The Wnt family of signaling molecules is an important regulator of stem cell biology, affecting many developmental processes, including cell growth and proliferation, cell differentiation, and embryonic patterning [1]. Wnt proteins are secreted, highly glycosylated, ligands that activate cytoplasmic pathways via ligand interaction with the coreceptors; low density lipoprotein receptor related protein 5/6 (LRP5/6) and frizzled G-protein coupled receptors [2]. βcatenin is central to Wnt signaling and when Wnt signaling is silent, forms a destruction complex with Axin, Adenomatous polyposis coli (APC), glycogen synthase kinase 3 (GSK3β), casein kinase 1 (CK1), and Disheveled (Dvl), promoting CK1 and GSK3β-mediated phosphorylation and subsequent degradation of β-catenin [3]. Upon a Wntmediated signal, the destruction complex dissociates, allowing β-catenin transit to the nucleus and interaction with transcription factors of the lymphoid enhancer binding factor (LEF)/T cell factor (TCF) family [4, 5] which triggers downstream expression of genes involved in decreasing cellular adhesion, increasing cell migration and differentiation [6]. β-catenin also plays a central role in the regulation of adherens junctions, linking N-cadherin to α-catenin and the actin cytoskeleton [7]. Wnt/β-catenin signaling is critically important for maintenance of embryonic stem (ES) cell pluripotency and is highly up-regulated in ES cells [8–10]. It plays a crucial role in controlling cell expansion in many types of stem cells [11]. Wnt can also influence cell lineage decisions in certain stem cell types by promoting specific fates at the expense of others [11]. Thus, Wnt signaling elicits multiple functions in stem cells. Wnt activity appears to depend on cell-intrinsic properties that might change with time during development, thereby altering the cellular response to Wnt [11]. However, detailed understanding of kinase/phosphatasedependent pathways involved in the regulation for Wnt signaling in ES cells is still not well understood. With the advent of genome wide RNA-mediated interference (RNAi) screening technologies, it is now possible to define the functional contributions of nearly every gene in the mammalian genome to specific signaling pathways or cellular processes in an unbiased manner [12–14]. In this study, we used ES cells as a platform to complete a more specific screen of mouse kinases and phosphatases that may be involved in the regulation of Wnt/β-catenin signaling.