Functional Side Chains Research Articles

Recognition and order of multiple sidechains by metal–organic framework enhances the separation of hexane isomers

AbstractPorous materials perform molecular sorting, separation and transformation by interaction between their framework structures and the substrates. Proteins also interact with molecules to effect chemical transformations, but rely on the precise sequence of the amino acid building units along a common polypeptide backbone to maximise their performance. Design strategies that positionally order sidechains over a defined porous framework to diversify the internal surface chemistry would enhance control of substrate processing. Here we show that different sidechains can be ordered over a metal–organic framework through recognition of their distinct chemistries during synthesis. The sidechains are recognised because each one forces the common building unit that defines the backbone of the framework into a different conformation in order to form the extended structure. The resulting sidechain ordering affords hexane isomer separation performance superior to that of the same framework decorated only with sidechains of a single kind. The separated molecules adopt distinct arrangements within the resulting modified pore geometry, reflecting their strongly differentiated environments precisely created by the ordered sidechains. The development of frameworks that recognize and order multiple sidechain functionality by conformational control offers tailoring of the internal surfaces within families of porous materials to direct interactions at the molecular level.

Polymer-Metal-Organic Frameworks (polyMOFs) Based on Tailor-Made Poly(alkenamer)s.

Polymeric linkers used to construct porous, crystalline polymer-metal-organic frameworks (polyMOFs) are predominantly based on macromolecules with metal-coordinating ligand units (e.g., 1,4-benzenedicarboxylic acid, H2bdc) included in the primary polymer backbone. Polymers with ligand units as pendants or dangling side chain substituents have been far less explored for the synthesis of polyMOFs, despite the fact that such systems may have distinct properties and could take advantage of a variety of chain polymerization methods. Prevailing reports are based on nonliving polymerized linkers with H2bdc pendants that generated polyMOFs with key shortcomings in controlling the polymerization, tailoring polymeric linker composition and polyMOF properties, accessing porosity, etc. Herein, polymers containing H2bdc units as pendants were designed and synthesized via controlled olefin-metathesis polymerization. These poly(alkenamer)s were subsequently assembled into porous, crystalline networks with an isoreticular MOF (IRMOF) lattice topology. These polymer architectures and polymerization methodologies provide access to the formation of polyMOFs with tailored characteristics, including controlled composition, narrow dispersity, and side chain functionalization.

Preparation and characterization of cardanol based vinyl ester resins as cross‐linker units

AbstractIn this study, two cardanol based epoxidized resins, NC514 with less than two epoxies per molecule and side chain epoxidized cardanol glycidyl ether (SCECGE) with approximately 2.45 epoxies (1.0 phenolic+1.45 aliphatic epoxies) per molecule were methacrylated. The methacrylated versions of cardanol based NC514 (NC514VE) and SCECGE (SCECGEVE) epoxy resins were used as cross‐linker units in vinyl ester formulations with methacrylated lauric acid (MFA) and styrene (ST) as bio‐based and synthetic based reactive diluents respectively, at various concentrations (10–40 wt%). The curing reactions of the resins were studied via FTIR and the extent of polymerization was determined for different cross‐linker units in the presence of ST and MFA. Our mechanical and thermomechanical characterizations showed that VER formulations prepared with cardanol based SCECGEVE cross‐linker unit have significantly improved properties than the samples prepared with commercially available counterpart NC514VE using either reactive diluent. These properties of SCECGEVE were also comparable with to that of methacrylated petroleum‐based diglycidyl ether of bisphenol A vinyl ester (DGEBAVE) formulations unlike NC514VE formulations due to more effective side chain functionalization and cross‐linking.

