Siderastrea Siderea Research Articles

Locally Adapted Coral Species Withstand a 2-Week Hypoxic Event

One approach to improve long-term coral restoration success utilizes naturally stress-tolerant corals from the wild. While the focus has primarily been on thermal stress, low oxygen is a growing threat to coral reefs and restoration efforts should also consider hypoxia tolerance. Here we determine if Siderastrea siderea and Agaricia tenuifolia populations from a reef with a historical record of low oxygen exhibit evidence of local adaptation to hypoxic events, compared to populations from a reference reef. We employed a laboratory-based reciprocal transplant experiment mimicking a severe 14-night hypoxic event and monitored bleaching responses, photo-physiology, metabolic rates, and survival of all four populations during, and for two weeks following the event. In both species, we found the populations from the hypoxic reef either fully persisted or recovered within 3 days of the event. In contrast, the conspecific naïve populations from the well-oxygenated reference reef experienced bleaching and death. This showcases the vulnerability of naïve corals exposed to low oxygen but also suggests that corals from the hypoxic reef locally adapted to survive severe episodic hypoxia. Other reefs with past episodic low oxygen may also be home to corals with adaptation signatures to hypoxia and may be useful for restoration efforts.

Decrypting Corals: Does Regulatory Evolution Underlie Environmental Specialisation of Coral Cryptic Lineages?

A recent sequencing study has shown that two common Caribbean corals, Montastraea cavernosa and Siderastrea siderea, each consist of four genetically distinct lineages in the Florida Keys. These lineages are specialised to a certain depth and, to a lesser extent, to nearshore or offshore habitats. We hypothesised that the lineages' environmental specialisation is at least in part due to regulatory evolution, which would manifest as the emergence of groups of coregulated genes ('modules') demonstrating lineage-specific responses to different reef environments. Our hypothesis also predicted that genes belonging to such modules would show greater genetic divergence between lineages than other genes. Contrary to these expectations, responses of cryptic lineages to natural environmental variation were essentially the same at the genome-wide gene coexpression network level, with much fewer differences in gene expression between lineages compared to between habitats. Moreover, none of the identified coregulated gene expression modules exhibit elevated genetic divergence between lineages. Possible explanations of these unexpected results range from the leading role of algal symbionts and/or microbiome in adaptation to strong action of spatially varying selection equalising gene expression patterns despite different genetic background. We discuss how future studies could assist in discriminating between these possibilities.

Microbiomes of three coral species in the Mexican Caribbean and their shifts associated with the Stony Coral Tissue Loss Disease.

Stony Coral Tissue Loss Disease (SCTLD) has caused widespread coral mortality in the Caribbean Region. However, how the disease presence alters the microbiome community, their structure, composition, and metabolic functionality is still poorly understood. In this study, we characterized the microbial communities of the tissues of apparently healthy and diseased SCTLD colonies of the species Siderastrea siderea, Orbicella faveolata, and Montastraea cavernosa to explore putative changes related to the presence of SCTLD. Gammaproteobacteria, Alphaproteobacteria, and Bacteroidia were the best represented classes in the healthy tissues of all coral species, and alpha diversity did not show significant differences among the species. The microbial community structure between coral species was significantly different (PERMANOVA: F = 3.46, p = 0.001), and enriched genera were detected for each species: Vibrio and Photobacterium in S. siderea, Spirochaeta2 and Marivivens in O. faveolata and SAR202_clade and Nitrospira in M. cavernosa. Evidence of SCTLD in the microbial communities was more substantial in S. siderea, where differences in alpha diversity, beta diversity, and functional profiles were observed. In O. faveolata, differences were detected only in the community structure, while M. cavernosa samples showed no significant difference. Several microbial groups were found to have enriched abundances in tissue from SCTLD lesions from S. siderea and O. faveolata, but no dominant bacterial group was detected. Our results contribute to understanding microbial diversity associated with three scleractinian coral species and the shifts in their microbiomes associated with SCTLD in the Mexican Caribbean.

