Shaping Biodiversity Research Articles

Local and regional drivers influence how aquatic community diversity, resistance and resilience vary in response to drying

Disturbance events govern how the biodiversity of ecological communities varies in both space and time. In freshwater ecosystems, there is evidence that local and regional‐scale drivers interact to influence ecological responses to drying disturbances. However, most research provides temporal snapshots at the local scale, whereas few studies encompass a gradient of drying severity spanning multiple years. Using a dataset of rare spatiotemporal extent and detail, we demonstrate how independent and interacting local and regional‐scale factors drive shifts in the α and β diversities of communities in dynamic river ecosystems. We examined aquatic invertebrate assemblage responses to hydrological variability (as characterized by monthly observations of instream conditions) at 30 sites over a 12‐year period encompassing typical years and two severe drought disturbances. Sites varied in their disturbance regimes and hydrological connectivity at both local (i.e. site‐specific) and regional (i.e. river catchment) scales. Whereas α diversity was mainly influenced by local factors including flow permanence and the temporal extent of ponded and dry conditions, both temporal and spatial β diversities also responded to regional‐scale metrics such as the spatial extent of flow and hydrological connectivity. We observed stronger local negative responses for taxa with lower capacities to tolerate drying (i.e. resistance) and/or to recover after flow resumes (i.e. resilience), whereas taxa with functional traits promoting resilience made an increasing contribution to spatial β diversity as hydrological connectivity declined. As droughts increase in extent and severity across global regions, our findings highlight the functional basis of taxonomic responses to disturbance and connectivity, and thus advance understanding of how drying disturbances shape biodiversity in river networks. Our identification of the role of regional hydrological factors could inform catchment‐scale management strategies that support ecosystem resilience in a context of global change.

Functional Genomics Offers New Tests of Speciation Hypotheses

Speciation is a fundamental process shaping biodiversity. However, existing empirical methods often cannot provide key genetic and functional details required to validate speciation theory. New gene modification technologies can verify the causal functionality of genes with astonishing accuracy, helping resolve questions about how reproductive isolation evolves during speciation.

The interaction between spatial variation in habitat heterogeneity and dispersal on biodiversity in a zooplankton metacommunity

It is hypothesized that biodiversity is maintained by interactions at local and regional spatial scales. Many sustainability plans and management practices reflect the need to conserve biodiversity, yet once these plans are implemented, the ecological consequences are not well understood. By learning how management practices affect local environmental factors and dispersal in a region, ecologists and natural resource managers can better understand the implications of management choices. We investigated the interaction of local and regional scale processes in the built environment, where human-impacts are known to influence both. Our goal was to determine how the interaction between spatial variation in habitat heterogeneity in algal management of urban ponds and dispersal shape biodiversity at local and regional spatial scales. A twelve-week mesocosm study was conducted where pond management and dispersal were manipulated to determine how spatial variation in habitat and dispersal from various source pools influence zooplankton metacommunities in urban stormwater ponds. We hypothesized that dispersal from managed or unmanaged source pools will lead to community divergence and local management practices will act as an environmental filter, both reducing beta diversity between managed ponds and driving compositional divergence. Our results suggest that zooplankton dispersal from managed or unmanaged source pools was important to explaining divergence in community composition. Furthermore, local management of algae marginally reduced compositional turnover of zooplankton among ponds but did not lead to significant divergence in community composition. Management practices may act as strong environmental filters by reducing beta diversity between ponds. As hypothesized, source pool constraints led to compositional divergence and local management practices resulted in reduced compositional turnover between ponds. The results of this study suggest that sustainability and management plans may have complex effects on biodiversity both within and across spatial scales.

