Shellfish Culture Research Articles

Evaluation of effects of shellfish aquaculture and capture fishery on a semi-closed bay ecosystem

Coastal waters in the world are suffering from multiple anthropogenic disturbances, including capture fisheries and aquaculture. Ignoring possible interactions between multiple disturbances may cause serious consequences in our understanding of ecosystem dynamics. This study simulates individual and combined effects of fishing activities and shellfish cultivation on a semi-closed bay ecosystem using Ecopath with Ecosim (EwE). The changes of biomass and ecosystem structure were examined for three scenarios of having fishing alone, shellfish cultivation alone and both fishing and aquaculture. We found considerable impacts of shellfish aquaculture but minor impacts from fishing, suggesting shellfish aquaculture had dominated impacts on the study ecosystem. In addition, the effects of fishing and shellfish aquaculture were not additive on species biomass, rather showing a combined effect with synergy. Given the same loss in fisheries yield, controlling fishing and shellfish aquaculture simultaneously was more efficient for increasing nekton biomass compared to the control of either activity. We highlight the necessity for integrating management of multiple human stressors for an ecosystem-based management.

Composición de la comunidad bioincrustante de un cultivo de ostras tropicales en un estuario del Amazonas, Estado de Pará, Norte de Brasil

Biofouling affects global aquaculture with significant impacts on productivity and profitability, especially in marine shellfish culture, where both the target culture species and/or infrastructure are exposed to a diverse array of fouling organisms. In oyster culture, fouling of stock causes physical damage, mechanical interference, biological competition and environmental modification, with infrastructure also colonized. The present study describes the composition of the biofouling community inhabiting the surface of the mangrove oyster Crassostrea rhizophorae , cultivated in an Amazon estuary, in the state of Para, northern Brazil. In total, 6,124 macroinvertebrates were collected during July, August, October and December 2013. Collected epifauna was represented by 5 groups (Bivalvia, Gastropoda, Polychaeta, Crustacea and Anthozoa), 20 families and 37 species. Bivalvia was the most abundant class, with the mussel Mytella charruana by far the most dominant species with 5,183 individuals. Knowledge about the composition of biofouling as well as identifying the main species that cause direct impacts allows more tailored and strategic management options, minimizing the often-significant costs associated with biofouling control (antifouling)

Algae-Based Carbon Sequestration

Our civilization is facing a series of environmental problems, including global warming and climate change, which are caused by the accumulation of green house gases in the atmosphere. This article will briefly analyze the current global warming problem and propose a method that we apply algae cultivation to absorb carbon and use shellfish to sequestrate it. Despite the importance of decreasing CO2 emissions or developing carbon-free energy sources, carbon sequestration should be a key issue, since the amount of carbon dioxide that already exists in the atmosphere is great enough to cause global warming. Algae cultivation would be a good choice because they have high metabolism rates and provides shellfish with abundant food that contains carbon. Shellfish’s shells, which are difficult to be decomposed, are reliable storage of carbon, compared to dead organisms like trees and algae. The amount of carbon that can be sequestrated by shellfish is considerable. However, the sequestrating rate of algae and shellfish is not high enough to affect the global climate. Research on algae and shellfish cultivation, including gene technology that aims to create “super plants” and “super shellfish”, is decisive to the solution. Perhaps the baton of history will shift to gene technology, from nuclear physics that has lost appropriate international environment after the end of the Cold War. Gene technology is vital to human survival.

Measuring the effects of temperature rise on Mediterranean shellfish aquaculture

Shellfish aquaculture represents a worldwide valuable segment of the aquaculture market, spreading along the Mediterranean coasts, and is sensitive to the still unforeseen, poorly-known effects of climate change. Threats due to temperature rise can threaten the deployment and development of this sector, up until now recognised as the best candidate to mitigate the effects of fishery overexploitation. Here, we investigate the effects of temperature increase on the model species, Mytilus galloprovincialis, measuring outcomes from valve fragility (thickness) and condition index. Evidence of a reduction in the thickness of valves and the modulation condition of the mussels along with temperature increase have been gathered from simulations of a natural temperature gradient changing along latitude (the Italian Peninsula) and temperature risen (mesocosm trial). The obtained results offer a baseline to help the next generation of managers and stakeholders when assessing the reliability and feasibility of shellfish culture in a changing sea that can generate undetected and underestimated impacts on the sector.