Genomes of the Caribbean reef-building corals Colpophyllia natans, Dendrogyra cylindrus, and Siderastrea siderea.

Corals populations worldwide are declining rapidly due to elevated ocean temperatures and other human impacts. The Caribbean harbors a high number of threatened, endangered, and critically endangered coral species compared to reefs of the larger Indo-Pacific. The reef corals of the Caribbean are also long diverged from their Pacific counterparts and may have evolved different survival strategies. Most genomic resources have been developed for Pacific coral species which may impede our ability to study the changes in genetic composition of Caribbean reef communities in response to global change. To help fill the gap in genomic resources, we used PacBio HiFi sequencing to generate the first genome assemblies for three Caribbean, reef-building corals, Colpophyllia natans, Dendrogyra cylindrus, and Siderastrea siderea. We also explore the genomic novelties that shape scleractinian genomes. Notably, we find abundant gene duplications of all classes (e.g., tandem and segmental), especially in S. siderea. This species has one of the largest genomes of any scleractinian coral (822Mb) which seems to be driven by repetitive content and gene family expansion and diversification. As the genome size of S. siderea was double the size expected of stony corals, we also evaluated the possibility of an ancient whole genome duplication using Ks tests and found no evidence of such an event in the species. By presenting these genome assemblies, we hope to develop a better understanding of coral evolution as a whole and to enable researchers to further investigate the population genetics and diversity of these three species.

Hurricane Irma Linked to Coral Skeletal Density Shifts on the Florida Keys Reef Tract.

Coral reefs are at risk due to various global and local anthropogenic stressors that impact the health of reef ecosystems worldwide. The most recent climate models predict that climate change will increase the frequency and intensity of tropical storms. This increased storm occurrence and strength will likely compromise coral reef structures and habitats for reef-dwelling organisms, including across the Florida Keys Reef Tract (FKRT), the most extensive tropical reef system along the US coast. While several recent studies reveal the chronic impacts of tropical storms on corals, relatively little is known about the effects of major storm events on coral growth and how these effects vary over spatiotemporal scales. Here, I characterize the skeletal growth of two common Caribbean reef-building coral species, Siderastrea siderea and Pseudodiploria strigosa, before and after Hurricane Irma to investigate the storm's impact on coral skeletal growth on inner and outer reefs of the FKRT. Coral cores were extracted from both species at four inner and four outer reef sites in May 2015, before Hurricane Irma struck the Florida Keys in September 2017. Subsequently, 33 micro-cores were collected in May 2019, two years after the storm traversed our previously cored coral colonies. A three-way ANOVA model with storm, species, and reef location as the three factors was used to assess the impact of the storm on each of three growth parameters: skeletal density, linear extension, and calcification rates. Results reveal no difference in the coral annual skeletal growth parameters pre- and post-Hurricane Irma, although previously quantified differences in these growth parameters across species and location were observed. However, analysis of the "yearly" change in annual skeletal growth parameters showed significant differences in skeletal density across groups before and after Hurricane Irma, but not for linear extension and calcification rates. Our findings improve an understanding of the impacts of tropical storms on coral skeletal growth and offer new insights into how we can employ corals' innate growth capacities to help conserve coral reefs under climate change.

Re-evaluating Marine Isotope Stage 5a paleo-sea-level trends from across the Florida Keys reef tract