What is good for birds is not always good for lichens: Interactions between forest structure and species richness in managed boreal forests

Forestry in the boreal region increasingly replaces natural disturbances in shaping biodiversity. Large-scale removal of small diameter trees (thinning), is ubiquitous in northern European forestry, yet an understanding of how it relates to biodiversity across taxa is lacking. To address this, we examined how two forest structural elements, commonly impacted by forest thinning (i.e. vegetation density in the understory and overstory), are correlated with the species richness of forest-dwelling birds and epiphytic lichens. These taxa were chosen because they likely have opposing habitat demands: epiphytic lichens potentially benefitting from more light in open forests, and birds benefitting from structurally complex forests for foraging, nesting and cover. We used remote sensing tools, already applied in forestry planning, to see if management recommendations could be found that balance the needs of both taxonomic groups within the same forests. Our results show that richness in epiphytic lichens and forest-dwelling birds is not correlated and that a high species richness (~15 birds & ~40 epiphytic lichens) in both taxa is only predicted in the same stand under a specific vertical distribution and density of the forest’s vegetation: this occurs when the vegetation above 3 m is open (to promote epiphytic lichen richness) and below 3 m is dense (to promote bird richness). Dense vegetation up to 7 m above ground has a diverging effect on forest birds (positive) and epiphytic lichens (negative). A larger stem diameter further increases species richness in both taxa. Our study provides results that are directly implementable in forestry planning over large areas with the help of remote sensing tools (LiDAR).

Ecological opportunity and upward prey-predator radiation cascades

A general goal in community ecology and evolutionary biology is to understand how diversity has arisen. In our attempts to reach such goals we become increasingly aware of interacting ecological and evolutionary processes shaping biodiversity. Ecological opportunity and adaptive radiations can, for example, drive diversification in competitive communities but little is known about how such processes propagate through trophic levels in adaptive radiation cascades. I use an eco-evolutionary model of trait-based ecological interactions and micro-evolutionary processes to investigate the macro-evolutionary aspects of predator diversification in such cascades. Prey diversification facilitates predator radiation through predator feeding opportunity and disruptive selection. Predator radiation, however, often disconnects from the prey radiation as the diversification progresses. Only when predators have an intermediate niche width, high predatory efficiency, and high evolutionary potential can radiation cascades be maintained over macro-evolutionary time scales. These results provide expectations for predator response to prey divergence and insight into eco-evolutionary feedbacks between trophic levels. Such expectations are crucial for future studies that aim for a better understanding of how diversity is generated and maintained in complex communities.

Supporting sandy beach conservation through comparative phylogeography: The case of Excirolana (Crustacea: Isopoda) in South Africa

Sandy beach ecosystems are ecologically and culturally important, yet they face a wide range of anthropogenic stressors. Their constituent biodiversity is usually poorly resolved, with numerous instances of cryptic species described. In addition, there are few studies on the spatio-temporal patterns of evolutionary diversity, although these are vital for unravelling historical and contemporary processes acting to shape biodiversity, with measures of molecular diversity and differentiation providing important insights towards the conservation and management of beach ecosystems. Here we utilise a comparative phylogeographic approach to describe the mtDNA COI variation of two co-distributed Excirolana (Crustacea, Isopoda) sister-species in South Africa. We found that both species showed medium to high population genetic structure, with many populations isolated from each other. In addition, we describe two deeply divergent lineages for both species in the eastern parts of their ranges, which may constitute two additional Excirolana species in South Africa. We show that populations on the range edge for both species have lower genetic diversity than in the core. Our results on the divergent patterns of molecular diversity, in addition to the high levels of population divergence, highlight the need for the inclusion of molecular indices into conservation planning. This ensures safeguarding not only patterns of species occurrence, but also genetic diversity, critical to maximising resilience of sandy beach species in a changing world.

Investigating Wood Decaying Fungi Diversity in Central Siberia, Russia Using ITS Sequence Analysis and Interaction with Host Trees

Wood-decay fungi (WDF) play a significant role in recycling nutrients, using enzymatic and mechanical processes to degrade wood. Designated as a biodiversity hot spot, Central Siberia is a geographically important region for understanding the spatial distribution and the evolutionary processes shaping biodiversity. There have been several studies of WDF diversity in Central Siberia, but identification of species was based on morphological characteristics, lacking detailed descriptions and molecular data. Thus, the aim of this study was to identify WDF in Central Siberia, regarding the degradation of host trees based on both morphological and molecular analyses. We collected 106 WDF samples from Krasnoyarsk and the Republic of Khakassia in 2014 and 2017, and identified a total of 52 fungal species from six main host tree genera. In order to assess the host preference of the WDF, we examined previous literature, and data from this study. We confirmed a division in host preference of WDF between gymnosperms and angiosperms. DNA-based identification and host preference assessment of the WDF provide preliminary data on WDF diversity and their role in nutrient cycles in the ecosystem of Central Siberia. To fully understand WDF diversity in Central Siberia, continuous long-term surveys, including DNA sequence data, are needed.