Experimental and numerical study of the decomposition, product spectrum, and sooting properties of adamantane fuels

This work combined experimental measurements with two theoretical approaches, reactive Molecular Dynamics (MD) simulations and Quantum Mechanics (QM) calculations, to investigate the combustion and sooting properties of three adamantane fuels, adamantane (AD), 1,3-dimethyl-adamantane (DMAD), and 1-ethyl-adamantane (EAD). These fuels were selected since the adamantane fuel family can potentially be used as sustainable aviation fuels and comparing these fuels would reveal the effects of side chain on their combustion and sooting properties. We determined the bond dissociation energies of the three test fuels using QM calculations and found that the functionalized side chains have the weakest bonds and their presence only slightly affects the bond strength in the AD multi-cyclic core. We performed pyrolysis simulations for all three fuels using ReaxFF-based MD simulations and found that DMAD and EAD have higher decomposition rates than AD and also generate more high-molecular-weight products. For all three fuels, these large products were observed to contribute significantly to hydrocarbon growth processes, which lead to large soot nucleating species and even soot-like structures. A higher yield of such soot nucleating compounds was found during the pyrolysis of DMAD and EAD than AD since the decomposition products of DMAD and EAD are more branched and those of AD have mostly straight chains. These theoretical analyses were supported by experimental measurements of yield-based sooting tendencies, which suggest that DMAD and EAD are sootier than AD and that all three fuels are sootier than standard alkane jet fuel surrogates but less sooty than jet fuel aromatic content.

Recognition and order of multiple sidechains by metal-organic framework enhances the separation of hexane isomers.

Porous materials perform molecular sorting, separation and transformation by interaction between their framework structures and the substrates. Proteins also interact with molecules to effect chemical transformations, but rely on the precise sequence of the amino acid building units along a common polypeptide backbone to maximise their performance. Design strategies that positionally order sidechains over a defined porous framework to diversify the internal surface chemistry would enhance control of substrate processing. Here we show that different sidechains can be ordered over a metal-organic framework through recognition of their distinct chemistries during synthesis. The sidechains are recognised because each one forces the common building unit that defines the backbone of the framework into a different conformation in order to form the extended structure. The resulting sidechain ordering affords hexane isomer separation performance superior to that of the same framework decorated only with sidechains of a single kind. The separated molecules adopt distinct arrangements within the resulting modified pore geometry, reflecting their strongly differentiated environments precisely created by the ordered sidechains. The development of frameworks that recognise andorder multiple sidechain functionality by conformational control offers tailoring of the internal surfaces within families of porous materials to direct interactions at the molecular level.

Coupling and Decoupling between Stickers and Backbones in Associating Polymers with Terminally Functionalized Side Chains

Coupling and Decoupling between Stickers and Backbones in Associating Polymers with Terminally Functionalized Side Chains

Construction of charge-reversible coordination-crosslinked spherical nucleic acids to deliver dual anti-cancer genes and ferroptosis payloads

Spherical nucleic acids (SNAs) are nanostructures with the DNA arranged radially on the surface, thus allowing specific binding with cancer cells expressing high levels of scavenger receptor-A to enhance cellular uptake. However, conventional carriers for SNAs are cytotoxic, not degradable and difficult to deliver multiple payloads. In this study, we developed charge-reversible coordination-crosslinked SNAs to deliver dual anti-cancer genes and ferroptosis payload for anti-cancer purposes. To this end, we modified poly(lactic acid) (PLA) with functionalized side chains to allow its binding with antisense oligonucleotides (ASOs) and siRNA, annealed two single-stranded RNAs to obtain double-stranded RNA, and introduced a polyethylene glycol (PEG) shell to enhance the circulation time. Additionally, the ferroptosis payload imidazole was coordinated with iron ions as a core-crosslinked group to enhance the stability of SNAs and efficiency to kill cancer cells. We demonstrated that this novel nanocomplex efficiently internalized and killed CT-26 cells in vitro. In vivo data confirmed that the dual gene delivery system successfully targeted CT-26 tumors in tumor-bearing BALB/c mice, and exhibited strong tumor suppression ability, without inducing adverse toxic effects. Taken together, our dual gene therapy system offered an enhanced anti-tumor solution by simultaneously delivering dual anti-cancer genes and ferroptosis payload in tumor microenvironment.

Biological Properties of Oleanolic Acid Derivatives Bearing Functionalized Side Chains at C-3.

