Short Turnover Time Research Articles

Subunit Movements in Single Membrane-bound H+-ATP Synthases from Chloroplasts during ATP Synthesis

Subunit movements within the H(+)-ATP synthase from chloroplasts (CF(0)F(1)) are investigated during ATP synthesis. The gamma-subunit (gammaCys-322) is covalently labeled with a fluorescence donor (ATTO532). A fluorescence acceptor (adenosine 5'-(beta,gamma-imino)triphosphate (AMPPNP)-ATTO665) is noncovalently bound to a noncatalytic site at one alpha-subunit. The labeled CF(0)F(1) is integrated into liposomes, and a transmembrane pH difference is generated by an acid base transition. Single-pair fluorescence resonance energy transfer is measured in freely diffusing proteoliposomes with a confocal two-channel microscope. The fluorescence time traces reveal a repetitive three-step rotation of the gamma-subunit relative to the alpha-subunit during ATP synthesis. Some traces show splitting into sublevels with fluctuations between the sublevels. During catalysis the central stalk interacts, with equal probability, with each alphabeta-pair. Without catalysis the central stalk interacts with only one specific alphabeta-pair, and no stepping between FRET levels is observed. Two inactive states of the enzyme are identified: one in the presence of AMPPNP and one in the presence of ADP.

Stock, turnover time and accumulation of organic matter in bulk and density fractions of a Podzol soil

SummaryTemperate forest soils store large amounts of organic matter and are considered as net sinks for atmospheric carbon dioxide. Information about the sink strength and the turnover time of soil organic carbon (SOC) is required to assess the potential response of soils to climate change. Here we report on stocks, turnover times (TT) and accumulation of SOC in bulk soil and density fractions from genetic horizons of a Podzol in the Fichtelgebirge, Germany. Stocks of SOC, total nitrogen and exchangeable cations determined in nine quantitative soil pits strongly varied with stone content and thickness of horizons in both the organic layer and the mineral soil. On the basis of radiocarbon signatures, mean turnover times of 4, 9 and 133 years, respectively, were calculated for Oi, Oe and Oa horizons from three soil pits, using a non‐steady‐state model. The Oa horizons accumulated 4–8 g C m−2 year−1 whereas the Oi and Oe horizons were close to steady‐state during the past decade. Free particulate organic matter (FPOM) was the most abundant fraction in the Oa and EA horizons with TT of 70–480 years. In the B horizons, mineral associated organic matter (MAOM) dominated with over 40% of total SOC and had TT of 390–2170 years. In contrast to other horizons, MAOM in the Bsh and Bs horizon had generally faster TT than occluded particulate organic matter (OPOM), possibly because of sorption of dissolved organic carbon by iron and aluminium oxides/hydroxides. Our results suggest that organic horizons with relatively short turnover times could be particularly vulnerable to changes in climate or other disturbances.

Factors that elevate the internal radionuclide and chemical retention, dose and health risks to infants and children in a radiological-nuclear emergency

The factors that influence the dose and risk to vulnerable population groups from exposure and internal uptake of chemicals are examined and, in particular, the radionuclides released in chemical, biological, radiological, nuclear and explosive events. The paper seeks to identify the areas that would benefit from further research. The intake and body burdens of carbon and calcium were assessed as surrogates for contaminants that either act like or bind to hydrocarbons (e.g. tritium and (14)C) or bone-seeking radionuclides (e.g. (90)Sr and (239)Pu). The shortest turnover times for such materials in the whole body were evaluated for the newborn: 11 d and 0.5 y for carbon and calcium, respectively. However, their biokinetic behaviour is complicated by a particularly high percentage of the gut-absorbed dietary intake of carbon (approximately 16%) and calcium (approximately 100%) that is incorporated into the soft tissue and skeleton of the growing neonate. The International Commission on Radiological Protection dose coefficients (Sv Bq(-1)) were examined for 14 radionuclides, including 9 of concern because of their potential use in radiological dispersal devices. The dose coefficients for a 3-month-old are greater than those for adults (2-56 times more for ingestion and 2-12 times for inhalation). The age-dependent dose and exposure assessment of contaminant intakes would improve by accounting for gender and growth where it is currently neglected. Health risk is evaluated as the product of the exposure and hazard factors, the latter being about 10-fold greater in infants than in adults. The exposure factor is also approximately 10-fold higher for ingestion by infants than by adults, and unity for inhalation varying with the contaminant. Qualitative and quantitative physiological and epidemiological evidence supports infants being more vulnerable to cancer and neurological deficit than older children.

