Literature on Ross Sea zooplankton is limited, although it is the most productive system and has the highest biomass of phytoplankton in the Southern Ocean. Energy transfer within the food web and response of continental shelf food web to climate change depend on the knowledge of the density and distribution of zooplankton. We evaluated its density, composition, spatial distribution and their potential relations with environmental factors and specific water mass presence. Particular attention was given to copepods. Mesozooplankton samples were collected between 14 January and February 11, 2017 from 14 stations in the western Ross Sea and Terra Nova Bay, while other micronekton samplings were completed at 6 stations. Results highlighted three pools of stations: one inside Terra Nova Bay with the highest densities, one on the platform with lower mean density, and the third represented by a N–S transept at 175°E with the lowest mean density. This partitioning of the region fit with the grouping of stations according to a ternary plot based on the different percentages of water masses in each station and reflected the similarity of zooplankton. The presence of specific water masses and their contribution in the upper 200 m influences zooplankton biodiversity and density. A phylogenetic tree of the zooplankton was constructed to analyse the distance among the observed taxa. The area located near the coast exhibited the highest degree of phylogenetic overdispersion. In coastal waters, typical copepod species constituted the main part of the neritic zooplankton of Terra Nova Bay and Ross Sea. Oithona similis was the most abundant species both in coastal and offshore sectors, followed by pteropods, polychaetes and euphausiids.