Construction of computational protein structure data base by homology modeling for the aquatic pathogen Perkinsus marinus for targeted drug design and development

P. marinusinfection causes ahuge economic impact on shellfish cultivation. Thus this study was performed to establish a database of protein structures by homology modeling for the aquatic pathogen Perkinsusmarinus for SCADD applications. Modeller 9.17 was used to construct the protein models. PDBSum online server was used to validate the constructed models. PMDB online database was used to submit the modeled protein structures for P. marinus. A total of 250 drug-targetable proteins from UniProt database were selected for modeling. Based on the availability of more than 80% similarity template protein structures, 200 proteins were modeled using Modeller-9.17and validated by Ramachandran Plot analysis, based on the confidence score, 100 proteins were uploaded in the PMDB database, as significant proteins for SCADD application. In this study protein models constructed for P. marinus are now available for the scientific community for SCADDapplication to target P. marinus. Since no other protein structures are available from this bacteria as of now, this database would be highly useful to researchers working on this specific pathogen for designing effective and potential drugs.

ITRAQ-based quantitative proteomics reveals the biochemical mechanism of cold stress adaption of razor clam during controlled freezing-point storage

Razor clam is a major cultivated shellfish of great economic importance and high nutritional value. Due to high corruptible potential, razor clam is generally preserved by controlled freezing-point storage (CFPS). Here, we applied isobaric tags for relative and absolute quantification (iTRAQ) labeling to investigate the biochemical mechanism of cold stress adaption in razor clam during CFPS. In total, 369 proteins were quantified, and 27 of them were identified as differentially expressed proteins during CFPS, mostly involved in energy metabolism process, DNA duplication and protein synthesis, and stress response, specifically, MAPK is the predominant pathway. Further qPCR results revealed H2A and S6K 2 alpha to be the critical post-transcriptionally regulated genes. Our results provided proteomics information with respect to the biochemical mechanism of cold stress adaption in razor clam, shed light on the further elongation of razor clams storage period, and help clarify the novel mechanisms of cold tolerance.

Exploring fish microbial communities to mitigate emerging diseases in aquaculture.

Aquaculture is the fastest growing animal food sector worldwide and expected to further increase to feed the growing human population. However, existing and (re-)emerging diseases are hampering fish and shellfish cultivation and yield. For many diseases, vaccination protocols are not in place and the excessive use of antibiotics and other chemicals is of substantial concern. A more sustainable disease control strategy to protect fish and shellfish from (re-)emerging diseases could be achieved by introduction or augmentation of beneficial microbes. To establish and maintain a 'healthy' fish microbiome, a fundamental understanding of the diversity and temporal-spatial dynamics of fish-associated microbial communities and their impact on growth and health of their aquatic hosts is required. This review describes insights in the diversity and functions of the fish bacterial communities elucidated with next-generation sequencing and discusses the potential of the microbes to mitigate (re-)emerging diseases in aquaculture.

