Shoot Traits Research Articles

Shoot Flammability Patterns in Native and Exotic Street Tree Species at the Wildland–Urban Interface of Eastern Australia

Street trees provide ecosystem services such as heat mitigation, improved community well-being, and biodiversity conservation. At the wildland–urban interface (WUI), high-flammability street trees also provide a conflicting ecosystem disservice, heightening risks of wildfire spread into urban areas. We addressed this service–disservice conflict by assessing shoot flammability patterns in 10 street tree species, to identify low-flammability species that can potentially mitigate wildfire risks at the WUI. We found significant differences among species in flammability attributes including time-to-flame (TTF), flame duration (FD), number of flaming events (nF), and flame temperature (FT), and identified low-flammability species for each attribute. Overall, species’ rankings from least to most flammable differed considerably across the four attributes. For example, native water gum (Tristaniopsis laurina) had the slowest TTF, but had the longest FD. Among nine shoot traits, we found that high leafing intensity was the most frequent trait correlated with flammability. In particular, high leafing intensity was significantly related to fast TTF and high FT. Lack of coordination among flammability attributes suggests that, in general, selection of low-flammability street tree species should consider how each flammability attribute differentially contributes to wildfire spread risk. Nonetheless, native Tuckeroo (Cupaniopsis anacardioides) emerged as a potential candidate for further exploration as a low-flammability street tree as it had comparatively long TTF, short FD, and low nF. We found no consistent evidence that exotic species were less flammable than native species, and suggest that native trees be the focus of further research to identify low-flammability street trees.

Unrevalling phenotypic diversity of root system architecture in ancient wheat species versus modern wheat cultivars

Understanding the phenotypic variability in root system architecture and root-shoot relationships across different growth stages of wheat is of utmost importance for the improvement of genotypes with enhanced nutrient uptake and resource-use efficiency. This study focused on identifying variations and relationships in the root and shoot characteristics of seven modern cultivars and twelve ancient wheat accessions of different species, including T. monococcum, T. turanicum, T. polonicum, T. mirabile, T. durum, and T. aestivum, during the early vegetative growth and stem elongation stages. The results demonstrated significant phenotypic variation among the genotypes for shoot traits, root biomass, rooting depth, R/S ratio, and seminal and nodal root numbers. When considering both growth stages, the dry land-adapted cultivar ‘Taner’ and ancient wheat species, such as T. turanicum (2) and T. monococcum (1) accessions, exhibited deeper roots, which can enhance access to water in drought-prone areas. Furthermore, it was observed that modern wheat cultivars and T. turanicum accessions exhibited increased root biomass, suggesting a higher allocation of resources towards root growth, which could potentially enhance nutrient uptake. Conversely, T. monococcum accessions and T. mirabile revealed lower root biomass compared to other ancient species and modern cultivars. Additionally, the unrooted cluster analysis based on root biomass, rooting depth, and root to shoot ratio at both growth stages indicated a distinct separation of T. monococcum accessions and T. mirabile from other genotypes. Overall, these findings underscore the importance of phenotypic diversity in root traits for crop improvement and adaptation to varying environments. Identifying genotypes with desirable root characteristics can enhance nutrient and water uptake efficiencies, leading to increased crop productivity and sustainability.

Genetic characterization of root architectural traits in barley (Hordeum vulgare L.) using SNP markers.

Increasing attention is paid to providing new tools to breeders for targeted breeding for specific root traits that are beneficial in low-fertility, drying soils; however, such information is not available for barley (Hordeum vulgare L.). A panel of 191 barley accessions (originating from Australia, Europe, and Africa) was phenotyped for 26 root and shoot traits using the semi-hydroponic system and genotyped using 21 062 high-quality single nucleotide polymorphism (SNP) markers generated by genotyping-by-sequencing (GBS). The population structure analysis of the barley panel identified six distinct groups. We detected 1199 significant (P<0.001) marker-trait associations (MTAs) with r2 values up to 0.41. The strongest MTAs were found for root diameter in the top 20 cm and the longest root length. Based on the physical locations of these MTAs in the barley reference genome, we identified 37 putative QTLs for the root traits, and three QTLs for shoot traits, with nine QTLs located in the same physical regions. The genomic region 640-653 Mb on chromosome 7H was significant for five root length-related traits, where 440 annotated genes were located. The putative QTLs for various root traits identified in this study may be useful for genetic improvement regarding the adaptation of new barley cultivars to suboptimal environments and abiotic stresses.