The rise of a marine generalist predator and the fall of beta diversity.

Determining the importance of physical and biological drivers in shaping biodiversity in diverse ecosystems remains a global challenge. Advancements have been made towards this end in large marine ecosystems with several studies suggesting environmental forcing as the primary driver. However, both empirical and theoretical studies point to additional drivers of changes in diversity involving trophic interactions and, in particular, predation. Moreover, a more integrated but less common approach to the assessment of biodiversity changes involves analyses of spatial β diversity, whereas most studies to date assess only changes in species richness (α diversity). Recent research has established that when cod, a dominant generalist predator, was overfished and collapsed in a northwest Atlantic food web, spatial β diversity increased; that is, the spatial structure of the fish assemblage became increasingly heterogeneous. If cod were to recover, would this situation be reversible, given the inherent complexity and non-linear dynamics that typify such systems? A dramatic increase of cod in an ecologically similar large marine ecosystem may provide an answer. Here we show that spatial β diversity of fish assemblages in the Barents Sea decreased with increasing cod abundance, while decadal scale changes in temperature did not play a significant role. These findings indicate a reversibility of the fish assemblage structure in response to changing levels of an apex predator and highlight the frequently overlooked importance of trophic interactions in determining large-scale biodiversity patterns. As increased cod abundance was largely driven by changes in fisheries management, our study also shows that management policies and practices, particularly those involving apex predators, can have a strong effect in shaping spatial diversity patterns, and one should not restrict the focus to effects of climate change alone.

Linking Landscape Ecology and Macroecology by Scaling Biodiversity in Space and Time

Despite the decades-long recognition of the importance of scaling in ecology, our knowledge about many ecological patterns and processes is still largely restricted to particular spatial and temporal scale domains with relatively narrow ranges. There is no exception when it comes to the study of biodiversity, one of the most important and active research fields in ecology. Increasing work suggests that such narrow ranges of scales are in most cases inadequate for addressing conservation challenges associated with biodiversity change. The need for understanding how biodiversity is shaped and will change across different scales is stronger than ever. Here, we review recent progresses of up-scaling and down-scaling biodiversity in the context of global environmental change, with focus on two relatively large spatial scale domains, i.e., the landscape and macroecological scales. Landscape ecology and macroecology are both active, but so-far poorly connected research fields. They share a common central motivation of unraveling spatial patterning of biodiversity and the underlying mechanisms. Our literature review suggests that landscape-scale processes may exert unexpected up-scaling effects to shape biodiversity patterns at macroecological scales, while macroecological processes may generate a range of down-scaling effects on landscape biodiversity. Specifically, although there is a lack of consensus on the underlying mechanisms, it is likely that landscape processes scale up through connectivity and feedback loops within and across landscapes to affect macroecological biodiversity responses. On the other hand, the down-scaling effects of macroecological processes on biodiversity is often confounded with small-scale processes, leading to various responses inconsistent with direct down-scaling extrapolations. In addition, the temporal dimension is indispensable to investigating effects and mechanisms of cross-scale processes. Specifically, long-term (decades and beyond) perspectives are necessary for re-evaluating ecological knowledge obtained from biodiversity responses to short-term environmental changes and recognizing historical legacies of both landscape and macroecological processes on biodiversity at the two spatial scales. Overall, scaling analyses of ecological processes across spatial extents ranging from small habitats to the globe have revealed biodiversity responses to anthropogenic environmental changes as inconsistent with assumptions and extrapolations based on extant ecological knowledge at a few fixed scales. Such analyses are needed to better inform conservation actions and planning practiced mainly at local to macroecological scales. We suggest that elucidating cross-scaling mechanisms and accumulating long-term time series at multiple spatial scales are key to linking landscape ecology and macroecology in terms of biodiversity dynamics. Such efforts would be an important contribution to the ecological basis for managing biodiversity change in the Anthropocene, as these dynamics involve multiple up-scaling and down-scaling processes over time.

Correction to 'Microbes and macro-invertebrates show parallel β-diversity but contrasting α-diversity patterns in a marine natural experiment'.