Assessing the presence of marine toxins in bivalve molluscs from southwest India

The south west coast of India has been showing a steady increase in shellfish cultivation both for local consumption and fishery export, over recent years. Perna viridis and Crassostrea madrasensis are two species of bivalve molluscs which grow in some selected regions of southern Karnataka, close to the city of Mangalore. In the early 1980s, shellfish consumers in the region were affected by intoxication from Paralytic Shellfish Poison present in local bivalves (clams and oysters) resulting in hospitalisation of many, including one fatality. Since then, there have been no further reports of serious shellfish intoxication and there is little awareness of the risks from natural toxins and no routine monitoring programme in place to protect shellfish consumers. This study presents the findings from the first ever systematic assessment of the presence of marine toxins in mussels and oysters grown in four different shellfish harvesting areas in the region. Shellfish were collected and subjected to analysis for ASP, PSP and lipophilic toxins, as well as a suite of non-EU regulated toxins such as tetrodotoxin and selected cyclic imines. Results revealed the presence of low levels of PSP toxins in oysters throughout the study period. Overall, total toxicities reached a maximum of 10% of the EU regulatory limit of 800 μg STX eq/kg. Toxin profiles were similar to those reported from the 1980 outbreak. No evidence was found for significant levels of ASP and lipophilic toxins, although some cyclic imines were detected, including gymnodimine. The results indicated that the risk to shellfish consumers during this specific study period would have been low. However, with historical evidence for extremely high levels of PSP toxins in molluscs, there is a strong need for routine surveillance of shellfish production areas for marine toxins, in order to mitigate against human health impacts resulting from unexpected harmful algal blooms, with potentially devastating socio-economic consequences.

Quality aspects of Crassostrea gigas (Thunberg, 1793) reared in the Varano Lagoon (southern Italy) in relation to marketability

Shellfish culture, based on ecological and market assessment, is considered a driving force for socio-economic change in ecologically complex coastal systems such as lagoons throughout the Mediterranean area. To diversify fish production, the Pacific oyster Crassostrea gigas was cultured at commercial farms in the Varano Lagoon (SE Italy). The aims of this study were to evaluate through four condition indices (CI, CICG, CIE and AFNOR index), the Polydora index (PI), lipid content, quality and market aspects of oysters reared at two different sites (FO and LA) of the Varano Lagoon, which are characterized by different hydrodynamic conditions. The results of this study highlighted the potential economic benefits associated with sustainable aquaculture development in the Varano Lagoon, proving that the area surrounding the LA site was more suitable for oyster culture, reaching commercial size (60 mm) in a shorter time (6–8 months). Higher growth performance of oysters was observed in the spring, when the nutrient availability positively affected the feeding response of suspension feeders. The opposite was found in winter and in summer, when the decrease in growth could be due to the reduction of nutrient and to the increase of salinity, TSM and ISM. The presence of the mud blister worm (Polydora sp.) during rearing could be a real problem, as it damages oyster market value and threatens serious financial loss to the local farmers.

Effect of pea crab Pinnotheres vicajii (Chhapgar, 1957) on immunocompetence of bivalve Paphia malabarica (Chemnitz, 1782)

The endosymbiont-host relationship between a pea crab and its bivalve host has been studied previously using bivalve's multi-physiological parameters. The present study is first of its kind that uses hemocyte's immune functionality to evaluate the symbiotic relationship between bivalve Paphia malabarica and its symbiont crab, Pinnotheres vicajii. The sampling was carried out at two stations (differed in nutrient concentration, productivity, and bacterial abundance) located along the southwest coast of India. The results showed lower immunocompetence in the case of bivalves infested with pea crabs. The lowering of hemocyte population was the most prominent and perhaps the initial reaction in response to focal inflammation or wound inflicted by the pea crabs. A significant lowering of phagocytosis, lysozyme, and esterase activity was also observed, indicating the detrimental impact of crab infestation. Interestingly, no significant correlation was found between parasitism and condition index despite the lower immunocompetence, validating the effectiveness of using hematological parameters in comparison to other life-history traits. This indicates that the immune parameters being directly related to the organism's metabolic state can elucidate the early effect of stressors, therefore, proving to be a better proxy for understanding a host-pathogen relationship. Disparity found in bivalve's immunocompetence between the sampling sites could be linked to either variation in environmental parameters, the size of the symbiont or the infection level. Our preliminary results provide a direction towards examining immunodepression in parasitized bivalves by considering ex-situ controlled parasitism induction along with varying environmental conditions. In view of this, efforts must be directed towards minimizing pea crab's outbreaks, especially in cultivated shellfish farms. Future studies should elucidate molecular mechanisms involved in the immunocompetence of P. malabarica, hosting the parasitic pea crabs.

