Sigmodon Hispidus Research Articles

Muleshoe Virus and Other Hantaviruses Associated with Neotomine or Sigmodontine Rodents in Texas.

The broad objective of this study was to increase our knowledge of Muleshoe virus and other hantaviruses associated with cricetid rodents in Texas. Anti-hantavirus antibody was found in 38 (3.2%) of 1171 neotomine rodents and 6 (1.8%) of 332 sigmodontine rodents from 10 Texas counties; hantaviral RNA was detected in 23 (71.9%) of 32 antibody-positive rodents. Analyses of nucleocapsid protein gene sequences indicated Muleshoe virus infection in four hispid cotton rats (Sigmodon hispidus) from northern Texas; Bayou virus, three Texas marsh oryzomys (Oryzomys texensis) from the Gulf Coast; Limestone Canyon virus, five brush mice (Peromyscus boylii) from western Texas; and Sin Nombre virus-five Texas mice (P. attwateri), one Lacey's white-ankled deer mouse (P. laceianus), four white-footed mice (P. leucopus), and one fulvous harvest mouse (Reithrodontomys fulvescens) from northern, central, or southern Texas. The results of this study together with the results of a previous study revealed that Muleshoe virus, perhaps in association with S. hispidus, is distributed across northern Texas. Finally, the results of Bayesian analyses of glycoprotein precursor (GPC) gene sequences and pairwise comparisons of complete GPC (amino acid) sequences strengthened support for the notion that Muleshoe virus is distinct from Black Creek Canal virus, Bayou virus, and all other species included in the Bunyaviridae, genus Hantavirus.

Rodent response to harvesting woody biomass for bioenergy production

ABSTRACTHarvest of low value trees and logging residues for bioenergy reduces downed wood post‐harvest with potential indirect negative effects on ground‐dwelling wildlife such as rodents. We assessed the influence of woody biomass harvests on rodent abundances using an operational‐scale, randomized complete block experimental design study in North Carolina (4 blocks) and Georgia, USA (4 blocks). Each block contained 6 treatments randomly applied to a clearcut harvest, that varied by volume of woody biomass retained, and that represented existing woody biomass harvest recommendations. We livetrapped rodents in 2011–2013, calculated the minimum number known alive for each captured species, and used the value as an index of abundance. We compared abundance of the 3 most commonly captured species (deer mice [Peromyscus spp.], house mouse [Mus musculus], and hispid cotton rat [Sigmodon hispidus]) among treatments with generalized linear mixed effects models. We assessed relationships among species’ abundance and measurements of downed woody debris and vegetation in each treatment unit using linear regression. Although abundance varied among treatments in some cases, we did not detect consistent relationships between woody biomass retention treatments and abundance. Volume of downed woody debris in the treatment unit negatively influenced house mice but had varying influences on deer mice across years. Downed woody debris groundcover negatively affected deer mice in North Carolina in 2012. Litter groundcover negatively influenced deer mice and hispid cotton rats, whereas grass groundcover positively influenced the hispid cotton rat. The lack of consistent relationships between rodent abundance and volume of retained woody debris suggests that the rodent species captured in this study were not affected by current efficiencies of operational woody biomass harvests in southeastern United States loblolly pine (Pinus taeda) plantations. However, focal species were habitat generalists and less common species may have greater sensitivity to biomass harvests. © 2017 The Wildlife Society.

Low-basal area treatment and prescribed fire to restore oak-pine savannas alter small mammal communities