Exogenously applied nicotinic acid alleviates drought stress by enhancing morpho-physiological traits and antioxidant defense mechanisms in wheat

Across the globe, the frequent occurrence of drought spells has significantly undermined the sustainability of modern high-input farming systems, particularly those focused on staple crops like wheat. To ameliorate the deleterious impacts of drought through a biologically viable and eco-friendly approach, a study was designed to explore the effect of nicotinic acid on different metabolic, and biochemical processes, growth and yield of wheat under optimal moisture and drought stress (DS). The current study was comprised of different levels of nicotinic acid applied as foliar spray (0 g L−1, 0.7368, 1.477, 2.2159 g L−1) and fertigation (0.4924, 0.9848, and 1.4773 g L−1) under normal conditions and imposed drought by withholding water at anthesis stage. The response variables were morphological traits such as roots and shoots characteristics, yield attributes, grain and biological yields along with biosynthesis of antioxidants. The results revealed that nicotinic acid dose of 2.2159 g L−1 out-performed rest of treatments under both normal and DS. The same treatment resulted in the maximum root growth (length, fresh and dry weights, surface area, diameter) and shoot traits (length, fresh and dry weights) growth. Additionally, foliar applied nicotinic acid (2.2159 g L−1) also produced as the highest spike length, grains spike−1, spikelet’s spike−1 and weight of 1000 grains. Moreover, these better yield attributes led to significantly higher grain yield and biological productivity of wheat. Likewise in terms of physiological growth of wheat under DS, the same treatment remained superior by recording the highest SPAD value, relative water content, water potential of leaves, leaf area, stomatal conductance (292 mmolm−2S−1), internal carbon dioxide concentration, photosynthesis and transpiration rate. Interestingly, exogenously applied nicotinic acid remained effective in triggering the antioxidant system of wheat by recording significantly higher catalase, peroxidase, superoxide dismutase and ascorbate peroxidase.

Trade-offs and synergies of plant traits co-drive efficient nitrogen use in intercropping systems

ContextNitrogen (N) enrichment increases aboveground net primary productivity, but causes a loss of plant diversity and a decline in ecosystem stability. Diverse systems that enhance the N-use efficiency help achieve sustainable development goals. Functional traits have been used to predict ecosystem functions in diverse systems. However, few studies considered both the effect of functional traits and evaluated the relationship between traits and N acquisition in intercropping. ObjectiveThe aim of this study was to evaluate the relationships between functional traits resulting from interspecific interactions and determine relationships between functional traits and N acquisition of intercropping systems. MethodsBased on a four-year N-manipulation field experiment, we measured 10 functional traits related to light interception and nutrient-use efficiency in different systems (maize (Zea mays L.), peanut (Arachis hypogaea L.), soybean (Glycine max L. Merrill.) monocultures, and maize/peanut and maize/soybean intercrops) at the pre-tasseling stage of maize, calculated the crude protein yield and aboveground N content at harvest time. ResultsThe maize grain N concentration was increased by N application, and it increased by intercropping in legumes. Both maize/soybean and maize/peanut intercropping systems increased crude protein productivity. Synergies among plant functional traits of maize allowed maize to establish its dominance, which resulted in greater N acquisition and crude protein yield of intercrops. Trade-offs among plant functional traits (between root traits and shoot traits of legumes) show strategies of legumes in response to interspecific competition. The specific leaf area of the legume was a key trait and affected interspecific interactions. This N-use advantage of intercropping was directly influenced by the aboveground functional traits of the system (community-weighted mean values of functional traits), but indirectly affected by belowground functional traits of the system. Conclusions and significanceOur study highlights greater N uptake of the intercropping system and suggests that intercropping can be used to increase the quality of crop products via enhancing crude protein production. The synergy and trade-offs in plant functional traits together enhance efficient N use in the intercropping systems. These findings help to better understand the underlying mechanisms that determine efficient resource use in diverse cropping systems and have implications for the sustainable management of food-production systems.

Plasticity of root hair and rhizosheath traits and their relationship to phosphorus uptake in sorghum.

