To design a lightweight and high-performance absorber, this work introduced a novel three-dimensional interconnected SiC foam with double-layer hollow skeleton (3D-ISF), which was prepared by depositing SiC, pyrolytic carbon, and SiC layer on interconnected carbon foam, followed by oxidation of carbon. SEM results showed the interconnected hollow structure had been successfully synthesized, which was beneficial for microwave absorbing efficiency, and numerous columnar SiC defects were observed and played a critical role in the microwave absorption properties. The electromagnetic performances of 3D-ISF-I and 3D-ISF-II were investigated in depth. With the increase of thickness of SiC layer, 3D-ISF-II exhibited a better microwave absorption property, which could be ascribed to the higher impedance matching ratio (Zr) and attenuation constant (α). The optimum reflection loss value of 3D-ISF-II could reach −45.649 dB while that of 3D-ISF-I was just −32.070 dB. There is no doubt that the prepared materials have tunable microwave absorbing properties, which can promote the development of SiC-based absorbing materials to a certain extent. Finally, it was confirmed that the Zr played a dominant role in 3D-ISF, which provided practical guidance for the design of porous materials.