Following decades of fire suppression many oak-pine savanna ecosystems have shifted to closed-canopied forests. Restoration of these ecosystems to their savanna condition is seen as a way to reduce woody species encroachment and dangerous fuel loads, and restore community species composition. The management practices to achieve these goals typically involve thinning and prescribed fire. We assessed how thinning to reduce basal area combined with frequent prescribed fire influenced small mammal communities and their habitat. We focused on six habitat variables that can influence small mammal abundance and species composition: stand basal area of live trees and snags, volume of coarse woody debris, percent ground cover, forest floor depth, and distance of vulnerability, a measure of understory vegetation structure and animal vulnerability to predators. Although savanna restoration reduced basal area by 80%, there was no change in snag density or coarse woody debris volume. Savanna restoration significantly increased the ground cover of graminoids, forbs, bare ground, and down woody debris and reduced forest floor depth and distance of vulnerability. These habitat changes likely contributed to the significant differences between small mammal communities in restored and non-restored stands. Restoration treatments caused a large increase in abundance of White-footed Mouse (Peromyscus leucopus) and important changes in community assemblages. Least Shrew (Cryptotis parva), Fulvous Harvest Mouse (Reithrodontomys fulvescens), Eastern Harvest Mouse (R. humulis), and Hispid Cotton Rat (Sigmodon hispidus) were caught only in restored stands, while House Mouse (Mus musculus), Plains Harvest Mouse (R. montanus), and Texas Mouse (P. attwateri) were caught only in non-restored stands.

To the systematics of the subgenus Hesperomyobia Bochkov, 1997 (Acariformes: Myobiidae: Radfordia)

A new myobiid mite species Radfordia (Hesperomyobia) akodon sp. nov. is described from Akodon varius Thomas (Rodentia: Cricetidae: Sigmodontinae) from Bolivia. This new species is known only from a female which differs from those of Radfordia (H.) sigmodontis Radford from Sigmodon hispidus Ray and Ord, and Radfordia (H.) sigmomys Bochkov and Fain from Sigmodon alstoni (Thomas) by the following features. In R. (H.) akodon sp. nov., setae vi are 50 μm long and 7 μm wide (vs. 10–12 μm long and 2 μm wide in R. sigmodontis, and 23–25 μm long and 2 μm wide in R. sigmomys), dorsal idiosomal setae si, se, c1, c2, d1, and d2 are 5–10 μm wide (vs. 2–3 μm wide in R. sigmodontis and R. sigmomys), and setae e1 are 2.6 times longer than f1 (vs. subequal in R. sigmodontis and R. sigmomys). In addition, Radfordia (Hesperomyobia) vandenberghi Fain and Lukoschus is newly recorded herein from Oligoryzomys flavescens (Waterhouse) and Oligoryzomys sp. (Rodentia: Cricetidae: Sigmodontinae) in Bolivia. It is suggested that this mite species is associated exclusively with hosts of the genus Oligoryzomys Bangs.

Potential Sympatric Vectors and Mammalian Hosts of Venezuelan Equine Encephalitis Virus in Southern Mexico.

Arboviruses are important zoonotic agents with complex transmission cycles and are not well understood because they may involve many vectors and hosts. We studied sympatric wild mammals and hematophagous mosquitoes having the potential to act as hosts and vectors in two areas of southern Mexico. Mosquitoes, bats, and rodents were captured in Calakmul (Campeche) and Montes Azules (Chiapas), between November 2010 and August 2011. Spleen samples from 146 bats and 14 rodents were tested for molecular evidence of Venezuelan equine encephalitis virus (VEEV), eastern equine encephalitis virus (EEEV), western equine encephalitis virus (WEEV), and West Nile virus (WNV) using PCR protocols. Bat ( Artibeus lituratus , Carollia sowelli , Glossophaga soricina , and Sturnira parvidens) and rodent ( Sigmodon hispidus and Oryzomys alfaroi ) species were positive for VEEV. No individuals were positive for WNV, EEEV, or WEEV. A total of 1,298 mosquitoes were collected at the same sites, and five of the mosquito species collected were known VEEV vectors (Aedes fulvus, Mansonia indubitans, Psorophora ferox, Psorophora cilipes, and Psorophora confinnis). This survey simultaneously presents the first molecular evidence, to our knowledge, of VEEV in bats and rodents from southern Mexico and the identification of potential sympatric vectors. Studies investigating sympatric nonhuman hosts, vectors, and arboviruses must be expanded to determine arboviral dynamics in complex systems in which outbreaks of emerging and reemerging zoonoses are continuously occurring.