Unraveling how Global Mean Sea Level (GMSL) fluctuated during past warm periods can improve our understanding of linkages between sea-level fluctuations, orbital forcing, and ice-sheet dynamics. Current estimates of GMSL for Marine Isotope Stages (MIS) 5a and 5c — two warm intervals following the relatively well-documented MIS 5e — contain meters of uncertainty and fewer data due to several challenges. These challenges include concealment of datable in-situ coral facies by MIS 1 deposits and inaccessibility due to submergence by modern sea level. We present a comprehensive dataset based on U–Th dating and stratigraphic correlation of 23 cores totaling over 170 m of recovered coral-reef deposits across the tectonically stable Florida Keys Reef Tract (FKRT). Following detailed facies descriptions, 34 in-situ, minimally altered aragonitic coral samples (≤2.7% calcite) below the Holocene-Pleistocene boundary were targeted for U–Th geochronology. Fourteen closed-system coral U–Th ages from MIS 5a include the commonly used sea-level indicator Acropora palmata, but also the massive coral taxa Pseudodiploria strigosa, Siderastrea siderea, Orbicella spp., and Porites astreoides. Dating yielded ages in the range of 88–81 ka (average 2σ uncertainty of less than 200 years). These ages suggest MIS 5a reef initiation at ∼88 ka BP, a peak near 83 ka with minimum elevations between −6.0 ± 0.5 and −5.6 ± 0.5 m MSL (2σ uncertainty and subsidence-corrected), and reef termination and sea-level fall by ∼81 ka BP. Notably, the range of peak MIS 5a relative sea-level estimates of −6.5 to −5.1 m MSL are more than 2 m shallower (higher) than previous estimates of −11 to −9 m. Our higher resolution regional sea-level reconstruction across four subregions of the Florida Keys reef tract aligns with changes in July insolation at 65° N: a trend that most other records, such as deep-sea sediments, do not have the accuracy and precision to resolve. Three massive coral samples from MIS 5c, consisting of Pseudodiploria clivosa, and Orbicella spp., yielded ages in the range of 104 to 99 ka (average 2σ uncertainty less than 200 years); however, because only one sample met the closed-system criteria, our ability to estimate MIS 5c sea level is relatively limited. More empirical estimates of sea-level from the MIS 5a and MIS 5c intervals based on numerical dating of reliable local sea-level constraints are critical for GMSL calculations and relating changes in sea-level amplitude and timing to global ice volume modeling and glacio-isostatic effects, all of which can improve predictions of future sea-level changes in coastal regions.

Spatial differences in recruit density, survival, and size structure prevent population growth of stony coral assemblages in southeast Florida

The size structure of stony coral populations can reveal underlying demographic barriers to population growth or recovery. Recent declines in coral cover from acute disturbances are well documented, but few studies have assessed size structure and the demographic processes that determine population growth. Vital rates, such as recruitment and survival, vary spatially and temporally in response to environmental conditions, in turn influencing assemblage composition. The Southeast Florida Coral Reef Ecosystem Conservation Area (Coral ECA) is a high-latitude reef system offshore of a heavily urbanized coastline. Consecutive heat stress events, stony coral tissue loss disease (SCTLD), and Hurricane Irma caused significant declines in stony coral cover and density from 2014 to 2018. The recovery potential of stony coral assemblages is influenced by their composition, the size structure of the remnant populations, and population growth during inter-disturbance periods. To assess the viability of the remaining stony coral assemblages in the Coral ECA, we quantified variation in stony coral recruit density, abundance, size structure, and assemblage composition across depth and latitude at permanent sites over 3 years (2019–2022) when no disturbances occurred. We found spatial decoupling in recruit density, adult colony density, and cover that maintains a preponderance of small colonies and skewed size structure. At sites close to shore where recruit density was higher, there was limited evidence of survival and growth of recruits, while at sites where large colonies were sampled or cover was relatively high, there was limited recruitment. The majority (>75%) of recruits sampled were Siderastrea siderea, but size frequency distributions were positively skewed and the coefficient of variation was high, suggesting high recruit/juvenile colony mortality and little growth into larger size classes. Porites astreoides size structure was generally lognormal and mesokurtic, particularly closer to shore, suggesting a transition between size classes. Skewness decreased moving offshore in Montastraea cavernosa and S. siderea, suggesting a transition between size classes. Recruit and adult diversity also increased moving offshore, but recruits of most species were uncommon throughout the study area. We suggest that low recruitment and high mortality, particularly in small colonies and inshore, even during inter-disturbance periods, limit the population growth of stony coral assemblages in southeast Florida.