Sorghum is an essential crop for resilient and adaptive responses to climate change. The root systems of crop plants significantly contribute to the tolerance of abiotic stresses. There is little information on sorghum genotypes' root systems and plasticity to external P supply. In this paper, we investigated the variations in root systems, as well as the responses, trait relationships, and plasticity of two sorghum genotypes (Naga Red and Naga White), popularly grown in Ghana, to five external P concentrations ([P]ext): 0, 100, 200, 300, and 400 mg P kg-1 soil. Sorghum plants were grown in greenhouse pots and harvested for root trait measurements at the five-leaf and growing point differentiation (GPD) developmental stages. The plants were responsive to [P]ext and formed rhizosheaths. The two genotypes showed similar characteristics for most of the traits measured but differed significantly in total and lateral root lengths in favor of the red genotype. For example, at the five-leaf growth stage, the lateral root length of the red and white genotypes was 22.8 and 16.2cm, respectively, but 124 and 88.9cm, at the GPD stage. The responses and plasticity of the root system traits, including rhizosheath, to [P]ext were more prominent, positive, and linear at the five-leaf stage than at the GPD growth stage. At the five-leaf growth stage, total root length increased by about 2.5-fold with increasing [P]ext compared to the unamended soil. At the GPD stage, however, total root length decreased by about 1.83-fold as [P]ext increased compared to the unamended soil. Specific rhizosheath weight correlated with RHD, albeit weakly, and together explained up to 59% of the variation in tissue P. Root hair density was more responsive to P supply than root hair length and showed a similar total and lateral root length pattern. Most desirable responses to P occurred at a rate of 200-300 mg P kg-1 soil. It is concluded that sorghum would form rhizosheath, and [P]ext could be critical for the early vigorous growth of sorghum's responsive root and shoot traits. Beyond the early days of development, additional P application might be necessary to sustain the responses and plasticity observed during the early growth period, but this requires further investigation, potentially under field conditions.

Genetic diversity in Ethiopian sorghum germplasm for root system architecture and trait association

Sorghum productivity in arid and semi-arid regions of Africa is very low, mainly due to limited water availability. Roots are the primary conduit for plants to access moisture and nutrients. Root growth angle determines the direction of root elongation in the soil profile and is an important trait for adaptation to water-limited environments. Information on the extent of genetic variation in root system architecture (RSA) and its relationship with drought response is critical for improving the performance of the crop under drought stress. The objective of this study was to examine the degree of genetic variability for root and shoot traits in sorghum germplasm during the seedling stage. Two hundred and ninety-one sorghum germplasm adapted to different agroecologies of Ethiopia were phenotyped for root and shoot traits using a purpose-built root chamber in the greenhouse at Jimma University. The experiment was set up in a row-column design with three replicates. Significant genetic variation (P < 0.01) was observed for all traits examined except root hair number and shoot dry weight. Root angle varied from 9° to 21.3° with an average of 14.9° and showed moderate heritability of 44.38%. Root dry weight also exhibited moderate heritability (49.3%). Correlation and path coefficient analysis revealed that root angle (RA) was uncorrelated with other RSA traits. Cluster analysis using the RSA traits grouped the 291 genotypes into four different clusters. The first three principal components accounted for about 50% of the total variation. The results demonstrate that the Ethiopian sorghum germplasm exhibits large variation in RSA traits that can be harnessed in breeding programs to enhance sorghum productivity under drought stress.

Analysis of sweetpotato shoot traits diversity and its relationship with storage root yield under short-period cultivation

Analysis of sweetpotato shoot traits diversity and its relationship with storage root yield under short-period cultivation

Early selection for drought tolerance in popcorn based on gene effects estimated in seedlings.

Low rainfall rates are becoming increasingly frequent because of climate change, causing droughts and threatening world food security. For popcorn, drought is the most limiting abiotic factor for plant's growth and development. Thus, the water deficit directly impacts for crop productivity. Based on knowledge of the genetic basis of traits involved in stages of popcorn germination and seedling development under water stress, genotypes with potential for adaptation to adverse growing conditions can be selected early. Therefore, data on genetic effects and combining ability of 10 popcorn parents were compiled to propose breeding strategies for the development of cultivars with greater adaptation to water stress in the early stages. Forty-five diallel hybrids were evaluated under two different water regimes, that is, water stress and full irrigation. This corresponded to a water retention capacity of 25% and 70% of the germination paper. The plants were watered daily as needed for seven days. A range of factors were evaluated, that is, germination traits including the germination speed index and germination on the seventh day; shoot traits including length and dry weight; and root system including length, dry weight, root-to-shoot ratio, maximum root number, root network area, specific and root network length, and root volume. Breeding for drought adaption in the early stages of popcorn development can be successful when hybrids are used, because of the genetic effects of dominance (ϕs). These control the traits evaluated at the seedling stage. The combinations L61 x P2 and L71 x P3 were recommended, in view of the more successful performance estimated for traits related to the shoot and root system.