Characterisation of the vascular pathology in Sigmodon hispidus (Rodentia: Cricetidae) following experimental infection with Angiostrongylus costaricensis (Nematoda: Metastrongylidae).

BACKGROUNDAngiostrongylus costaricensis is a nematode that causes human abdominal angiostrongyliasis, a disease found mainly in Latin American countries and particularly in Brazil and Costa Rica. Its life cycle involves exploitation of both invertebrate and vertebrate hosts. Its natural reservoir is a vertebrate host, the cotton rat Sigmodon hispidus. The adult worms live in the ileo-colic branches of the upper mesenteric artery of S. hispidus, causing periarteritis. However, there is a lack of data on the development of vasculitis in the course of infection.OBJECTIVE To describe the histopathology of vascular lesions in S. hispidus following infection with A. costaricensis.METHODS Twenty-one S. hispidus were euthanised at 30, 50, 90 and 114 days post-infection (dpi), and guts and mesentery (including the cecal artery) were collected. Tissues were fixed in Carson’s Millonig formalin, histologically processed for paraffin embedding, sectioned with a rotary microtome, and stained with hematoxylin-eosin, resorcin-fuchsin, Perls, Sirius Red (pH = 10.2), Congo Red, and Azan trichrome for brightfield microscopy analysis.FINDINGS At 30 and 50 dpi, live eggs and larvae were present inside the vasa vasorum of the cecal artery, leading to eosinophil infiltrates throughout the vessel adventitia and promoting centripetal vasculitis with disruption of the elastic layers. Disease severity increased at 90 and 114 dpi, when many worms had died and the intensity of the vascular lesions was greatest, with intimal alterations, thrombus formation, iron accumulation, and atherosclerosis.CONCLUSION In addition to abdominal angiostrongyliasis, our data suggest that this model could be very useful for autoimune vasculitis and atherosclerosis studies.

Ecology of the Eastern Kingsnake (Lampropeltis getula) at Rainey Slough, Florida: A Vanished Eden

Abstract: Eastern Kingsnakes (Lampropeltis getula) are an important component and predator in herpetofaunal communities, but many Eastern Kingsnake populations have declined precipitously in the last few decades, particularly in the southeastern United States. Here, we describe an intensive capture–mark–recapture study of L. getula conducted during 1974–1978 in a canal bank–Water Hyacinth (Eichhornia crassipes) community at Rainey Slough in southern Florida, where annual capture probabilities of adults ranged from 0.662–0.787. Population size and structure, seasonal activity, movements, microhabitat use, behavior, thermal ecology, and predator–prey relationships are described. At this site kingsnakes were susceptible to capture mostly in winter and spring, were diurnal, used rodent (Sigmodon hispidus) burrows on canal banks as nocturnal retreats, and emerged from burrows on 13–26% of the sampling days. Overlap of burrow use by both sexes was extensive with no evidence of territoriality. Kingsnakes readily...

A single dose of epidermicin NI01 is sufficient to eradicate MRSA from the nares of cotton rats.

Objectives: To investigate the efficacy of a potent novel antimicrobial protein of mass 6 kDa, epidermicin NI01, for eradicating the nasal burden of MRSA in a cotton rat (Sigmodon hispidus) model.Methods: MRSA strain ATCC 43300 was used to establish a robust colonization of cotton rat nares. This model was used to evaluate the efficacy of topical 0.04% and 0.2% epidermicin NI01, administered twice daily for 3 days consecutively, and topical 0.8% epidermicin NI01 administered once, for reducing nasal MRSA burden. Control groups remained untreated or were administered vehicle only (0.5% hydroxypropylmethylcellulose) or 2% mupirocin twice daily for 3 days. The experiment was terminated at day 5 and MRSA quantitative counts were determined. Tissues recovered from animals treated with 0.2% epidermicin twice daily for 3 days were examined for histological changes.Results: Mupirocin treatment resulted in a reduction in burden of log10 (log R) of 2.59 cfu/nares compared with vehicle (P < 0.0001). Epidermicin NI01 administered once at 0.8% showed excellent efficacy, resulting in a log R of 2.10 cfu/nares (P = 0.0004), which was equivalent to mupirocin. Epidermicin NI01 administered at 0.2% or 0.04% twice daily for 3 days did not have a significant impact on the tissue burden recovered from the nares. Mild to marked histological abnormalities were noted, but these were determined to be reversible.Conclusion: A single dose of topical epidermicin NI01 was as effective as mupirocin administered twice daily for 3 days in eradication of MRSA from the nares of cotton rats. This justifies further development of epidermicin for this indication.