Century‐Long Records of Sedimentary Input on a Caribbean Reef From Coral Ba/Ca Ratios

AbstractCoral reef ecosystems are delicately balanced and are thus prone to disruption by stressors such as storms, disease, climate variability and natural disasters. Most tropical coral populations worldwide are now in rapid decline owing to additional anthropogenic pressures, such as global warming, ocean acidification and a variety of local stressors. One such problem is the addition of excess sediment and nutrients flux to reefs from increased soil erosion from land use changes. Here we present century‐long Ba/Ca records from two Siderastrea siderea colonies as a proxy for local riverine discharge and sediment flux to the southern Mesoamerican Barrier Reef System (MBRS). The coral colonies have linear extension trends, which can be seen as a first‐order indicator for coral health and response. The coral colony that exhibits a decline in linear extension rate from the forereef of the MBRS, mainly receives riverine input from Honduras, whilst the coral from the backreef, which does not exhibit a decline in extension rate, primarily receives riverine input from more sparsely populated regions of Belize. Coral Ba/Ca increased (>70%) through time in the forereef colony, while the backreef colony showed little long‐term increase in Ba/Ca over the last century. Our results suggest that increasing sediment supply may have played a role in the decline of forereef skeletal extension in the southernmost MBRS region, likely stemming from increasing land‐use changes in Honduras.

Gene expression plasticity facilitates acclimatization of a long-lived Caribbean coral across divergent reef environments

Local adaptation can increase fitness under stable environmental conditions. However, in rapidly changing environments, compensatory mechanisms enabled through plasticity may better promote fitness. Climate change is causing devastating impacts on coral reefs globally and understanding the potential for adaptive and plastic responses is critical for reef management. We conducted a four-year, three-way reciprocal transplant of the Caribbean coral Siderastrea siderea across forereef, backreef, and nearshore populations in Belize to investigate the potential for environmental specialization versus plasticity in this species. Corals maintained high survival within forereef and backreef environments, but transplantation to nearshore environments resulted in high mortality, suggesting that nearshore environments present strong environmental selection. Only forereef-sourced corals demonstrated evidence of environmental specialization, exhibiting the highest growth in the forereef. Gene expression profiling 3.5 years post-transplantation revealed that transplanted coral hosts exhibited profiles more similar to other corals in the same reef environment, regardless of their source location, suggesting that transcriptome plasticity facilitates acclimatization to environmental change in S. siderea. In contrast, algal symbiont (Cladocopium goreaui) gene expression showcased functional variation between source locations that was maintained post-transplantation. Our findings suggest limited acclimatory capacity of some S. siderea populations under strong environmental selection and highlight the potential limits of coral physiological plasticity in reef restoration.

Host density and anthropogenic stress are drivers of variability in dark spot disease in Siderastrea siderea across the Florida Reef Tract

Dark spot disease (DSD) was first reported within Florida's coral reefs in the 1990s but factors affecting its spatial distribution have not been well studied. We used a 14-yr (2005–2019) coral monitoring data set, utilizing 2242 surveys collected along Florida's coral reefs (about 530 linear km) to explore the spatial and temporal patterns of DSD occurrence. We built predictive statistical models to test for correlations between a suite of environmental and human impact factors and the occurrence of DSD in the reef coral, Siderastrea siderea. DSD in S. siderea is a chronic disease which occurred in all 14 yrs of the study. Annual DSD prevalence ranged from 0.45% to 4.4% and the proportion of survey sites that had DSD ranged from 4.8% to 30.9%. During the study period, DSD became more widespread across Florida's coral reefs and affected a higher proportion of S. siderea populations. Spatial variations in DSD correlated with environmental and human factors which together explained 64.4% of the underlying variability. The most influential factors were concentration of silica in the surface waters (a proxy for freshwater input), the total number of coral hosts, and distance to septic areas. DSD occurred in all regions, but the highest cumulative prevalence occurred in the upper Keys on reefs around major urban centers with links to coastal water discharges. Our results support the hypothesis that coastal water quality is a key component of DSD disease dynamics in Florida and provides motivation for addressing land–sea connections to ameliorate disease occurrence in the region.