Triterpene acids are a class of pentacyclic natural carboxylic compounds endowed with a variety of biological activities including antitumor, antimicrobial, and hepatoprotective effects. In this work, several oleanolic acid derivatives were synthesized by structurally modifying them on the C-3 position. All synthesized derivatives were evaluated for possible antibacterial and antiviral activity, and among all the epimers, 6 and 7 demonstrated the best biological activities. Zone-of-inhibition analyses were conducted against two strains, E. coli as a Gram-negative and S. aureus as a Gram-positive model. Subsequently, experiments were performed using the microdilution method to determine the minimum inhibitory concentration (MIC). The results showed that only the derivative with reduced hydrogen bonding ability on ring A possesses remarkable activity toward E. coli. The conversion from acid to methyl ester implies a loss of activity, probably due to a reduced affinity with the bacterial membrane. Before the antiviral activity, the cytotoxicity of triterpenes was evaluated through a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. Samples 6 and 7 showed less than 50% cytotoxicity at 0.625 and 1 mg/mL, respectively. The antiviral activity against SARS-CoV-2 and PV-1 did not indicate that triterpene acids had any inhibitory capacity in the sub-toxic concentration range.

Deciphering and Integrating Functionalized Side Chains for High Ion‐Conductive Elastic Ternary Copolymer Solid‐State Electrolytes for Safe Lithium Metal Batteries

AbstractA critical challenge in solid polymer lithium batteries is developing a polymer matrix that can harmonize ionic transportation, electrochemical stability, and mechanical durability. We introduce a novel polymer matrix design by deciphering the structure‐function relationships of polymer side chains. Leveraging the molecular orbital‐polarity‐spatial freedom design strategy, a high ion‐conductive hyperelastic ternary copolymer electrolyte (CPE) is synthesized, incorporating three functionalized side chains of poly‐2,2,2‐Trifluoroethyl acrylate (PTFEA), poly(vinylene carbonate) (PVC), and polyethylene glycol monomethyl ether acrylate (PEGMEA). It is revealed that fluorine‐rich side chain (PTFEA) contributes to improved stability and interfacial compatibility; the highly polar side chain (PVC) facilitates the efficient dissociation and migration of ions; the flexible side chain (PEGMEA) with high spatial freedom promotes segmental motion and interchain ion exchanges. The resulting CPE demonstrates an ionic conductivity of 2.19×10−3 S cm−1 (30 °C), oxidation resistance voltage of 4.97 V, excellent elasticity (2700 %), and non‐flammability. The outer elastic CPE and the inner organic–inorganic hybrid SEI buffer intense volume fluctuation and enable uniform Li+ deposition. As a result, symmetric Li cells realize a high CCD of 2.55 mA cm−2 and the CPE‐based Li||NCM811 full cell exhibits a high‐capacity retention (~90 %, 0.5 C) after 200 cycles.

Deciphering and Integrating Functionalized Side Chains for High Ion-Conductive Elastic Ternary Copolymer Solid-State Electrolytes for Safe Lithium Metal Batteries.

A critical challenge in solid polymer lithium batteries is developing a polymer matrix that can harmonize ionic transportation, electrochemical stability, and mechanical durability. We introduce a novel polymer matrix design by deciphering the structure-function relationships of polymer side chains. Leveraging the molecular orbital-polarity-spatial freedom design strategy, a high ion-conductive hyperelastic ternary copolymer electrolyte (CPE) is synthesized, incorporating three functionalized side chains of poly-2,2,2-Trifluoroethyl acrylate (PTFEA), poly(vinylene carbonate) (PVC), and polyethylene glycol monomethyl ether acrylate (PEGMEA). It is revealed that fluorine-rich side chain (PTFEA) contributes to improved stability and interfacial compatibility; the highly polar side chain (PVC) facilitates the efficient dissociation and migration of ions; the flexible side chain (PEGMEA) with high spatial freedom promotes segmental motion and interchain ion exchanges. The resulting CPE demonstrates an ionic conductivity of 2.19×10-3 S cm-1 (30 °C), oxidation resistance voltage of 4.97 V, excellent elasticity (2700 %), and non-flammability. The outer elastic CPE and the inner organic-inorganic hybrid SEI buffer intense volume fluctuation and enable uniform Li+ deposition. As a result, symmetric Li cells realize a high CCD of 2.55 mA cm-2 and the CPE-based Li||NCM811 full cell exhibits a high-capacity retention (~90 %, 0.5 C) after 200 cycles.