Documenting ecological patterns across spatially, temporally and taxonomically diverse ecological communities is necessary for a general understanding of the processes shaping biodiversity. A major gap in our understanding remains the comparison of diversity patterns across a broad spectrum of evolutionarily and functionally diverse organisms, particularly in the marine realm. Here, we aim to narrow this gap by comparing the diversity patterns of free-living microbes and macro-invertebrates across a natural experiment provided by the marine lakes of Palau: geographically discrete and environmentally heterogeneous bodies of seawater with comparable geological and climatic history, and a similar regional species pool. We find contrasting patterns of α-diversity but remarkably similar patterns of β-diversity between microbial and macro-invertebrate communities among lakes. Pairwise dissimilarities in community composition among lakes are positively correlated between microbes and macro-invertebrates, and influenced to a similar degree by marked gradients in oxygen concentration and salinity. Our findings indicate that a shared spatio-temporal and environmental context may result in parallel patterns of β-diversity in microbes and macro-invertebrates, in spite of key trait differences between these organisms. This raises the possibility that parallel processes also influence transitions among regional biota across the tree of life, at least in the marine realm.

Elucidating stygofaunal trophic web interactions via isotopic ecology.

Subterranean ecosystems host highly adapted aquatic invertebrate biota which play a key role in sustaining groundwater ecological functioning and hydrological dynamics. However, functional biodiversity studies in groundwater environments, the main source of unfrozen freshwater on Earth, are scarce, probably due to the cryptic nature of the systems. To address this, we investigate groundwater trophic ecology via stable isotope analysis, employing δ13C and δ15N in bulk tissues, and amino acids. Specimens were collected from a shallow calcrete aquifer in the arid Yilgarn region of Western Australia: a well-known hot-spot for stygofaunal biodiversity. Sampling campaigns were carried out during dry (low rainfall: LR) and the wet (high rainfall: HR) periods. δ13C values indicate that most of the stygofauna shifted towards more 13C-depleted carbon sources under HR, suggesting a preference for fresher organic matter. Conversion of δ15N values in glutamic acid and phenylalanine to a trophic index showed broadly stable trophic levels with organisms clustering as low-level secondary consumers. However, mixing models indicate that HR conditions trigger changes in dietary preferences, with increasing predation of amphipods by beetle larvae. Overall, stygofauna showed a tendency towards opportunistic and omnivorous habits-typical of an ecologically tolerant community-shaped by bottom-up controls linked with changes in carbon flows. This study provides baseline biochemical and ecological data for stygofaunal trophic interactions in calcretes. Further studies on the carbon inputs and taxa-specific physiology will help refine the interpretation of the energy flows shaping biodiversity in groundwaters. This will aid understanding of groundwater ecosystem functioning and allow modelling of the impact of future climate change factors such as aridification.

Microbes and macro-invertebrates show parallel β-diversity but contrasting α-diversity patterns in a marine natural experiment.

Documenting ecological patterns across spatially, temporally and taxonomically diverse ecological communities is necessary for a general understanding of the processes shaping biodiversity. A major gap in our understanding remains the comparison of diversity patterns across a broad spectrum of evolutionarily and functionally diverse organisms, particularly in the marine realm. Here, we aim to narrow this gap by comparing the diversity patterns of free-living microbes and macro-invertebrates across a natural experiment provided by the marine lakes of Palau: geographically discrete and environmentally heterogeneous bodies of seawater with comparable geological and climatic history, and a similar regional species pool. We find contrasting patterns of α-diversity but remarkably similar patterns of β-diversity between microbial and macro-invertebrate communities among lakes. Pairwise dissimilarities in community composition among lakes are positively correlated between microbes and macro-invertebrates, and influenced to a similar degree by marked gradients in oxygen concentration and salinity. Our findings indicate that a shared spatio-temporal and environmental context may result in parallel patterns of β-diversity in microbes and macro-invertebrates, in spite of key trait differences between these organisms. This raises the possibility that parallel processes also influence transitions among regional biota across the tree of life, at least in the marine realm.

Abrupt Change in Climate and Biotic Systems.

