The selection of a target when training deep neural networks for speech enhancement is an important consideration. Different masks have been shown to exhibit different performance characteristics depending on the application and the conditions. This paper presents a comprehensive comparison of several different masks for noise reduction in cochlear implants. The study incorporated three well-known masks, namely the Ideal Binary Mask (IBM), Ideal Ratio Mask (IRM) and the Fast Fourier Transform Mask (FFTM), as well as two newly proposed masks, based on existing masks, called the Quantized Mask (QM) and the Phase-Sensitive plus Ideal Ratio Mask (PSM+). These five masks are used to train networks to estimate masks for the purpose of separating speech from noisy mixtures. A vocoder was used to simulate the behavior of a cochlear implant. Short-time Objective Intelligibility (STOI) and Perceptual Evaluation of Speech Quality (PESQ) scores indicate that the two new masks proposed in this study (QM and PSM+) perform best for normal speech intelligibility and quality in the presence of stationary and non-stationary noise over a range of signal-to-noise ratios (SNRs). The Normalized Covariance Measure (NCM) and similarity scores indicate that they also perform best for speech intelligibility/gauging the similarity of vocoded speech. The Quantized Mask performs better than the Ideal Binary Mask due to its better resolution as it approximates the Wiener Gain Function. The PSM+ performs better than the three existing benchmark masks (IBM, IRM, and FFTM) as it incorporates both magnitude and phase information.