Drip fertilization improve water and nitrogen use efficiency by optimizing root and shoot traits of winter wheat.

Proper irrigation and fertilization measures can not only improve water and fertilizer utilization efficiency, but also have important significance in ensuring agricultural environment security and sustainable development. A field experiment was conducted to determine the optimal drip fertilization measure of winter wheat and explain its mechanism by analyzing the physiological and ecological characteristics and utilization efficiency of water and nitrogen under different irrigation and fertilization methods. The plants were treated with three irrigation and fertilization methods: the traditional irrigation and fertilization method (CK), surface drip fertilization (I1) and underground drip fertilization (I2). The results demonstrated that different irrigation methods had various effects on population and physiological characteristics of wheat. The plant height, leaf area and tiller number of I1 were significantly higher than those of CK during the whole growth period. I2 decreased plant height, leaf area and tiller number at jointing stage, but at flowering stage, the leaf area of I2 t was significantly higher than that of CK. Different irrigation methods also affected the root distribution of wheat. At flowering stage, I1 had lower root biomass than CK in all soil layers. The upper root system of I2 was smaller, but the deep root system was larger compared with the control. I1 and I2 had lower total root weight and higher shoot biomass compared to CK, so their root-shoot ratio decreased significantly. I1 and I2 increased and instantaneous water use efficiency (IWUE) by increasing the photosynthetic rate (Pn) and reducing transpiration rate (Tr) at the flowering stage, while I2 had a similar Pn to I1, but reduced Tr, resulting in a higher IWUE than I1. Both I1 and I2 also increased root efficiency, root activity, and Fv/Fm of wheat at the late growth stage, promoting accumulated dry matter after flowering (ADM) and pre-flowering dry matter remobilization (DMR), leading to a significant increase in grain yield. In addition, I1 and I2 had significantly higher water productivity (WP), irrigation water productivity (IWP), nitrogen partial productivity (NPP) and nitrogen agronomic efficiency (NAE) than CK, especially I2 had the highest IWP, WP, NPP and NAE. These findings highlight the potential benefits of drip fertilization in promoting sustainable wheat production and elucidate the mechanism by which it promotes efficient use of water and fertilizer.

Can microplastics threaten plant productivity and fruit quality? Insights from Micro-Tom and Micro-PET/PVC

Solanum lycopersicum L., a crop grown worldwide with a high nutritional value for the human diet, was used to test the impact of microplastics on plant growth, productivity, and fruit quality. Two of the most represented microplastics in soils, polyethylene terephthalate (PET) and polyvinyl chloride (PVC), were tested. Plants were grown in pots with an environmentally realistic concentration of microplastics and, during the whole crop life cycle, photosynthetic parameters, number of flowers and fruits were monitored. At the end of the cultivation, plant biometry and ionome were evaluated, along with fruit production and quality. Both pollutants had negligible effects on shoot traits, with only PVC causing a significant reduction in shoot fresh weight. Despite an apparent low or no toxicity during the vegetative stage, both microplastics decreased the number of fruits and, in the case of PVC, also their fresh weights. The plastic polymer-induced decline in fruit production was coupled with wide variations in fruit ionome, with marked increases in Ni and Cd. By contrast there was a decline in the nutritionally valuable lycopene, total soluble solids, and total phenols. Altogether, our results reveal that microplastics can not only limit crop productivity but also negatively impact fruit quality and enhance the concentration of food safety hazards, thus raising concerns for their potential health risks for humans.