Fifty years ago, Willi Dansgaard and colleagues discovered several abrupt climate change events in Greenland during the last glacial period. Since then, several ice cores retrieved from the Greenland ice sheet have verified the existence of 25 abrupt climate warming events now known as Dansgaard-Oeschger events. These events are characterized by a rapid 10-15°C warming over a few decades followed by a stable period of centuries or millennia before a gradual return to full glacial conditions. Similar warming events have been identified in other paleo-archives in the Northern hemisphere. These findings triggered wide interest in abrupt climate change and its impact on biological diversity, but ambiguous definitions have constrained our ability to assign biotic responses to the different types of climate change. Here, we provide a coherent definition for different types of climatic change, including 'abrupt climate change', and a summary of past abrupt climate-change events. We then review biotic responses to abrupt climate change, from the genetic to the ecosystem level, and show that abrupt climatic and ecological changes have been instrumental in shaping biodiversity. We also identify open questions, such as what causes species resilience after an abrupt change. However, identifying causal relationships between past climate change and biological responses remains difficult. We need to formalize and unify the definition of abrupt change across disciplines and further investigate past abrupt climate change periods to better anticipate and mitigate the impacts on biodiversity and society wrought by human-made climate change.

Snakehead (Teleostei: Channidae) diversity and the Eastern Himalaya biodiversity hotspot

The collision of the Indian and Eurasian landmasses in the Cenozoic was a decisive factor in shaping biodiversity patterns in Southern and Southeastern Asia. While most studies thus far have focused on the biotic interchange between India and Eurasia and evolutionary diversification on or around the Tibetan Plateau, little attention has been paid to the biodiversity buildup in the Eastern Himalaya biodiversity hotspot (EHH) which harbors over 540 freshwater fish species with a high degree of endemicity. An important component of the regional ichthyofauna are snakehead fishes of the family Channidae comprising throughout their African‐ Asian distribution 47 valid species, but a poorly known species‐level diversity. In order to evaluate channid intrarelationships and biogeography, a temporal and geographic framework of channid evolution in conjunction with a critical reevaluation of the channid fossil record is warranted. Based on molecular data, we provide a comprehensive species‐level phylogeny based on 223 channid individuals belonging to 37 species and one additional currently undescribed species. The first split within channids separates the African genus Parachanna from the Asian genus Channa which can be divided into eight distinct species groups (Argus, Asiatica, Gachua, Lucius, Marulius, Micropeltes, Punctata, and Striata groups). Large intraspecific divergences were observed within several species and potentially indicate additional species‐level diversity. Almost 40% of the channid species are narrow‐range endemics belonging to the Gachua group. These are found in the EHH making this area an outstanding hotspot for endemic channid diversity. The large majority of the EHH endemics are restricted to the southern foothills of the Eastern Himalaya and the Shillong‐Mikir Hills Plateau, areas west of the Indoburman Ranges. Our results reveal complex and difficult to interpret biogeographic patterns indicating that both vicariance and dispersal events have potentially been responsible in shaping current distribution patterns in Asian channids. We recognize †Parachanna fayumensis as the oldest reliable channid fossil and argue that the three oldest so‐called channid fossils (i.e., †Eochanna chlorakkiensis, †Anchichanna kuldanensis, and †Ophiocephalus lydekkeri) lack clear diagnostic features that would allow them to be unequivocally placed within Channidae.

Growth–trait relationships in subtropical forest are stronger at higher diversity

Abstract Understanding how species diversity affects plant performance is a central question in biodiversity–ecosystem functioning (BEF) research. At the community level, functional trait means and trait dissimilarities have been used to explain biodiversity effects, but with mixed success. To disentangle how functional traits explain community growth and underpin biodiversity–ecosystem functioning relationships, we should elucidate how plant traits affect individual growth across species richness levels, because the role of functional traits on growth depends on the ecological context of the individual. We addressed this topic by using detailed data of twelve functional traits and annual growth for 529 individual trees of 31 species at five species‐richness levels in a large forest biodiversity experiment in south‐east China from 4 to 9 years after planting. Our analyses show first that individual trait values can change with species richness, indicating that trait values can change due to the biotic context. Secondly, we show that early tree growth is more strongly affected by traits than by species richness. Finally, our data show that growth–trait relationships can change with species richness and with forest age. Trait effects on growth are more pronounced at higher richness levels, indicating that measuring traits on individual trees across richness levels can improve growth predictions and inference of BEF relationships that are shaped by functional traits. Synthesis. This study shows that functional trait values and their effect on individual tree growth depend on species richness. Our data support the notion that to elucidate how functional traits shape biodiversity–ecosystem functioning relationships, an important step is to consider the biotic context of individual trees within a community. We have made an initial step by analysing how functional traits affect individual‐tree growth in a diversity‐dependent manner and future research should continue by elucidating the role of traits on tree–tree interactions across diversity levels.

