The properties of AlnCum (n = 10–15, m = 1–3) clusters are explored using genetic algorithm combined with density functional theory (GA-DFT). The geometric structures of Al-Cu binary clusters are spherical when the numbers of the valence electrons are around the magic number 40 predicted by Jellium model. The stabilities decrease as the number of doping Cu atom increases. The stabilities also relate to the electronic configurations. In Al13Cu-a cluster, the 3d orbitals of the central Cu atom interact strongly with the superatomic 1D orbitals and formed five bonding orbitals and five antibonding orbitals. The bonding orbitals are dominated by 3d orbitals of Cu, and antibonding orbitals are composed mainly of the superatomic 1D orbitals. The “50 valence electrons” (including 3d10 of Cu) form closed 1S21P63d101D102S21F142P6 shells, and this electronic configuration can be taken as the combination of 40-electron rule. The 3d electrons of Cu atom don’t affect the Jellium model of the cluster.