Soil phosphorus status and turnover in central‐European beech forest ecosystems with differing tree species diversity

SummaryProblems in phosphorus (P) nutrition of forest trees raise questions concerning the soil P concentrations, pools and turnover in forests. In addition, it is not clear if, and to what extent, tree species diversity has an influence on the soil P status and turnover. The aim of this study was to investigate the P status and turnover in beech (Fagus sylvatica L.) ‐dominated forest ecosystems on loess over limestone and to elucidate what role heterogeneities in tree species diversity would play. The soils of mixed species stands contained more organically bound P (710–772 kg ha−1) than those of pure beech stands (378 kg ha−1), whereas the inorganic P content differed little between the stand types. A large proportion (44–55%) of the total soil P was organically bound. This fraction was mainly dependent on the clay content of the soils and not on the tree diversity. The P input with leaf litter (1.4–2.1 kg ha−1 year−1) showed a tendency to increase with increasing diversity. The apparent P turnover times in the organic surface layers differed, with shorter turnover times in mixed species stands (2–3 years) than in pure beech stands (10 years). Possible explanations for the different turnover times were differences in the litter quality, interactions in mixed species litters and the soil pH and base saturation. Hence, the tree species mainly influence the apparent P turnover time in the organic surface layer, whereas the P concentrations and pools in the mineral soil are determined by the soil properties, particularly the clay content.

Soil microbial activity and biomass is stimulated by leguminous cover crops

AbstractThe leguminous cover cropsAtylosia scarabaeoides(L.) Benth.,Centrosema pubescensBenth., andPueraria phaseoloides(Roxb.) Benth., were grown in the interspaces of a 19 y–old coconut plantation and incorporated into the soil at the end of the monsoon season every year. At the end of the 12th year, soils from different depths were collected and analyzed for various microbial indices and their interrelationships. The objectives were to assess the effects of long‐term cover cropping on microbial biomass and microbial‐community structure successively down the soil profile.In general, total N (TN), organic C (OC), inorganic N, extractable P, and the levels of biological substratesviz., dissolved organic C (DOC) and N (DON), labile organic N (LON), and light‐fraction organic matter (LFOM) C and N decreased with depth at all the sites. Among sites, the cover‐cropped (CC) sites possessed significantly greater levels of TN, OC, DOC, DON, and LON compared to the control. Consequently, microbial biomass C (MBC), N (MBN), and P (MBP), CO2evolution, and ATP levels, in general, decreased with depth at all sites and were also significantly higher in the CC sites. Among the ratios of various microbial indices, the ratio of MBC to OC and metabolic quotient (qCO2) declined with depth. Higher MBC‐to‐OC ratios and largeqCO2levels in the surface soils could be ascribed to greater levels of readily degradable C content and indicated short turnover times of the microbial biomass. In contrast, the ratios of MBC to MBN and MBC to MBP increased with depth due to low N/P availability and relatively higher C availability in the subsoils. Cover cropping tended to enhance the ratios of MBC to OC, MBC to MBN, MBC to MBP, and ergosterol to MBC and decreased the ATP‐to‐MBC ratio at all depths. The relatively lower ATP‐to‐MBC ratios in the CC site, especially in the subsoil indicated microbial‐community structure possibly dominated by fungi. By converting the ergosterol content to fungal biomass, it was observed that fungi constituted 52%–63% of total biomass C at the CC site, but only 33%–40% of total biomass C at the control site. Overall, the study indicated that leguminous cover crops likeP. phaseoloidesorA. scarabaeoidessignificantly enhanced the levels of OC, N and microbial activity in the soils, even down to 50 cm soil depth.