Novel Brassinosteroid Analogues with 3,6 Dioxo Function, 24-Nor-22(S)-Hydroxy Side Chain and p-Substituted Benzoate Function at C-23-Synthesis and Evaluation of Plant Growth Effects.

Brassinosteroids (BRs) are an important group of polyhydroxylated naturally occurring steroidal phytohormones found in the plant kingdom in extremely low amounts. Due to the low concentrations in which these compounds are found, much effort has been dedicated to synthesizing these compounds or their structural analogs using natural and abundant sterols. In this work, we report the synthesis of new brassinosteroid analogs obtained from hyodeoxycholic acid, with a 3,6 dioxo function, 24-Nor-22(S)-hydroxy side chain and p-substituted benzoate function at C-23. The plant growth activities of these compounds were evaluated by two different bioassays: rice lamina inclination test (RLIT) and BSI. The results show that BRs' analog with p-Br (compound 41f) in the aromatic ring was the most active at 1 × 10-8 M in the RLIT and BSI assays. These results are discussed in terms of the chemical structure and nature of benzoate substituents at the para position. Electron-withdrawing and size effects seems to be the most important factor in determining activities in the RLIT assay. These results could be useful to propose a new structural requirement for bioactivity in brassinosteroid analogs.

Strategy for pattern recognition‐driven optical chemosensing based on polythiophene

AbstractPolythiophenes (PTs) with flexible backbones possess inherent polymer behaviors, including molecular wire effects and dynamic structural changes in π‐conjugated systems. The chemical sensing at the functionalized side chains can manipulate such polymer characteristics, resulting in various optical patterns depending on the analyte structures and their concentrations. The unique optical patterns derived from polymer properties contribute to group categorization over a wide concentration range for pattern recognition. This review aims to provide a concise overview of the potential of PT chemosensor arrays using actual sensing examples in environmental monitoring, medical diagnostics, and food analysis. Furthermore, this review summarizes the methodologies that use polymer gels to realize practical chemosensor array chips for onsite analysis.

Copolymerization of β-Butyrolactones into Functionalized Polyhydroxyalkanoates Using Aluminum Catalysts: Influence of the Initiator in the Ring-Opening Polymerization Mechanism.

Within bioplastics, natural poly(3-hydroxybutyrate) (PHB) stands out as fully biocompatible and biodegradable, even in marine environments; however, its high isotacticity and crystallinity limits its mechanical properties and hence its applications. PHB can also be synthesized with different tacticities via a catalytic ring-opening polymerization (ROP) of rac-β-butyrolactone (BBL), paving the way to PHB with better thermomechanical and processability properties. In this work, the catalyst family is extended based on aluminum phenoxy-imine methyl catalyst [AlMeL2], that reveals efficient in the ROP of BBL, to the halogeno analogous complex [AlClL2]. As well, the impact on the ROP mechanism of different initiators is further explored with a particular focus in dimethylaminopyridine (DMAP), a hardly studied initiator for the ROP of BBL. A thorough mechanistic study is performed that evidences the presence of two concomitant DMAP-mediated mechanisms, that lead to either a DMAP or a crotonate end-capping group. Besides, in order to increase the possibilities of PHB post-polymerization functionalization, the introduction of a side-chain functionality is explored, establishing the copolymerization of BBL with β-allyloxymethylene propiolactone (BPLOAll), resulting in well-defined P(BBL-co-BPLOAll) copolymers.

Synthesis, Characterization and Photovoltaic Properties of Polyplatinaynes with Side Chain Functionalization by Different Electron-Accepting Group

Four new solution-processable platinum-containing polyynes functionalized with triphenylamine backbone and different acceptor fragment in the side chain were synthesized and characterized by spectroscopic, thermal and optical methods. The main- and side-chains show different absorption features in the solar spectrum, resulting in broad absorption coverage of the whole visible region. By changing the acceptor group in the side chain, the photophysical properties including energy levels, absorption wavelength and bandgap of the polymers were finely tuned. As the strength of electron acceptor is increased, the power conversion efficiency (PCE) of organic polymer solar cells fabricated with these polymers as electron donor and (6,6)-phenyl-C61-butyric acid methyl ester (PCBM) as electron acceptor was increased. PCE of 1.35% can be obtained from solar cell based on the polyplatinayne with the dicyanovinyl side group under illumination of an AM 1.5 solar cell simulator in a 1:4 (polymer:PCBM) blend ratio.Graphical