Modern coral range expansion off southeast Florida falls short of Late Holocene baseline

As thermal stress and disease outbreaks decimate coral reefs throughout the tropics, there is growing evidence that higher latitude marine environments may provide crucial refuges for many at-risk, temperature-sensitive coral species. However, our understanding of how coral populations expand into new areas and sustain themselves over time is constrained by the limited scope of modern observations. Here, we provide geological insights into coral range expansions by reconstructing the composition of a Late Holocene-aged subfossil coral death assemblage on the southeast Florida reef tract and comparing it to modern reefs throughout the region. Our findings show that the Late Holocene coral assemblages were dominated by now critically endangered Acropora species between ~3500 and 1800 years before present, mirroring classic zonation patterns characteristic of healthy pre-1970s Caribbean reefs. In contrast, the modern reefs off southeast Florida are becoming increasingly dominated by stress-tolerant species like Porites astreoides and Siderastrea siderea despite modest expansions of Acropora cervicornis over the past several decades. Our results suggest that ongoing anthropogenic stressors, not present during the Late Holocene, are likely limiting the ability of modern higher latitude reefs in Florida to function as long-term climate refugia.

A Warming Southern Gulf of Mexico: Reconstruction of Anthropogenic Environmental Changes From a Siderastrea siderea Coral on the Northern Coast of Cuba

AbstractThe Gulf of Mexico is a vital region for the Atlantic Meridional Overturning Circulation (AMOC), that fuels the exchange of heat between the tropics and the polar regions. A weakening of the AMOC would have dire consequences for the planet. First observations and ocean models show that this process has already started. Very limited knowledge of the components that are part of the AMOC such as the Loop Current (LC) make it difficult to understand its dynamics as well as changes in strength or temperature since the onset of the Industrial Revolution. Currently, there are no continuous in situ sea surface temperature or salinity measurements for the southeastern Gulf of Mexico or reconstruction attempts for this region, showing the necessity for high‐resolution climate archives. A Siderastrea siderea coral core was retrieved from the northwestern Cuban coast and used as a sub‐seasonally resolved sea surface temperature and hydroclimate archive. The approach is based on skeletal δ18O, and trace and minor element contents show an increase in temperature over 160 years since 1845 of 2.6–3.3°C. A possible stagnation of the warming trend set in after the 1980s, indicating a potential weakening of the Loop Current. Impacts in sea surface salinity such as El Niño events in the Pacific region can still be detected in the Gulf of Mexico as decreases in salinity in 1998 from the reconstructed δ18OSW coral record. In situ measurements remain crucial to understand the dynamics in the LC and its influence on the AMOC.

Complex dynamics of coral gene expression responses to low pH across species.

Coral capacity to tolerate low pH affects coral community composition and, ultimately, reef ecosystem function. Low pH submarine discharges ('Ojo'; Yucatán, México) represent a natural laboratory to study plasticity and acclimatization to low pH in relation to ocean acidification. A previous >2-year coral transplant experiment to ambient and low pH common garden sites revealed differential survivorship across species and sites, providing a framework to compare mechanistic responses to differential pH exposures. Here, we examined gene expression responses of transplants of three species of reef-building corals (Porites astreoides, Porites porites and Siderastrea siderea) and their algal endosymbiont communities (Symbiodiniaceae) originating from low pH (Ojo) and ambient pH native origins (Lagoon or Reef). Transplant pH environment had the greatest effect on gene expression of Porites astreoides hosts and symbionts and P. porites hosts. Host P. astreoides Ojo natives transplanted to ambient pH showed a similar gene expression profile to Lagoon natives remaining in ambient pH, providing evidence of plasticity in response to ambient pH conditions. Although origin had a larger effect on host S. siderea gene expression due to differences in symbiont genera within Reef and Lagoon/Ojo natives, subtle effects of low pH on all origins demonstrated acclimatization potential. All corals responded to low pH by differentially expressing genes related to pH regulation, ion transport, calcification, cell adhesion and stress/immune response. This study demonstrates that the magnitude of coral gene expression responses to pH varies considerably among populations, species and holobionts, which could differentially affect acclimatization to and impacts of ocean acidification.