First Record ofBartonella vinsoniiin the Sucking LouseHoplopleura hirsutaCollected from Hispid Cotton Rats,Sigmodon hispidus, in Mexico

This study determined the presence of Bartonella species in sucking lice from hispid cotton rat, Sigmodon hispidus Say and Ord, at San Luis Potosí, Mexico. Louse specimens were processed for morphological identification and evaluated for Bartonella DNA. A single sucking louse species was found and identified as Hoplopleura hirsuta Ferris. DNA was extracted from 20 adults, and a 379-bp fragment of Bartonella citrate synthase (gltA) gene was amplified. Six lice (30%) were positive for Bartonella DNA, and all sequences found belonged to Bartonella vinsonii Brenner et al. To our knowledge, this is the first report of a member of B. vinsonii complex associated with sucking lice.

Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon hispidus).

In recent years, there has been a significant increase in detection of Enterovirus D-68 (EV-D68) among patients with severe respiratory infections worldwide. EV-D68 is now recognized as a re-emerging pathogen; however, due to lack of a permissive animal model for EV-D68, a comprehensive understanding of the pathogenesis and immune response against EV-D68 has been hampered. Recently, it was shown that EV-D68 has a strong affinity for α2,6-linked sialic acids (SAs) and we have shown previously that α2,6-linked SAs are abundantly present in the respiratory tract of cotton rats (Sigmodon hispidus). Thus, we hypothesized that cotton rats could be a potential model for EV-D68 infection. Here, we evaluated the ability of two recently isolated EV-D68 strains (VANBT/1 and MO/14/49), along with the historical prototype Fermon strain (ATCC), to infect cotton rats. We found that cotton rats are permissive to EV-D68 infection without virus adaptation. The different strains of EV-D68 showed variable infection profiles and the ability to produce neutralizing antibody (NA) upon intranasal infection or intramuscular immunization. Infection with the VANBT/1 resulted in significant induction of pulmonary cytokine gene expression and lung pathology. Intramuscular immunization with live VANBT/1 or MO/14/49 induced strong homologous antibody responses, but a moderate heterologous NA response. We showed that passive prophylactic administration of serum with high content of NA against VANBT/1 resulted in an efficient antiviral therapy. VANBT/1-immunized animals showed complete protection from VANBT/1 challenge, but induced strong pulmonary Th1 and Th2 cytokine responses and enhanced lung pathology, indicating the generation of exacerbated immune response by immunization. In conclusion, our data illustrate that the cotton rat is a powerful animal model that provides an experimental platform to investigate pathogenesis, immune response, anti-viral therapies and vaccines against EV-D68 infection.

Cotton Rats Alter Foraging in Response to an Invasive Ant.

We assessed the effects of red imported fire ants (Solenopsis invicta; hereafter fire ant) on the foraging of hispid cotton rats (Sigmodon hispidus). We used a manipulative experiment, placing resource patches with a known amount of millet seed within areas with reduced (RIFA [–]) or ambient (RIFA [+]) numbers of fire ants. We measured giving up densities (the amount of food left within each patch) within the resource patches for 4 days to quantify the effects of fire ants on cotton rat foraging. We assessed the effects of fire ant treatment (RIFA), Day, and their interaction on cotton rat giving up densities. Giving up densities on RIFA [+] grids were nearly 2.2 times greater across all foraging days and ranged from 1.6 to 2.3 times greater from day 1 to day 4 than the RIFA [–] grids. From day 1 to day 4, mean giving up densities decreased significantly faster for the RIFA [–] than RIFA [+] treatments, 58% and 13%, respectively. Our results demonstrate that cotton rats perceive a risk of injury from fire ants, which is likely caused by interference competition, rather than direct predation. Envenomation from ants likely decrease the foraging efficiency of cotton rats resulting in more time spent foraging. Increased time spent foraging is likely stressful in terms of the opportunity for direct injury and encounters with other predators. These indirect effects may reduce an individual cotton rat’s fitness and translate into lowered population abundances.