A Novel Diagnostic Target in the Hepatitis C Virus Genome

BackgroundDetection and quantification of hepatitis C virus (HCV) RNA is integral to diagnostic and therapeutic regimens. All molecular assays target the viral 5′-noncoding region (5′-NCR), and all show genotype-dependent variation of sensitivities and viral load results. Non-western HCV genotypes have been under-represented in evaluation studies. An alternative diagnostic target region within the HCV genome could facilitate a new generation of assays.Methods and FindingsIn this study we determined by de novo sequencing that the 3′-X-tail element, characterized significantly later than the rest of the genome, is highly conserved across genotypes. To prove its clinical utility as a molecular diagnostic target, a prototype qualitative and quantitative test was developed and evaluated multicentrically on a large and complete panel of 725 clinical plasma samples, covering HCV genotypes 1–6, from four continents (Germany, UK, Brazil, South Africa, Singapore). To our knowledge, this is the most diversified and comprehensive panel of clinical and genotype specimens used in HCV nucleic acid testing (NAT) validation to date. The lower limit of detection (LOD) was 18.4 IU/ml (95% confidence interval, 15.3–24.1 IU/ml), suggesting applicability in donor blood screening. The upper LOD exceeded 10−9 IU/ml, facilitating viral load monitoring within a wide dynamic range. In 598 genotyped samples, quantified by Bayer VERSANT 3.0 branched DNA (bDNA), X-tail-based viral loads were highly concordant with bDNA for all genotypes. Correlation coefficients between bDNA and X-tail NAT, for genotypes 1–6, were: 0.92, 0.85, 0.95, 0.91, 0.95, and 0.96, respectively; X-tail-based viral loads deviated by more than 0.5 log10 from 5′-NCR-based viral loads in only 12% of samples (maximum deviation, 0.85 log10). The successful introduction of X-tail NAT in a Brazilian laboratory confirmed the practical stability and robustness of the X-tail-based protocol. The assay was implemented at low reaction costs (US$8.70 per sample), short turnover times (2.5 h for up to 96 samples), and without technical difficulties.ConclusionThis study indicates a way to fundamentally improve HCV viral load monitoring and infection screening. Our prototype assay can serve as a template for a new generation of viral load assays. Additionally, to our knowledge this study provides the first open protocol to permit industry-grade HCV detection and quantification in resource-limited settings.

Spatial-temporal variations in organic matter of the Sea of Azov

The spatial-temporal variations in the amount and biochemical composition of organic matter and the rates of its transformations in the ecosystems of the Russian part of the Sea of Azov are analyzed. Maximum OM concentrations are typical for Taganrog Bay. A characteristic feature of the Sea of Azov is a large proportion of particulate organic matter, which in summer in Taganrog Bay exceeded 35%. It is shown that not only the concentration of organic matter changes from season to season, but also its elementary (Corg, Norg, and Porg) and biochemical composition (proteins, carbohydrates, and lipids). The major biochemical compound of dissolved organic matter is shown to be carbohydrates (13–28%), and that of particulate matter is protein (44–51%). The hydrolytic (phosphatase and protease) and oxidation-reduction enzymes of electron-transport system demonstrate a high activity in summer. The estimated short turnover times of phosphates and protein suggest the rapid and complete utilization of organic matter in the Sea of Azov.

