Cryptosporidium is a waterborne pathogen that causes diarrhea in vertebrates and humans (mainly C. hominis and C. parvum). Ozone (O3) is a powerful disinfectant due to its high oxidative characteristics, and it is used to inactivate microorganisms in drinking water. As an alternative to the gas dissolution system for producing ozone from oxygen, a simpler electrolytic ozone generation system has recently been developed. In the present study, the efficacy of the ozonated water produced by this system in inactivating Cryptosporidium parasites (C. parvum) was evaluated at different current intensities (which change the ozone concentrations) and short exposure times (15-60s). Oocyst viability and integrity was assessed using vital dye staining, excystation assays, and scanning electron microscopy (SEM). SEM data revealed that oocyst walls were damaged by exposure to ozone molecules even at low concentrations (< 0.01mg/l for 1min) (current intensity 0.2 A), but that the excystation assay could not differentiate between deformed oocysts (dead) and partially excysted oocysts (alive). Exposure to ozonated water produced with a low current intensity (0.3 A) for 15 and 120s resulted in the inactivation of 96.2% (CT value < 0.003) and 99.4% (CT value < 0.020) of the oocysts, respectively. Thus, it was estimated that a CT value more than 0.020 was required to inactivate > 99% of the C. parvum oocysts. These results suggested that the electrolytic ozone generation system may be more effective than gas dissolution ozone generation; however, further studies using additional approaches are needed to obtain clearer evidence.