Stony coral tissue loss disease accelerated shifts in coral composition and declines in reef accretion potential in the Florida Keys

Outbreaks of coral disease have been a dominant force shaping western Atlantic coral-reef assemblages since the late 1970s. Stony coral tissue loss disease (SCTLD) is nonetheless having an unprecedented impact in the region. Whereas numerous studies over the last decade have worked to characterize this novel pathogen and its impacts on coral populations, few have quantified its functional effects on reef ecosystems. Of particular importance is how SCTLD may be impacting the essential reef-accretion process and the myriad ecosystem services it supports. Here, we evaluated the impact of SCTLD on reef-accretion potential by estimating carbonate budgets and taxon-level carbonate production at 43 sites throughout the Florida Keys from 2016−2022. Average regional reef-accretion potential declined from an already low, but positive rate of 0.30 ± 0.16 mm y-1 (mean ± standard error) in 2016 before the disease was first observed, to a state of accretionary stasis (0.08 ± 0.12 mm y-1) by 2022. This 70% relative decline in reef-accretion potential was driven by the loss of reef-building corals, with significant decreases in carbonate production by massive taxa including Colpophyllia natans, Montastraea cavernosa, Pseudodiploria strigosa, Orbicella spp., and Siderastrea siderea, and increasing contributions from less susceptible, weedy taxa including Millepora spp., Agaricia spp., and Porites astreoides. In general, changes in taxon-level carbonate production following the SCTLD outbreak mirror long-term shifts in reef assemblages in response to previous stressors. One striking exception, however, is S. siderea, which had become increasingly dominant in recent decades, but declined significantly in response to SCTLD. Overall, by further decimating the already depauperate reef-building coral populations in the Florida Keys, SCTLD has caused a functionally significant shift in the composition of Florida’s coral-reef assemblages and accelerated the loss of regional reef-building capacity. The dire impacts of the disease in south Florida may serve as an early warning that the persistence of the invaluable ecological and socioeconomic functions coral reefs provide will be increasingly threatened throughout the western Atlantic in the aftermath of SCTLD.

Coral Sr‐U Thermometry Tracks Ocean Temperature and Reconciles Sr/Ca Discrepancies Caused by Rayleigh Fractionation

AbstractUnderstanding climate change at the spatiotemporal scales necessary to improve climate projections requires proxy records that complement sparse and often contradictory observational temperature data sets. Massive long‐lived corals have tremendous potential in this regard, continuously recording information about ocean conditions as they grow. Nevertheless, extracting accurate ocean temperatures from corals is challenging because factors other than temperature influence skeletal chemistry. Here, we tested the ability of the coral Sr‐U thermometer to accurately capture annual sea surface temperatures (SSTs) in the subtropical Atlantic, where year‐to‐year temperatures vary by ∼1°C. Using laser ablation inductively coupled plasma mass spectrometry (LA‐ICP‐MS), we generated sufficient U/Ca – Sr/Ca pairs from a slow‐growing (1−2 mm/yr) Siderastrea siderea coral to calculate annual Sr‐U values. With the fine‐scale spatial resolution attained using the laser, skeleton accreted during both fast and slow growing times of the year was represented in our sampling. The resulting 30‐year‐long Sr‐U record tracked the amplitude and timing of annual SST to within ±0.2°C of observations (r = −0.71), whereas the Sr/Ca record did not (r = 0.23). Furthermore, Sr‐U corrected for Sr/Ca offsets among adjacent skeletal elements approximately 1 mm apart. These offsets are equivalent to differences of 2–3°C if typical Sr/Ca–SST calibrations are applied. Our observations indicate that Sr‐U can accurately constrain decadal‐to‐multidecadal variability and secular SST trends in regions where this information is urgently needed.