Physical Mapping of QTLs for Root Traits in a Population of Recombinant Inbred Lines of Hexaploid Wheat

Root architecture is key in determining how effective plants are at intercepting and absorbing nutrients and water. Previously, the wheat (Triticum aestivum) cultivars Spica and Maringa were shown to have contrasting root morphologies. These cultivars were crossed to generate an F6:1 population of recombinant inbred lines (RILs) which was genotyped using a 90 K single nucleotide polymorphisms (SNP) chip. A total of 227 recombinant inbred lines (RILs) were grown in soil for 21 days in replicated trials under controlled conditions. At harvest, the plants were scored for seven root traits and two shoot traits. An average of 7.5 quantitative trait loci (QTL) were associated with each trait and, for each of these, physical locations of the flanking markers were identified using the Chinese Spring reference genome. We also compiled a list of genes from wheat and other monocotyledons that have previously been associated with root growth and morphology to determine their physical locations on the Chinese Spring reference genome. This allowed us to determine whether the QTL discovered in our study encompassed genes previously associated with root morphology in wheat or other monocotyledons. Furthermore, it allowed us to establish if the QTL were co-located with the QTL identified from previously published studies. The parental lines together with the genetic markers generated here will enable specific root traits to be introgressed into elite wheat lines. Moreover, the comprehensive list of genes associated with root development, and their physical locations, will be a useful resource for researchers investigating the genetics of root morphology in cereals.

Compacted soil adaptability of Brassica napus driven by root mechanical traits

Soil compaction due to mechanized farming operations is a recurrent issue affecting crop growth and yield. Yet, how soil compaction affects plant functions and ecological strategies is poorly known. With Brassica napus, i.e. a widespread crop species as study object, we aim to understand (i) how soil compaction impacts root and shoot traits related to the plant’s well-being, nutrient acquisition of Brassica napus with different mechanical robustness, as well as their trade-offs, and (ii) how such impacts vary among different cultivars. To do this, we cultivated six cultivars of Brassica napus in non-compacted (control) and compacted (treatment) soils, respectively, in a sand culture system. After harvesting, a series of mechanical, morphological and chemical traits of roots and/or shoots were measured. Results showed that soil compaction significantly limited root penetration depth and root system establishment in morphological traits, leading further to significant reduction in nutrients acquisition and plant biomass accumulation. However, soil compaction significantly increases the average root diameter and root/shoot ratio, and facilitate more root exudates secretion (e.g. organic acids and polysaccharides) of Brassica napus cultivars. The Brassica napus cultivars with large root mechanical traits (e.g. root tensile force, root tensile strength and modulus of elasticity) had higher root cellulose and lignin concentrations and showed a stronger response in maximum root depth and specific root length compared with Brassica napus cultivars with small root mechanical traits in compacted treatment, which resulted in the greater fine root length and more root exudates secretion at root-soil interface. Furthermore, deep rooting enhanced nutrients acquisition and further biomass accumulation in compacted soil. Totally, the Brassica napus cultivars with large root mechanical traits with more fine roots and root exudates were critical for Brassica napus root penetration into a deep soil layer in compacted soil.

Communities of nematodes, bacteria and fungi differ among soils of different wild cabbage populations

Plants exhibit significant variation in morphological and chemical traits of shoots and roots in response to an array of biotic and abiotic selection pressures, and this variation in turn affects their interactions with the biotic and abiotic environment. Thus far, most studies examining these interactions have focused on the aboveground domain, which is easier to study than the belowground domain. However, soil organisms significantly affect plant fitness directly through mutualisms e.g. growth promotion, or antagonisms e.g. herbivory and disease. Natural populations of wild Brassica oleracea L. growing along the south coastline of Great Britain exhibit significant differences in growth form and secondary chemistry. Studies in the field have shown that these differences affect aboveground plant-insect interactions, whereas soil communities have not been explored. We sampled belowground communities of nematodes, bacteria and fungi associated with roots, rhizosphere and bulk soil in five coastal wild cabbage populations in Dorset, England, and found significant differences among these communities. Site-related differences in nematode community composition were primarily found for nematodes in bulk soil and were consistent over two years of sampling. Nematode communities in roots of wild cabbage did not significantly differ across the cabbage populations but did differ between the two years. Results for communities in rhizosphere soil were spatially and temporally variable. The composition of nematode communities in cabbage roots differed strongly from those in the rhizosphere and bulk soil, showing that plants attract a subset of nematodes from the bulk soil community. For microbes, we analysed only rhizosphere samples, and found that fungal communities differed more strongly among plant populations than bacterial communities. Thus, while there is spatio-temporal variation in belowground communities, soil and/or plant properties differentially affect the assembly of nematodes, fungi and bacteria.