Dynamo action in complex flows: the quick and the fast

We consider the kinematic dynamo problem for a velocity field consisting of a mixture of turbulence and coherent structures. For these flows the dynamo growth rate is determined by a competition between the large flow structures that have large magnetic Reynolds number but long turnover times and the small ones that have low magnetic Reynolds number but short turnover times. We introduce the concept of a quick dynamo as one that reaches its maximum growth rate in some (small) neighbourhood of its critical magnetic Reynolds number. We argue that if the coherent structures are quick dynamos, the overall dynamo growth rate can be predicted by looking at those flow structures that have spatial and temporal scales such that their magnetic Reynolds number is just above critical. We test this idea numerically by studying 2.5-dimensional dynamo action which allows extreme parameter values to be considered. The required velocities, consisting of a mixture of turbulence with a given spectrum and long-lived vortices (coherent structures), are obtained by solving the active scalar equations. By using spectral filtering we demonstrate that the scales responsible for dynamo action are consistent with those predicted by the theory.

Spatial and temporal changes in the concentration of various phosphorus pools and their possible biogeochemical roles in the oligotrophic subtropical western North Pacific

Spatial and temporal variations in the concentration of phosphorus pools, including total phosphorus (TP), reactive phosphorus (RP), and nonreactive phosphorus (NP), were evaluated in subtropical regions (10–30°N) of the western North Pacific Ocean along 137°E through eight sampling periods from summer 2003 to spring 2005. RP was depleted at the water surface throughout our observation, varying less than 0.1 μM. The low concentration of RP was restricted to the surface mixing layer, and the concentration obviously increased concomitant with the decrease in water temperature. NP concentration was generally highest at the water surface and gradually decreased with increasing depth, but the depth and temporal variations were not definite compared with those of RP. NP was further divided into two fractions depending on its reactivity to specific ultraviolet (UV) irradiation. The concentration of UV labile organic phosphorus (UVL OP) was consistently low, being comparable with that of RP; their inventories from 0 to 50 m of RP and UVL OP fluctuated with in the range of 0.9–3.2 and 2.0–3.1 mmol m−2, respectively. As for incubation experiments in coastal waters using glucose‐1‐phosphate, which is fractionated into UVL OP, the UVL OP most likely has a short turnover time due to rapid utilization by microorganisms, indicating a significant role in the phosphorus cycle through the microbial food web. Inventory of the UV stable OP (UVS OP), on the other hand, varied nearly eightfold in the upper 50 m, and the temporal change in TP inventory was exclusively due to that of UVS OP.

Prediction of Flowfield and Acoustic Signature of a Coaxial Jet Using RANS-Based Methods and Large-Eddy Simulation

The feasibility of using large-eddy simulation (LES) for jet noise predictions has been discussed in several publications. The vast majority of these studies are, however, restricted to fairly simple geometries and moderate Reynolds numbers flows. Recent studies have shown that LES-based methods can be used for realistic flows and complex geometries with promising results. With continuously increased computer capacity and with the possibility to perform computations in parallel on PC-clusters, the possibility of using LES for industrial applications is increasing. However, although, the complexity of configurations for which LES may be used is approaching that of a real jet engine, due to high demands for computational power and long turn-over times LES is still not feasible for industrial use. For low-noise nozzle design, engineering tools with short turn-over time, accurate enough for prediction of noise trends are therefore needed. In the development of such methods, LES can provide data suitable for method validation. In the present work, the high-subsonic flow in an axisymmetric coaxial nozzle/jet configuration is studied. Flowfield predictions obtained using an axisymmetric RANS solver for compressible flows and predicted acoustic signature obtained using a method based on RANS and Lighthill's acoustic analogy are compared with flowfield and radiated sound predictions obtained using LES combined with Kirchhoff surface integration. In the predicted flow statistics, the most noticeable difference between RANS and LES results is that the RANS calculation gives somewhat lower levels of turbulence kinetic energy in the shear layers in the near-nozzle regions and hence the LES jet mixes somewhat faster and thus the potential core region is shorter in this simulation.