Coral assemblage structure and condition of the San Felipe Keys National Park, Cuba

Coral reefs provide ecosystem services to humans, essential to protection through different conservation strategies. However, planning and implementing marine conservation management actions must be based on the best available science. Information gaps have resulted in limited knowledge of conservation priorities and a weak conflict resolution and decision-making capacity. The San Felipe Keys National Park (SFKNP), located in the southwestern region of Cuba, is an understudied area with 40 km long forereefs, providing services mainly associated with fisheries (lobster and finfish). This work analyzed the hermatypic coral assemblage structure and condition within the SFKNP and the influence of geographic and environmental factors in its variation. Using stereo videos, we assessed nine coral reef sites between 2013 and 2015, generating 597 transects, in which 10341 colonies, 46 species, and 17 functional entities were found. The dominant species (Siderastrea siderea, Porites astreoides, Agaricia agaricites, and Orbicella faveolata) are mainly massive species with higher depth range, and that visibility in the bottom and habitat heterogeneity explained 57% of coral assemblages’ variation. Besides, the percentage of living coral cover (10%–15%), the prevalence of small-sized colonies (22 cm average), and the high incidence of recent mortality (2%–8% of colonies) indicate the presence of environmental stressors in the SFKNP, such as water turbidity, generated by the natural runoff from the Gulf of Batabanó. These results highlight the importance of enhancing the awareness of the competent authorities and promoting integrated management of the entire western region of the Gulf of Batabanó.

Caribbean scleractinian corals exhibit highly variable tolerances to acute hypoxia

IntroductionClimate change, and the increase in sea surface temperature, is exacerbating ocean deoxygenation because of the inherent property of seawater to sequester less dissolved gas, such as oxygen, at warmer temperatures. While most coral reef studies focus on the effects of thermal stress and ocean acidification, few studies acknowledge the threat of hypoxia. Hypoxia is traditionally defined as 6.3 kPa (2 mg L-1 O2), however, a universal hypoxia threshold is not useful given the vast range of responses among marine organisms. The range of metabolic responses and tolerances to hypoxia are unknown for Caribbean coral species and their algal symbionts.ObjectiveHere, we quantified the spectrum of acute hypoxia tolerances and the range of metabolic responses of six ecologically and structurally important Caribbean coral species (Acropora cervicornis, Siderastrea radians, Siderastrea siderea, Porites astreoides, Porites porites, and Orbicella faveolata) and their algal symbionts (Symbiodinium, Breviolum, and Durusdinium spp.).MethodsA total of 24 coral fragments (4 individuals per species) were exposed to 10 distinct oxygen concentrations ranging from normoxia (20.38 kPa) to severe hypoxia (3.3 kPa). We used intermittent flow respirometry to measure coral host respiration in the dark and algal symbiont photosynthesis in the light at each oxygen level. We determined a line of best fit for the metabolic rate vs. PO2 data and calculated the critical oxygen partial pressure (PO2 crit), a method that has not been tested on symbiotic species.ResultsCoral species and their algal symbionts measured here displayed a wide range of hypoxia tolerances. For the coral hosts, PO2 crit values differed roughly two-fold ranging from 5.74 kPa to 16.93 kPa, and for the algal symbionts, PO2 crit values differed roughly three-fold ranging from 3.9 kPa to 11.3 kPa.DiscussionThese results should be regarded as a first step to characterizing the metabolic response and acute tolerance of multiple coral hosts and algal symbionts to a wide range of oxygen concentrations. Given that some PO2 crit values were above the generally accepted hypoxia threshold, these results have implications for the community composition of reefs under a rapidly changing climate and can guide purposeful reef restoration.