East meets west: Location of the contact zone between genetic lineages of the cotton rat,Sigmodon hispidus, in southeastern Texas

Abstract Two genetic lineages of the hispid cotton rat, Sigmodon hispidus, form an area of contact at one location in eastern Texas, with hybridization occurring, but the position of the contact zone in other areas of the United States remains unknown. The purpose of our study was to identify the location of the contact zone at its southernmost point. We employed a nuclear DNA fingerprinting technique, amplified fragment length polymorphism (AFLP), using 20 specimens collected from Orange, Brazoria, and Matagorda counties, Texas, along with reference specimens representative of the two lineages. Our results showed that in southeastern Texas the contact zone occurred in the vicinity of Galveston Bay.

Passive narcosis for anesthesia induction in cotton rats (Sigmodon hispidus)

Cotton rats (Sigmodon hispidus) are widely used as animal models for infectious disease and immunological research. They emulate many aspects of human disease pathogenesis, and the introduction of cotton rat-specific immunological reagents, cell lines and sequencing of relevant genes have all helped to increase the popularity of this disease model. However, the use of cotton rats is problematic owing to their propensity for aggressive responses when handled, which can lead to escape, increased stress to the animals, and bites to staff. When cotton rats are co-housed, which is recommended under current social housing guidelines, these risks are increased. Here, we describe a method of isoflurane anesthesia induction in the home cage that reduces the risk of animal escape, minimizes stress during induction, and provides additional safety for staff. The method uses inexpensive materials that are widely available and can be easily disinfected. Our method also eliminates the need for expensive and cumbersome machines traditionally used with anesthetic chambers, and uses a minimal amount of inhalant anesthetic, saving resources and protecting staff from inhalation of leaked gas.

Effects of habitat modification on cotton rat population dynamics and rodent community structure

Concerns over climate change and finite fossil fuels have generated interest in biofuels. Switchgrass (Panicum virgatum), a biofuel feedstock, was planted in intensively managed loblolly pine (Pinus taeda) stands to investigate sustainability of this system for producing an alternative energy source. We hypothesized that changes in understory habitat conditions caused by intercropping switchgrass in pine stands would affect rodent population and community dynamics within three years. Therefore, we assessed effects of three treatments (control pine, switchgrass intercropped in pine, and switchgrass monocrop) on rodent population (abundance, survival, and recruitment) and community (diversity, richness, evenness, and community assemblages) measures. We conducted vegetation surveys and live-trapping during 2013–2015 summers in Kemper County, Mississippi, USA. We conducted 6 trapping sessions each summer (n=14,112 trap nights per year) and captured 1,733 cotton rats (Sigmodon hispidus), 102 Oryzomys palustris, 31 Mus musculus, 28 Reithrodontomys fulvescens, 22 Reithrodontomys humulis, 20 Peromyscus leucopus, 9 Microtus pinetorum, 9 Peromyscus gossypinus, and 2 Neotoma floridana. We found greater cotton rat abundance and lower recruitment in monocrop versus control plots. Rodent diversity was lower in monocrop than control plots. Intercropped plots had intermediate levels of cotton rat abundance and recruitment, and rodent diversity. More dispersal may have occurred in monocrop plots because of high population abundance and limited habitat availability. Cotton rat survival and rodent community assemblage were similar among treatments but differed among years. Although rodents responded negatively to monocrop plots, our results suggested intercropped plots would be an appropriate management practice in pine plantations to produce biofuel feedstocks while maintaining rodent diversity.

