. Logistic regression showed no effect of age, sex, rs3742330, and rs10719 genotypes on the risk of disease outcome. We also examined a combined allelic effect of rs3742330 (A>G) and rs10719 (A>G). However, none of the allelic combinations significantly affected POAG and PACG. The 3' UTR polymorphisms rs3742330 and rs10719 of DICER1 and DROSHA genes are not associated with POAG and PACG or its related glaucoma indices in this Middle-Eastern cohort of Saudi Arab ethnicity. However, there is a need to validate the results on a broader population and other ethnicities.