Root morphological and physiological traits and arbuscular mycorrhizal fungi shape phosphorus-acquisition strategies of 12 vegetable species.

Trait plasticity and integration mediate vegetable adaptive strategies. However, it is unclear how patterns of vegetables in root traits influence vegetable adaptation to different phosphorus (P) levels. Nine root traits and six shoot traits were investigated in 12 vegetable species cultivated in a greenhouse with low and high P supplies to identify distinct adaptive mechanisms in relation to P acquisition (40 and 200 P mg kg-1 as KH2PO4). At the low P level, a series of negative correlations among root morphology, exudates and mycorrhizal colonization, and different types of root functional properties (root morphology, exudates and mycorrhizal colonization) respond differently to soil P levels among vegetable species. non-mycorrhizal plants showed relatively stable root traits as compared to solanaceae plants that showed more altered root morphologies and structural traits. At the low P level, the correlation between root traits of vegetable crops was enhanced. It was also found in vegetables that low P supply enhances the correlation of morphological structure while high P supply enhances the root exudation and the correlation between mycorrhizal colonization and root traits. Root exudation combined with root morphology and mycorrhizal symbiosis to observe P acquisition strategies in different root functions. Vegetables respond highly under different P conditions by enhancing the correlation of root traits. Low P supply could significantly improve the direct and indirect ways of mycorrhizal vegetable crops' root traits axis on shoot biomass, and enhance the direct way of non-mycorrhizal vegetable crops' root traits axis and reduce the indirect way of root exudates.

Genome-wide association study in two-row spring barley landraces identifies QTL associated with plantlets root system architecture traits in well-watered and osmotic stress conditions.

Water availability is undoubtedly one of the most important environmental factors affecting crop production. Drought causes a gradual deprivation of water in the soil from top to deep layers and can occur at diverse stages of plant development. Roots are the first organs that perceive water deficit in soil and their adaptive development contributes to drought adaptation. Domestication has contributed to a bottleneck in genetic diversity. Wild species or landraces represent a pool of genetic diversity that has not been exploited yet in breeding program. In this study, we used a collection of 230 two-row spring barley landraces to detect phenotypic variation in root system plasticity in response to drought and to identify new quantitative trait loci (QTL) involved in root system architecture under diverse growth conditions. For this purpose, young seedlings grown for 21 days in pouches under control and osmotic-stress conditions were phenotyped and genotyped using the barley 50k iSelect SNP array, and genome-wide association studies (GWAS) were conducted using three different GWAS methods (MLM GAPIT, FarmCPU, and BLINK) to detect genotype/phenotype associations. In total, 276 significant marker-trait associations (MTAs; p-value (FDR)< 0.05) were identified for root (14 and 12 traits under osmotic-stress and control conditions, respectively) and for three shoot traits under both conditions. In total, 52 QTL (multi-trait or identified by at least two different GWAS approaches) were investigated to identify genes representing promising candidates with a role in root development and adaptation to drought stress.

Crop root system plasticity for improved yields in saline soils.

Crop yields must increase to meet the demands of a growing world population. Soil salinization is increasing due to the impacts of climate change, reducing the area of arable land for crop production. Plant root systems are plastic, and their architecture can be modulated to (1) acquire nutrients and water for growth, and (2) respond to hostile soil environments. Saline soils inhibit primary root growth and alter root system architecture (RSA) of crop plants. In this review, we explore how crop root systems respond and adapt to salinity, focusing predominately on the staple cereal crops wheat, maize, rice, and barley, that all play a major role in global food security. Cereal crops are classified as glycophytes (salt-sensitive) however salt-tolerance can differ both between species and within a species. In the past, due to the inherent difficulties associated with visualising and measuring root traits, crop breeding strategies have tended to focus on optimising shoot traits. High-resolution phenotyping techniques now make it possible to visualise and measure root traits in soil systems. A steep, deep and cheap root ideotype has been proposed for water and nitrogen capture. Changes in RSA can be an adaptive strategy to avoid saline soils whilst optimising nutrient and water acquisition. In this review we propose a new model for designing crops with a salt-tolerant root ideotype. The proposed root ideotype would exhibit root plasticity to adapt to saline soils, root anatomical changes to conserve energy and restrict sodium (Na+) uptake, and transport mechanisms to reduce the amount of Na+ transported to leaves. In the future, combining high-resolution root phenotyping with advances in crop genetics will allow us to uncover root traits in complex crop species such as wheat, that can be incorporated into crop breeding programs for yield stability in saline soils.