Epithelial cell lines of the cotton rat (Sigmodon hispidus) are highly susceptible in vitro models to zoonotic Bunya-, Rhabdo-, and Flaviviruses.

BackgroundSmall mammals such as bats and rodents have been increasingly recognized as reservoirs of novel potentially zoonotic pathogens. However, few in vitro model systems to date allow assessment of zoonotic viruses in a relevant host context. The cotton rat (Sigmodon hispidus) is a New World rodent species that has a long-standing history as an experimental animal model due to its unique susceptibility to human viruses. Furthermore, wild cotton rats are associated with a large variety of known or potentially zoonotic pathogens.MethodsA method for the isolation and culture of airway epithelial cell lines recently developed for bats was applied for the generation of rodent airway and renal epithelial cell lines from the cotton rat. Continuous cell lines were characterized for their epithelial properties as well as for their interferon competence. Susceptibility to members of zoonotic Bunya-, Rhabdo-, and Flaviviridae, in particular Rift Valley fever virus (RVFV), vesicular stomatitis virus (VSV), West Nile virus (WNV), and tick-borne encephalitis virus (TBEV) was tested. Furthermore, novel arthropod-derived viruses belonging to the families Bunya-, Rhabdo-, and Mesoniviridae were tested.ResultsWe successfully established airway and kidney epithelial cell lines from the cotton rat, and characterized their epithelial properties. Cells were shown to be interferon-competent. Viral infection assays showed high-titre viral replication of RVFV, VSV, WNV, and TBEV, as well as production of infectious virus particles. No viral replication was observed for novel arthropod-derived members of the Bunya-, Rhabdo-, and Mesoniviridae families in these cell lines.ConclusionIn the current study, we showed that newly established cell lines from the cotton rat can serve as host-specific in vitro models for viral infection experiments. These cell lines may also serve as novel tools for virus isolation, as well as for the investigation of virus-host interactions in a relevant host species.

A review of Gongylonema spp. (Nematoda: Gongylonematidae) in North American rodents with description of a new species from the cotton rat, Sigmodon hispidus (Mammalia: Cricetidae).

Gongylonema archboldi n. sp. (Nematoda: Gongylonematidae) is described from tunnels in the gastric mucosa of the stomach of the cotton rat (Sigmodon hispidus) from Highlands County, Florida, U.S.A. Measurements are also given for specimens from cotton mice (Peromyscus gossypinus), oldfield mice (Peromyscus polionotus), Florida mice (Podomys floridanus), and golden mice (Ochrotomys nuttalli) from the same locality. Additional specimens were collected from the cotton rat and the rice rat (Oryzomys palustris) from Berry Island, San Patricio County, Texas. The new species is differentiated from congeners by a combination of the following characters: length of the left spicule, length and shape of the gubernaculum, distribution of cuticular bosses, length of esophagus, and distance of the vulva from the posterior end. The status of the genus Gongylonema in North American rodents is reviewed.

Female cotton rats (Sigmodon hispidus) develop chronic anemia with renal inflammation and cystic changes.

The cotton rat (Sigmodon hispidus) is a laboratory rodent that has been used for studies on human infectious diseases. In the present study, we observed that female cotton rats, not the male cotton rats, developed chronic anemia characterized by reduced red blood cell, hemoglobin, and hematocrit levels from 5 to 9months of age without any changes in the mean corpuscular hemoglobin and volume levels. In peripheral blood, the reticulocyte count did not increase in response to anemia in female cotton rats, and no extramedullary hematopoiesis was observed in the liver or spleen. Further, the serum levels of urea nitrogen and creatinine increased from 5 to 9months of age in female cotton rats compared to male cotton rats, and these increases became more prominent from 10months of age onward, indicating chronic kidney disease. Histopathologically, female cotton rats manifested tubulointerstitial lesions characterized by the infiltration of mononuclear cells, including plasma cells and CD3(+) T-cells, as well as the dilation of calbindin-D28k(+) distal tubules from 5 to 9months of age. The severity of these lesions progressed from 10months of age onward, and renal fibrotic features and numerous tubular cysts appeared without any obvious glomerular lesions. A significant decrease in the erythropoietin protein levels was observed in the kidney of aged female cotton rats, and significant correlations were detected between anemia and tubulointerstitial damage. These results suggest that aged female cotton rats chronically develop renal anemia, and this rodent may serve as a novel model to elucidate its pathogenesis.