To treat or not to treat: a quantitative review of the effect of biofouling and control methods in shellfish aquaculture to evaluate the necessity of removal

The global growth of farmed shellfish production has resulted in considerable research investigating how biofouling compromises farm productivity. Shellfish fitness can be compared between fouled stock and stock which has undergone treatment. As treatment options are often harsh, they may deleteriously affect stock. The projected impact of biofouling may therefore be confounded by the impact of treatments. Given the substantial cost of fouling removal, some have questioned the necessity of biofouling mitigation strategies. Meta-analysis revealed that biofouling typically reduces shellfish fitness. However, the fitness of treated stock was often lower or equal to fouled control stock, indicating that many common antifouling (AF) strategies are ineffective at enhancing farm productivity. Overall, caution and diligence are required to successfully implement biofouling mitigation strategies. The need remains for increased passive prevention approaches and novel AF strategies suitable for shellfish culture, such as strategic siting of bivalve farms in areas of low biofouling larval supply.

Metabarcoding and post-sampling strategies to discover non-indigenous species: A case study in the estuaries of the central south Bay of Biscay

Estuaries are highly productive habitats that generate more organic material than other areas of comparable size, such as forests, meadows or agricultural lands. They exhibit high biodiversity and host relevant species, which can be at risk because these areas are most affected by human activities. In this study, environmental DNA (eDNA) and metabarcoding analyses were performed in two estuaries within the Bay of Biscay that are important in terms of seafood production (Ría del Eo and Ría de Villaviciosa, Asturias, Northern Spain). The main goal was to assess the potential of these novel tools to detect possible introductions of non-indigenous species. Alien genera that might have been introduced through exotic shellfish cultures in these estuaries were detected despite limited sampling. Of the NIS found, Crepidula fornicata was the only one that was already included in the Spanish invasive species catalogue (BOE, 2013). After the initial invasive species detection through the metabarcoding study, post-NGS samplings and classical DNA barcoding were performed, and they confirmed the presence of the highly invasive species C. fornicata in these estuaries. Although metabarcoding still has some drawbacks, such as a lack of universal PCR primers and reference sequences for all the species in the databases as well as frequent false positives, it represents a powerful tool that can facilitate the monitoring and management of these important ecosystems, especially if it is accompanied by post-NGS samplings to confirm species occurrences.

Concentration, risk assessment, and source identification of heavy metals in surface sediments in Yinghai: A shellfish cultivation zone in Jiaozhou Bay, China

To identify the affection of shellfish cultivation on sediment conditions in Yinghai shellfish cultivation zone in Jiaozhou Bay, the concentration, sources, and the potential ecological risk of heavy metals was identified. Results show the range of Cu, Zn, Pb, Cd, Cr, Hg, As and Mn are 10.15–29.98, 35.95–111.22, 12.44–27.68, 0.08–0.22, 18.03–82.32, 0.04–0.13, 4.02−7.72 and 574.07–839.33mg·kg−1. Shellfish cultivation influences heavy metal content to some extent. Principal component analysis suggests the accumulation of Zn, Mn, and Cu mainly results from agricultural and industrial actions, Pb from traffic pollution, and Hg from coal combustion. According to the potential ecological index, there is medium and higher ecological risk of contamination by Hg and Cd, which indicates that the study area suffers from varying degrees of heavy metal pollution.

수하식 패류 양식장이 저서동물군집에 미치는 영향

수하식 패류 양식장이 저서동물군집에 미치는 영향

Coastal debris analysis in beaches of Chonburi Province, eastern of Thailand as implications for coastal conservation

This study quantified coastal debris along 3 beaches (Angsila, Bangsaen, Samaesarn) in eastern coast of Thailand. Debris samples were collected from lower and upper strata of these beaches during wet and dry seasons. The results showed that Bangsaen had the highest average debris density (15.5m−2) followed by Samaesarn (8.10m−2), and Angsila (5.54m−2). Among the 12 debris categories, the most abundant debris type was plastics (>45% of the total debris) in all beach locations. Coastal debris distribution was related to economic activities in the vicinity. Fishery and shell-fish aquaculture activities were primary sources of debris in Angsila while tourism activities were main sources in Bangsaen and Samaesarn. Site-specific pollution control mechanisms (environmental awareness, reuse and recycling) are recommended to reduce public littering. Management actions in Angsila should focus on fishery and shell-fish culture practices, while Bangsaen and Samaesarn should be directed toward leisure activities promoting waste management.