Spring Wheat’s Ability to Utilize Nitrogen More Effectively Is Influenced by Root Phene Variation

Genetic improvement for nitrogen use efficiency (NUE) can play a very crucial role in sustainable agriculture. Root traits have hardly been explored in major wheat breeding programs, more so in spring germplasm, largely because of the difficulty in their scoring. A total of 175 advanced/improved Indian spring wheat genotypes were screened for root traits and nitrogen uptake and nitrogen utilization at varying nitrogen levels in hydroponic conditions to dissect the complex NUE trait into its component traits and to study the extent of variability that exists for those traits in Indian germplasm. Analysis of genetic variance showed a considerable amount of genetic variability for nitrogen uptake efficiency (NUpE), nitrogen utilization efficiency (NUtE), and most of the root and shoot traits. Improved spring wheat breeding lines were found to have very large variability for maximum root length (MRL) and root dry weights (RDW) with strong genetic advance. In contrast to high nitrogen (HN), a low nitrogen (LN) environment was more effective in differentiating wheat genotypes for NUE and its component traits. Shoot dry weight (SDW), RDW, MRL, and NUpE were found to have a strong association with NUE. Further study revealed the role of root surface area (RSA) and total root length (TRL) in RDW formation as well as in nitrogen uptake and therefore can be targeted for selection to further the genetic gain for grain yield under high input or sustainable agriculture under limited inputs.

Mapping Genetic Variation in Arabidopsis in Response to Plant Growth-Promoting Bacterium Azoarcus olearius DQS-4T.

Plant growth-promoting bacteria (PGPB) can enhance plant health by facilitating nutrient uptake, nitrogen fixation, protection from pathogens, stress tolerance and/or boosting plant productivity. The genetic determinants that drive the plant-bacteria association remain understudied. To identify genetic loci highly correlated with traits responsive to PGPB, we performed a genome-wide association study (GWAS) using an Arabidopsis thaliana population treated with Azoarcus olearius DQS-4T. Phenotypically, the 305 Arabidopsis accessions tested responded differently to bacterial treatment by improving, inhibiting, or not affecting root system or shoot traits. GWA mapping analysis identified several predicted loci associated with primary root length or root fresh weight. Two statistical analyses were performed to narrow down potential gene candidates followed by haplotype block analysis, resulting in the identification of 11 loci associated with the responsiveness of Arabidopsis root fresh weight to bacterial inoculation. Our results showed considerable variation in the ability of plants to respond to inoculation by A. olearius DQS-4T while revealing considerable complexity regarding statistically associated loci with the growth traits measured. This investigation is a promising starting point for sustainable breeding strategies for future cropping practices that may employ beneficial microbes and/or modifications of the root microbiome.

Variation in Shoot, Peduncle and Fruit Growth of Lagenaria siceraria Landraces.

Lagenaria siceraria (Molina) Standley is a prominent food source as almost all its plant parts are edible. However, no studies have recorded the changes in shoots, peduncles and fruits during its growth. Hence, this study aimed to record changes in shoot traits and relate the peduncle to the fruit traits of L. siceraria landraces across different growth stages. Changes in shoots, peduncles and fruits during growth were compared within and among landraces using analysis of variance, correlation, principal component analysis, cluster analysis and heritability estimates. Almost all landraces had harvestable shoots at 42 days after sowing. Peduncles became shorter and wider as the fruits elongated. Shoots, peduncles and fruits correlated positively with each other. The informative principal components had a total variability of 84.488%, with a major contribution from shoot traits. The biplot and dendrogram clustered landraces with similar growth habits and the harvestable shoot and fruit attributes into three clusters, but KRI and NSRC formed singlets. Shoot width (60.2%) and peduncle length (55.2%) had high heritability estimates. The general low heritability estimates and genetic advances indicated the presence of non-additive gene action. This study is the first report on changes in harvested shoots and the relationship between peduncles and fruits during growth.