Background: Approximately 90% of the world’s chickpea is grown under rainfed conditions where terminal drought is one of the major constraints limiting productivity. The need of short-duration, Fusarium wilt tolerant cultivars/elite lines and able to escape drought due to early maturity were required. Methods: The present investigation was carried out using 54 genotypes, generated from six diverse crosses, along with ten checks (resistant/tolerance, susceptible) were screened against drought and Fusarium wilt at Zonal Agricultural Research Station, Kalaburagi, Karnataka (Latitude: 17.36 and Longitude: 76.82) during crop season 2018-19. Result: The results revealed that higher PCV, GCV, heritability, percent genetic advance were exhibited by number of pods per plant and seed yield per plot, whereas lower PCV, GCV recorded for days to 50% flowering and days to maturity in both normal and late sown conditions. The advanced breeding lines viz., KCD-8, KCD-24, KCD-28, KCD-32, KCD-37 and KCD-53 were identified as drought tolerant lines based on drought tolerant indices (viz., MP, YSI, DTE and DSI). The lines KCD-48 and KCD-32 were identified as Fusarium wilt resistance with lowest PDI of 1.47 and 2.46 respectively, as they were screened in wilt sick plot and further these were validated and confirmed the resistant alleles using two unpublished SNP markers (FW2_30366110 and FW2_30365816). The advanced breeding lines KCD-32 and KCD-37 were identified as drought tolerant and Fusarium wilt resistant.