Can greening of aquaculture sequester blue carbon?

Globally, blue carbon (i.e., carbon in coastal and marine ecosystems) emissions have been seriously augmented due to the devastating effects of anthropogenic pressures on coastal ecosystems including mangrove swamps, salt marshes, and seagrass meadows. The greening of aquaculture, however, including an ecosystem approach to Integrated Aquaculture-Agriculture (IAA) and Integrated Multi-Trophic Aquaculture (IMTA) could play a significant role in reversing this trend, enhancing coastal ecosystems, and sequestering blue carbon. Ponds within IAA farming systems sequester more carbon per unit area than conventional fish ponds, natural lakes, and inland seas. The translocation of shrimp culture from mangrove swamps to offshore IMTA could reduce mangrove loss, reverse blue carbon emissions, and in turn increase storage of blue carbon through restoration of mangroves. Moreover, offshore IMTA may create a barrier to trawl fishing which in turn could help restore seagrasses and further enhance blue carbon sequestration. Seaweed and shellfish culture within IMTA could also help to sequester more blue carbon. The greening of aquaculture could face several challenges that need to be addressed in order to realize substantial benefits from enhanced blue carbon sequestration and eventually contribute to global climate change mitigation.

The effect of the quality of diet on the functional response of Mytilus galloprovincialis (Lamarck, 1819): Implications for integrated multitrophic aquaculture (IMTA) and marine spatial planning

The integrated multi-trophic aquaculture (i.e., IMTA) is a practice combining organisms with different trophic levels with the final purpose of transforming the continuous waste of food by targeting species into nutrient input for other non-target species. This practice very often involves filter feeders, such as bivalves, by the use of which bioenergetics budgets are strongly influenced by the quality and quantity of different foods. However, to date, scant information is available, to really understand the rebounds of food availability on the growth performances of these harvested biomasses in the natural environment. By choosing the mussel Mytilus galloprovincialis as a model, this study aims to (1) characterize the functional response of the species to define all parameters related to food intake strategies and (2) to investigate how responses change as a function of varying food sources. Laboratory procedures have been designed to evaluate the clearance rates (CR) and assimilation efficiencies (AE) of M. galloprovincialis with varying food concentrations, while different diets (i.e., seagrass, phytoplankton, and pellets) have been provided to investigate how differently they reach saturation. Results show that in the presence of phytoplankton and seagrass as food sources, the feeding strategies of M. galloprovincialis follow a II-type Holling's curve, while it shows a I-type Holling's curve when pellet food is provided. Investigating the behavioural components of functional responses may improve our ability to predict where to place shellfish cultures, as it may be useful in the context of IMTA management and in addressing siting studies. Statement of relevanceOur paper focuses on a question central to understanding and predicting the likely impacts of one among the most important human economic activity like the aquaculture in coastal habitats. The main question deals with the possibility to combine experimental procedures with the new mechanistic functional trait based bioenergetic models in order to effectively predict life history traits of cultivated species.

Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges

Bivalve shellfish have the capacity to accumulate norovirus (NoV) from waters contaminated with human sewage. Consequently, shellfish represent a major vector for NoV entry into the human food chain, leading to gastrointestinal illness. Identification of areas suitable for the safe cultivation of shellfish requires an understanding of NoV behaviour upon discharge of municipal-derived sewage into coastal waters. This study exploited the potential of edible mussels (Mytilus edulis) to accumulate NoV and employed the ISO method for quantification of NoV within mussel digestive tissues. To evaluate the spatial spread of NoV from an offshore sewage discharge pipe, mesh cages of mussels were suspended from moorings deployed in a 9 km2 grid array around the outfall. Caged mussels were retrieved after 30 days and NoV (GI and GII), total coliforms and E. coli enumerated. The experimentally-derived levels of NoV GI and GII in mussels were similar with total NoV levels ranging from 7 × 101 to 1.6 × 104 genome copies g−1 shellfish digestive gland (ΣGI + GII). NoV spread from the outfall showed a distinct plume which matched very closely to predictions from the tidally-driven effluent dispersal model MIKE21. A contrasting spatial pattern was observed for coliforms (range 1.7 × 102 to 2.1 × 104 CFU 100 g−1 shellfish tissue) and E. coli (range 0–1.2 × 103 CFU 100 g−1 shellfish tissue). These data demonstrate that hydrodynamic models may help inform effective exclusion zones for bivalve harvesting, whilst coliform/E. coli concentrations do not accurately reflect viral dispersal in marine waters and contamination of shellfish by sewage-derived viral pathogens.

Species composition and genetic diversity of farmed mussels in British Columbia, Canada

The common blue mussel (Mytilus edulis) was introduced to British Columbia, Canada, in the 1980s as an aquaculture alternative to native mussel species. Since then, the mussel industry in Pacific Canada has expanded and includes operations utilizing traditional methods of broodstock selection based on visual qualitative and quantitative traits. The impacts of hatchery propagation on genetic diversity and implications for animal fitness have been previously studied for other aquatic species, and this study further examines the effect of hatchery production on three M. edulis aquaculture populations in relation to a wild originator population. Prior to microsatellite genetic analysis, animals were identified to species using nuclear markers and were found to contain varying proportions of pure M. edulis as well as other pure species and hybrids from the ‘Mytilus edulis complex’. Subsequently seven microsatellite markers were used to genotype 166 pure adult M. edulis individuals, all of which exhibited high levels of polymorphism. Allele frequencies at multiple loci did not conform to Hardy–Weinberg expectations and substantially less genetic diversity and very low effective population size estimates (Ne, calculated from linkage disequilibrium) were observed in farmed populations compared to the wild reference population. All populations were found to be genetically distinct based on FST estimates. Mean allelic richness was approximately three times higher in the wild reference population than the three farmed populations (21 compared to 7.51, 7.91 in the two populations selecting for size and 8.24 in the population selecting for a colour morph). Observed heterozygosity was not significantly decreased in the cultured colour morph population, but was significantly different in the two other culture populations in comparison to the wild group. Reduced genetic diversity of the aquaculture populations is likely at least partially due to small effective breeding groups during hatchery propagation, creating genetic drift over successive generations. Speculations about the influence of broodstock selection practices are tentative and should be addressed in further temporal studies. These results indicate the need for the effective management of hatchery operations, the importance of rigorous site inventory, genetic broodstock characterization, and that ideally pedigree programs should be developed to help maintain healthy and productive shellfish culture populations with adaptive fitness capacity. Statement of relevanceHatchery methods impact species purity and genetic diversity.

Recruitment from an egg bank into the plankton in Baisha Bay, a mariculture base in Southern China

The potential recruitment of resting eggs of calanoid copepods and rotifers to planktonic populations was investigated in the surface and sub-surface sediments of three mariculture zones: an integrated seaweed Gracilaria lemaneiformis and shellfish cultivation area (G), a fish cultivation area (F), and a shellfish cultivation area (S), as well as the sediments of a nearby control sea area (C) in a mariculture base in Southern China. The potential recruitment of copepod and rotifer eggs in the sediments of C and G was significantly higher than in F and S. Potential recruitment in the sub-surface sediments of F and S was not observed, suggesting that fish and shellfish mariculture may be responsible for this decrease. The hatching success of resting eggs of copepods and rotifers was affected by mariculture type, and that large-scale seaweed cultivation may offset the adverse effect of fish and shellfish cultivation on the resting eggs if integrated cultivation is adopted.