Ester Side Chain Functionalization Enhances Mechanical Properties of Poly(3-Hexylthiophene) while Maintaining High Hole Mobility

Ester Side Chain Functionalization Enhances Mechanical Properties of Poly(3-Hexylthiophene) while Maintaining High Hole Mobility

Creating Anti‐Biofouling Surfaces by Degradable Main‐chain Polyphosphoester Polymer Brushes

AbstractThe implementation of polymer brush coatings has proven crucial in biomedical and biotechnological applications for controlling biological interactions. Despite the extensive research and use of synthetic polymer coatings, concerns regarding their long‐term non‐biodegradability have arisen. This issue is significant as non‐degradable polymers can lead to complications such as inflammatory responses and bioaccumulation, highlighting the need for polymers that degrade in a controlled manner. To address this, polyphosphonate brushes are synthesized as anti‐biofouling coatings on silicon surfaces via controlled surface‐initiated organocatalytic ring‐opening polymerization (SI‐ROP) of cyclic phospholanes. 2‐Ethyl‐2‐oxo‐1,3,2‐dioxaphospholane and 2‐hexyl‐2‐oxo‐1,3,2‐dioxaphospholane are chosen as the monomers to prepare hydrophilic and hydrophobic brushes with thicknesses up to 55 nm, with a proven degradability in aqueous media. In addition, protein adsorption, bacterial adhesion, and biofilm formation are investigated as a function of the polyphosphonate side chain. Compared to non‐coated surfaces and polyester brushes, hydrophilic poly(2‐ethyl‐2‐oxo‐1,3,2‐dioxaphospholane) brushes have an enhanced resistance toward fouling of albumin, fibrinogen, and diluted human serum proteins, as well as toward Escherichia coli and Staphylococcus aureus bacteria. The stability and anti‐biofouling performance of hydrophilic polyphosphonate brushes position them as an attractive option as degradable materials for anti‐biofouling matrices on medical devices and/or lubricious coatings for artificial implant technologies.

Recent Advancement in the Fabrication of Colorimetric and Fluorometric Sensors for the Detection of Basic Amino Acids

Abstract:: Due to the biological importance of amino acids, the development of optical probes for these compounds has become a popular research topic in recent years. The amino acid fluorescence or colorimetric sensors are organized according to the reactions the amino acids go through and the related structural classification. Works on reaction-based chemosensors are categorized as either imine formation, Michael addition, thiazinane or thiazolidine formation, cleavage of a sulfonate ester, cleavage of a disulfide, metal complexes-displace coordination, or other mechanisms depending on the mechanisms between sensors and amino acids. Amino acids (AA), which comprise most proteins, are small molecules with a wide range of functional side-chain groups. Amino acids, therefore, have a variety of roles in physiological processes. Histidine (His), a member of this family, is required for tissue growth and repair as well as for weight gain. Lysine (Lys), another member of this family, is intimately linked to the Krebs-Henseleit cycle and polyamine synthesis, and an adequate amount of lysine in the diet is necessary for animals' metabolic processes and weight gain. Because it controls the transfer of metal elements in biological bases, tryptophan (Trp) is crucial to biological processes like protein synthesis, animal growth, and plant development. The majority of proteins are composed of amino acids (AA), which are tiny molecules with a variety of functional side chain groups. As a result, amino acids play a number of different roles in physiological processes. This family member's histidine (His) is necessary for weight gain, tissue growth, and repair. Another member of this family, lysine (Lys), is crucial for the Krebs-Henseleit cycle and polyamine production, and animals' metabolic activities and weight gain depend on appropriate lysine intake. Tryptophan (Trp) is an essential component of biological processes like protein synthesis, animal growth, and plant development because it regulates the transfer of metal elements in biological bases. Numerous attempts have been made to create new procedures for amino acid analysis as a result of the rising focus on human health, disease diagnosis, and therapy. Currently, spectroscopic, chromatographic, or electrochemical analytical methods are most frequently employed to identify and characterize amino acids. However, each method has certain disadvantages, such as the need for equipment and trained personnel, operational simplicity, analytical cost, test speed, and detection. Based on the important distinguishing characteristics of various amino acids to date, much research has been done on optical probes using indicator-displacement tests, metal complex coordination, particular interactions between probes and amino acids, and other techniques. We further subdivided the reaction-based probes into the following groups: production of imines, Michael addition, thiazinane or thiazolidine, cleavage of sulfonate ester, cleavage of disulfide, and others. Metal complexes-displace coordination. Due to some amino acids' similarity in structure and reactivity, it is still challenging to develop sensors that can selectively and sensitively identify amino acids from one another, such as the three biological thiols Cys, Hcy, and GSH. Specific reactions between probes and amino acids and other techniques have been extensively researched based on the significant characteristic features of diverse amino acids to date. We further divided the reaction-based probes into the following categories: metal complexes-displace coordination, imine creation, Michael addition, thiazinane or thiazolidine formation, cleavage of a sulfonate ester, cleavage of a disulfide; and others.