The Flower Garden Banks Siderastrea siderea coral as a candidate Global boundary Stratotype Section and Point for the Anthropocene series

The proposed Anthropocene Global Boundary Stratotype Section and Point (GSSP) candidate site of West Flower Garden Bank (27.8762°N, 93.8147°W) is an open ocean location in the Gulf of Mexico with a submerged coral reef and few direct human impacts. Corals contain highly accurate and precise (<±1 year) internal chronologies, similar to tree rings, and their exoskeletons are formed of aragonite and can be preserved in the rock record. Here we present results from a large Siderastrea siderea coral (core 05WFGB3; 1755–2005 CE) sampled with annual and monthly resolutions that show clear markers of global and regional human impacts. Atmospheric nuclear bomb testing by-products (14C, 239+240Pu) have clear increases in this coral starting in 1957 for 14C and the first increase in 1956 for 239+240Pu (potential bases for the Anthropocene GSSP). Coral δ13C declined especially after 1956 consistent with the Suess effect resulting from the burning of fossil fuels. Coral skeletal δ15N starts to increase in 1963 corresponding with the increase in agricultural fertilizers. Coral Hg concentrations (1933–1980) loosely track fluctuations in industrial pollution and coral Ba/Ca increases from 1965–1983 when offshore oil operations expand after 1947. Coral temperature proxies contain the 20th-century global warming trend whereas coral growth declines during this interval.

Cryptic Diversity of Black Band Disease Cyanobacteria in Siderastrea siderea Corals Revealed by Chemical Ecology and Comparative Genome-Resolved Metagenomics.

Black band disease is a globally distributed and easily recognizable coral disease. Despite years of study, the etiology of this coral disease, which impacts dozens of stony coral species, is not completely understood. Although black band disease mats are predominantly composed of the cyanobacterial species Roseofilum reptotaenium, other filamentous cyanobacterial strains and bacterial heterotrophs are readily detected. Through chemical ecology and metagenomic sequencing, we uncovered cryptic strains of Roseofilum species from Siderastrea siderea corals that differ from those on other corals in the Caribbean and Pacific. Isolation of metabolites from Siderastrea-derived Roseofilum revealed the prevalence of unique forms of looekeyolides, distinct from previously characterized Roseofilum reptotaenium strains. In addition, comparative genomics of Roseofilum strains showed that only Siderastrea-based Roseofilum strains have the genetic capacity to produce lasso peptides, a family of compounds with diverse biological activity. All nine Roseofilum strains examined here shared the genetic capacity to produce looekeyolides and malyngamides, suggesting these compounds support the ecology of this genus. Similar biosynthetic gene clusters are not found in other cyanobacterial genera associated with black band disease, which may suggest that looekeyolides and malyngamides contribute to disease etiology through yet unknown mechanisms.

Decadal-scale variation in coral calcification on coral-depleted Caribbean reefs

Over recent decades, many Caribbean reefs have transitioned to states where stony corals are no longer spatially dominant. The community dynamics culminating in this outcome are well known, but its functional implications remain incompletely understood. Here we used annual surveys from 1992 to 2019 to describe coral communities at 6 sites off St. John, US Virgin Islands, and explored how their ecological dynamics interact with their capacity to sustain estimated coral community calcification (G, kg CaCO3 m-2 yr-1). These communities had low coral cover (≤4.4%), but they changed through small and incremental events that summed to a slight decline in coral cover and changes in species assemblages favoring biotic homogenization and weedy species. Estimated coral G remained low, between 0.3 and 1.3 kg CaCO3 m-2 yr-1 (8.2-35.6 mmol CaCO3 m-2 d-1), but it differed among sites and years. The dominant contributors to G were Siderastrea siderea (1 site), Porites astreoides (1 site), and Orbicella spp. (4 sites), but higher G only occurred where Orbicella spp. remained relatively common; G dramatically declined at 1 site when the abundance of this genus decreased. These results suggest that some coral-depleted reefs may maintain low G that could be sufficient to avoid transitions into net negative budget states, provided that biological and physical erosion and dissolution of CaCO3 (not recorded here) are minimal. Further mortalities of the few coral species remaining on these reefs through disturbances like stony coral tissue loss disease would compromise this delicate production-erosion balance, and likely see transitions of such reefs into negative carbonate budget states.