Modelling the differential rotation of F stars

AbstractWe model stellar differential rotation based on the mean‐field theory of fluid dynamics. DR is mainly driven by Reynolds stress, which is anisotropic and has a non‐diffusive component because the Coriolis force affects the convection pattern. Likewise, the convective heat transport is not strictly radial but slightly tilted towards the rotation axis, causing the polar caps to be slightly warmer than the equator. This drives a flow opposite to that caused by differential rotation and so allows the system to avoid the Taylor‐Proudman state. Our model reproduces the rotation pattern in the solar convection zone and allows predictions for other stars with outer convection zones. The surface shear turns out to depend mainly on the spectral type and only weakly on the rotation rate. We present results for stars of spectral type F which show signs of very strong differential rotation in some cases. Stars just below the mass limit for outer convection zones have shallow convection zones with short convective turnover times. We find solar‐type rotation and meridional flow patterns at much shorter rotation periods and horizontal shear much larger than on the solar surface, in agreement with recent observations. (© 2007 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)

Nutrient dynamics between sediment and overlying water in the inner part of Izmir Bay, Eastern Aegean

The nutrient flux experiments for the sediments of Inner Izmir Bay were performed for the first time during January 2004-August 2004. The flux rates ranged between -127.9 and 358.2 microg atN m(-2) day(-1) for NH(4) (+), -47.88 and 320.9 microg at N m(-2) day(-1) for NO(2) (-), -62.96 and 121.3 microg at N m(-2) day(-1) for NO(3) (-), -64.1 and 528 microg atP m(-2) day(-1) for reactive phosphate (RP) and between -168.44 and 284.19 microg at Si m(-2) day(-1) for reactive silicate (RSi). Negative values were obtained from core incubations in winter except for nitrite (flux from water to sediment). The positive flux in all the core incubations during spring and summer (except nitrite in August) at least revealed that the sediment might be partially anoxic and/or included H(2)S. The turnover times obtained from water column nutrient inventory and flux rates indicated that Si and NH(4) (+) possessed a rapid cycle in water column. It was argued that NO(3) (-) would be more influenced by the removal processes within the sediment, therefore the water column would provide an additional contribution to the N limitation and the short turnover time of RP could rapidly supply RP to the water column. The continuous increase of pore water nutrient concentrations from January to August does not explain whether this nutrient reserve attains the next year with higher background levels or it is released back to environment at the end of autumn.

Fate and dynamics of recently fixed C in pasture plant–soil system under field conditions

The flow of photosynthetically fixed C from plants to selected soil C pools was studied after 13CO2 pulse labeling of pasture plants under field conditions, dynamics of root-derived C in soil was assessed and turnover times of the soil C pools were estimated. The transport of the fixed C from shoots to the roots and into the soil was very fast. During 27 h, net C belowground allocation reached more than 10% of the fixed C and most of the C was already found in soil. Soil microbial biomass (CMIC) was the major sink of the fixed C within soil C pools (ca 40–70% of soil 13C depending on sampling time). Significant amounts of 13C were also found in other labile soil C pools connected with microbial activity, in soluble organic C and C associated with microbial biomass (hot-water extract from the soil residue after chloroform fumigation-extraction) and the 13C dynamics of all these pools followed that of the shoots. When the labelling (2 h) finished, the fixed 13C was exponentially lost from the plant–soil system. The loss had two phases; the first rapid phase corresponded to the immediate respiration of 13C during the first 24 h and the second slower loss was attributable to the turnover of 13C assimilated in CMIC. The corresponding turnover times for CMIC were 1.1 days and 3.4 days respectively. Such short turnover times are comparable to those measured by growth kinetics after the substrate amendment in other studies, which indicates that microbial growth in the rhizosphere is probably not limited by substrate availability. Our results further confirmed the main role of the soil microbial community in the transformation of recently fixed C, short turnover time of the easily degradable C in the rhizosphere, and its negligible contribution to more stable soil C storage.