Emissive brightening in molecular graphene nanoribbons by twilight states

Carbon nanomaterials are expected to be bright and efficient emitters, but structural disorder, intermolecular interactions and the intrinsic presence of dark states suppress their photoluminescence. Here, we study synthetically-made graphene nanoribbons with atomically precise edges and which are designed to suppress intermolecular interactions to demonstrate strong photoluminescence in both solutions and thin films. The resulting high spectral resolution reveals strong vibron-electron coupling from the radial-breathing-like mode of the ribbons. In addition, their cove-edge structure produces inter-valley mixing, which brightens conventionally-dark states to generate hitherto-unrecognised twilight states as predicted by theory. The coupling of these states to the nanoribbon phonon modes affects absorption and emission differently, suggesting a complex interaction with both Herzberg–Teller and Franck– Condon coupling present. Detailed understanding of the fundamental electronic processes governing the optical response will help the tailored chemical design of nanocarbon optical devices, via gap tuning and side-chain functionalisation.

Thermal Cross-Linking preparation of Aqueous-Based cathodic films for enhanced stability in organic electrochromic devices

Four derivatives of naphthalene diimide (NDI) small molecules with different polar functional side chains were designed and synthesized. The corresponding polymers, PNDI-5C/8C/DC/TC, were further prepared by thermal cross-linking method and utilized to fabricate organic electrochromic films. All of the PNDI-5C/8C/DC/TC films exhibit solvent resistance characteristics in commonly used organic solvents and water, and they possess varied surface energies, reduction voltages and electrochemical stabilities in aqueous electrolytes. The PNDI-TC film, which has the highest hydrophilicity, has a high optical contrast of 43.3 % with a short coloring time of 1.9 s and bleaching time of 0.6 s. Most importantly, the performance of the organic electrochromic device based on PNDI-TC can maintain almost 100 % contrast after 1000 cycles, showing great potential in the application of aqueous-based organic electrochromic device.

High-Throughput Synthesis, Purification, and Application of Alkyne-Functionalized Discrete Oligomers.

The development of synthetic oligomers as discrete single molecular entities with accurate control over the number and nature of functional groups along the backbone has enabled a variety of new research opportunities. From fundamental studies of self-assembly in materials science to understanding efficacy and safety profiles in biology and pharmaceuticals, future directions are significantly impacted by the availability of discrete, multifunctional oligomers. However, the preparation of diverse libraries of discrete and stereospecific oligomers remains a significant challenge. We report a novel strategy for accelerating the synthesis and isolation of discrete oligomers in a high-throughput manner based on click chemistry and simplified bead-based purification. The resulting synthetic platform allows libraries of discrete polyether oligomers to be prepared and the impact of variables such as chain length, number, and nature of side chain functionalities and molecular dispersity on antibacterial behavior examined. Significantly, discrete oligomers were shown to exhibit enhanced activity with lower toxicity compared with traditional disperse samples. This work provides a practical and scalable methodology for nonexperts to prepare libraries of multifunctional discrete oligomers and demonstrates the advantages of discrete materials in biological applications.