Challenges to a molecular approach to prey identification in the Burmese python, Python molurus bivittatus.

Molecular approaches to prey identification are increasingly useful in elucidating predator–prey relationships, and we aimed to investigate the feasibility of these methods to document the species identities of prey consumed by invasive Burmese pythons in Florida. We were particularly interested in the diet of young snakes, because visual identification of prey from this size class has proven difficult. We successfully extracted DNA from the gastrointestinal contents of 43 young pythons, as well as from several control samples, and attempted amplification of DNA mini-barcodes, a 130-bp region of COX1. Using a PNA clamp to exclude python DNA, we found that prey DNA was not present in sufficient quality for amplification of this locus in 86% of our samples. All samples from the GI tracts of young pythons contained only hair, and the six samples we were able to identify to species were hispid cotton rats. This suggests that young Burmese pythons prey predominantly on small mammals and that prey diversity among snakes of this size class is low. We discuss prolonged gastrointestinal transit times and extreme gastric breakdown as possible causes of DNA degradation that limit the success of a molecular approach to prey identification in Burmese pythons.

The microbial community structure of the cotton rat nose.

The cotton rat nose is commonly used as a model for Staphylococcus aureus colonization, as it is both physiologically and anatomically comparable to the human nares and can be easily colonized by this organism. However, while the colonization of the human anterior nares has been extensively studied, the microbial community structure of cotton rat noses has not been reported so far. We describe here the microbial community structure of the cotton rat (Sigmodon hispidus) nose through next-generation sequencing of 16S rRNA gene amplicons covering the V1-V2 region and the analysis of nearly full length 16S rRNA genes of the major phylotypes. Roughly half of the microbial community was composed of two undescribed species of the genus Campylobacter, with phylotypes belonging to the genera Catonella, Acholeplasma, Streptobacillus and Capnocytophaga constituting the predominant community members. Thus, the nasal community of the cotton rat is uniquely composed of several novel bacterial species and may not reflect the complex interactions that occur in human anterior nares. Mammalian airway microbiota may, however, be a rich source of hitherto unknown microbes.

Function and expression of CD1d and invariant natural killer T-cell receptor in the cotton rat (Sigmodon hispidus).

The cotton rat (Sigmodon hispidus) belongs to the rodent family of Cricetidae and provides a powerful model to study the pathogenesis of human respiratory viruses and measles virus. Recent studies in other rodent models have suggested a role for invariant natural killer T (iNKT) cells in antiviral immunity and vaccination against respiratory virus infections. Using new experimental tools, we provide the first evidence for a functional CD1d cell molecule (crCD1d) and iNKT T-cell receptor in cotton rats. The crCD1d cDNA sequence was identified and crCD1d transductants showed that monoclonal antibody WTH-2 stains crCD1d as efficiently as mouse or rat CD1d. The expression of crCD1d was clearly weaker for thymocytes and B cells, and higher for T cells, which is different to what is found in murine species. The antigen-presenting capacity of crCD1d was demonstrated with crCD1d-immunoglobulin dimers loaded with the glycolipid PBS57, which bound iNKT T-cell receptors. Evidence for functional cotton rat iNKT cells was provided by detection of interferon-γ and interleukin-4 in cultures of splenocytes stimulated with PBS57 and α-galactosylceramide and by specific staining of about 0·2% of splenocytes with PBS57-loaded crCD1d dimers. Canonical AV14/AJ18 rearrangements were identified and found to contain multiple members of the AV14 (AV11) family. One of them was expressed and found to bind CD1d dimers. In summary, these data provide the first evidence for functional CD1d molecules and iNKT T-cell receptors in cotton rats and provide the tools to analyse them both in the cotton rat model of infectious diseases.