Fungal biomass production and turnover in soil estimated using the acetate-in-ergosterol technique

We report the first attempt to estimate fungal biomass production in soil by correlating relative fungal growth rates (i.e., acetate incorporation into ergosterol) with fungal biomass increase (i.e., ergosterol) following amendments with dried alfalfa or barley straw in soil. The conversion factor obtained was then used in unamended soil, resulting in fungal biomass productions of 10–12 μg C g −1 soil, yielding fungal turnover times between 130 and 150 days. Using a conversion factor from alfalfa-treated soil only resulted in two times higher estimates for biomass production and consequently lower turnover times. Comparing fungal biomass production with basal respiration indicated that these calculations overestimated the former. Still, the turnover times of fungal biomass in soil were in the same range as turnover times estimated in aquatic systems. The slow turnover of fungal biomass contrasts with the short turnover times found for bacteria. The study thus presents empirical data substantiating the theoretical division of bacteria and fungi into a fast and a slow energy channel, respectively, in the soil food web.

Fine‐root turnover patterns and their relationship to root diameter and soil depth in a 14C‐labeled hardwood forest

Characterization of turnover times of fine roots is essential to understanding patterns of carbon allocation in plants and describing forest C cycling. We used the rate of decline in the ratio of 14C to 12C in a mature hardwood forest, enriched by an inadvertent 14C pulse, to investigate fine-root turnover and its relationship with fine-root diameter and soil depth. Biomass and Delta14C values were determined for fine roots collected during three consecutive winters from four sites, by depth, diameter size classes (< 0.5 or 0.5-2 mm), and live-or-dead status. Live-root pools retained significant 14C enrichment over 3 yr, demonstrating a mean turnover time on the order of years. However, elevated Delta14C values in dead-root pools within 18 months of the pulse indicated an additional component of live roots with short turnover times (months). Our results challenge assumptions of a single live fine-root pool with a unimodal and normal age distribution. Live fine roots < 0.5 mm and those near the surface, especially those in the O horizon, had more rapid turnover than 0.5-2 mm roots and deeper roots, respectively.

Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin

We measured prokaryotic production and respiration in the major water masses of the North Atlantic down to a depth of ,4,000 m by following the progression of the two branches of North Atlantic Deep Water (NADW) in the oceanic conveyor belt. Prokaryotic abundance decreased exponentially with depth from 3 to 0.4 3 105 cells mL21 in the eastern basin and from 3.6 to 0.3 3 105 cells mL21 in the western basin. Prokaryotic production measured via 3H-leucine incorporation showed a similar pattern to that of prokaryotic abundance and decreased with depth from 9.2 to 1.1 mmol C m23 d21 in the eastern and from 20.6 to 1.2 mmol C m23 d21 in the western basin. Prokaryotic respiration, measured via oxygen consumption, ranged from about 300 to 60 mmol C m23 d21 from ,100 m depth to the NADW. Prokaryotic growth efficiencies of ,2% in the deep waters (depth range 1,200–4,000 m) indicate that the prokaryotic carbon demand exceeds dissolved organic matter input and surface primary production by 2 orders of magnitude. Cell-specific prokaryotic production was rather constant throughout the water column, ranging from 15 to 32 3 1023 fmol C cell21 d21 in the eastern and from 35 to 58 3 1023 fmol C cell21 d21 in the western basin. Along with increasing cell-specific respiration towards the deep water masses and the relatively short turnover time of the prokaryotic community in the dark ocean (34–54 d), prokaryotic activity in the meso- and bathypelagic North Atlantic might be higher than previously assumed.

Free Atmospheric CO2 Enrichment (FACE) Increased Labile and Total Carbon in the Mineral Soil of a Short Rotation Poplar Plantation

The global net terrestrial carbon sink was estimated to range between 0.5 and 0.7 Pg C y−1 for the early 1990s. FACE (free atmospheric CO2 enrichment) studies conducted at the whole-tree and community scale indicate that there is a marked increase of primary production, mainly allocated into below-ground biomass. The enhanced carbon transfer to the root system may result in enhanced rhizodeposition and subsequent transfer to soil C pools. During the first rotation of the POP/EuroFACE experiment in a short-rotation Poplar plantation, total soil C content increased more under ambient CO2 treatment than under FACE, while under FACE more new C was incorporated than under ambient CO2. These unexpected and opposite effects may have been caused by a priming effect, where priming effect is defined as the stimulation of SOM decomposition caused by the addition of labile substrates. In order to gain insight into these processes affecting SOM decomposition, we obtained the labile, refractory and stable pools of soil C and N by chemical fractionation (acid hydrolysis) and measured rates of N-mineralization. Results of the first 2 years of the second rotation show a larger increase of total soil C% under FACE than under ambient CO2. In contrast to the first rotation, total C% is now increasing faster under FACE than under ambient CO2. Based on these observations we infer that the priming effect ceased during the second rotation. FACE treatment increased the labile C fraction at 0–10 cm depth, which is in agreement with the larger input of plant litter and root exudates under FACE. N-mineralization rates were not affected by FACE. We infer that the system switched from a state where extra labile C and sufficient N-availability (due to the former agricultural use of the soil) caused a priming effect (first rotation), to a state where extra C input is accumulating due to limited N-availability (second rotation). Our results on N-mineralization (second rotation) are in agreement with observations made at three forest FACE sites (Duke Forest, Oak Ridge, and Rhinelander), but our finding of increasing mineral soil C content contrasted with results at the Duke Forest where no significant increase in C content of the mineral soil occurred. However, the FACE induced increase in total C content occurred within the fraction with the shortest turnover time, i.e. the labile fraction. The refractory and stable fractions were not affected. The question remains whether the currently observed larger increase of total soil C and the increase of labile C under FACE will eventually result in long-term C storage in refractory and stable organic matter fractions.

Conversion From Agriculture To Grassland Builds Soil Organic Matter On Decadal Timescales

Soil organic matter (SOM) often increases when agricultural fields are converted to perennial vegetation, yet decadal scale rates and the mechanisms that underlie SOM accumulation are not clear. We measured SOM accumulation and changes in soil properties on a replicated chronosequence of former agricultural fields in the midwestern United States that spanned 40 years after perennial-grassland establishment. Over this time period, soil organic carbon (SOC) in the top 10 cm of soil accumulated at a constant rate of 62.0 g x m(-2) x yr(-1), regardless of whether the vegetation type was dominated by C3 or C4 grasses. At this rate, SOC contents will be equivalent to unplowed native prairie sites within 55-75 years after cultivation ceased. Both labile (short turnover time) and recalcitrant (long turnover time) carbon pools increased linearly for 40 years, with recalcitrant pools increasing more rapidly than expected. This result was consistent across several different methods of measuring labile SOC. A model that investigates the mechanisms of SOM formation suggests that rapid formation of stable carbon resulted from biochemically resistant microbial products and plant material. Former agricultural soils of the Great Plains may function as carbon sinks for less than a century, although much of the carbon stored is stable.

Microbial utilization of lipids in lake water

This report evaluates the importance of lipids as a source of substrates for metabolism of heterotrophic bacteria based on measurements of uptake of [3H]palmitic acid and lipase activity in lakes of differing degrees of eutrophication. The highest rates of utilization of lipids by bacteria (i.e. specific and actual rates of uptake of [3H]palmitic acid and specific lipase activity) were observed in pelagic water of mesotrophic lake where the highest concentration and the shortest turnover time of natural pool of palmitic acid was found. Lipids in highly eutrophicated lakes were less important for metabolism of aquatic bacterial communities. Lipid content in lake water depended on species composition of plankton in the studied lakes.

Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time

The distribution of 15 typical freshwater bacterial groups in 15 diverse lakes in northern Europe was investigated using reverse line blot hybridization. Statistical evaluation of the data in relation to the characteristics of the lakes showed that pH, temperature, and the theoretical hydrological retention time of the lakes were most strongly related to variations in the distribution of bacterial taxa. This suggests that pH and temperature are steering factors in the selection of taxa and supports the notion that communities in lakes with short water turnover times are influenced by the input of bacterial cells from the drainage areas. Within the beta subdivision of the Proteobacteria (Betaproteobacteria), as well as within the divisions Actinobacteria and Verrucomicrobia, different subgroups were associated differently with environmental variables.