Accelerated diversifications in three diverse families of morphologically complex lichen-forming fungi link to major historical events

Historical mass extinction events had major impacts on biodiversity patterns. The most recent and intensively studied event is the Cretaceous – Paleogene (K-Pg) boundary (ca. 66 million years ago [MYA]). However, the factors that may have impacted diversification dynamics vary across lineages. We investigated the macroevolutionary dynamics with a specific focus on the impact of major historical events such as the K-Pg mass extinction event on two major subclasses – Lecanoromycetidae and Ostropomycetidae – of lichen-forming fungi and tested whether variation in the rate of diversification can be associated with the evolution of a specific trait state - macrolichen. Our results reveal accelerated diversification events in three families of morphologically complex lichen-forming fungi – Cladoniaceae, Parmeliaceae, and Peltigeraceae – which are from the subclass Lecanoromycetidae and mostly composed of macrolichens, those that form three dimensional structures. Our RTT plot result for the subclass Lecanoromycetidae also reveals accelerated diversification. Changes in diversification rates occurred around the transition between Mesozoic and Cenozoic eras and was likely related to the K-Pg mass extinction event. The phylogenetic positions for rate increases estimated based on marginal shift probability are, however, scattered from 100 to 40 MYA preventing us from making explicit inference. Although we reveal that the phenotypic state of macrolichens is associated with a higher diversification rate than microlichens, we also show that the evolution of macrolichens predated the K-Pg event. Furthermore, the association between macrolichens and increased diversification is not universal and can be explained, in part, by phylogenetic relatedness. By investigating the macroevolutionary dynamics of lichen-forming fungi our study provides a new empirical system suitable to test the effect of major historical event on shaping biodiversity patterns and to investigate why changes in biodiversity patterns are not in concordance across clades. Our results imply that multiple historical events during the transition from Mesozoic to Cenozoic eras, including the K-Pg mass extinction event, impacted the evolutionary dynamics in lichen-forming fungi. However, future studies focusing on individual lichen-forming fungal families are required to ascertain whether diversification rates are associated with growth form and certain geological events.

Interactome‐based abiotic and biotic impacts on biodiversity of plankton communities in disturbed wetlands

AbstractAimDespite great efforts for conservation, biodiversity in wetland ecosystems is still losing at an alarming rate. Thus, it is crucial to deeply understand ecological processes and mechanisms that potentially affect the loss of biodiversity.LocationSanjiang wetland in Sanjiang floodplain, north‐east China.MethodsBiological samples and environmental data were collected from five approximate habitats under different anthropogenic disturbance levels from Sanjiang wetland. Biodiversity of plankton communities (i.e., bacterioplankton and zooplankton) was characterized by high‐throughput sequencing‐based metabarcoding. Multidisciplinary methods including interactome‐based construction of scale‐free networks were employed to examine the complex biotic interactions and abiotic influence on plankton biodiversity.ResultsBoth environmental variables and community composition of plankton communities varied significantly among five habitats. Environmental filtering was identified as the dominant ecological process that drove the distinct community composition and geographical distribution of biodiversity. However, the significantly influential factors were different for bacterioplankton (e.g., pH and As) and zooplankton communities (e.g., NH4 and TP). In total, environmental factors could explain approximately 30% of community variation for both types of plankton communities. Based on interactome networks, more organism‐associated edges were identified than environment‐associated edges. Such a pattern suggests that, in addition to environmental influence, biotic interactions also play a crucial role to shape biodiversity variation.Main conclusionsBoth abiotic factors and biotic interactions largely contributed to the distinct composition and geographical distribution of bacterioplankton and zooplankton communities in Sanjiang wetland. Therefore, the interactome‐based investigation is recommended to examine synthesized impacts of abiotic and biotic variables, and such a comprehensive survey can largely facilitate our understanding of ecological processes and associated mechanisms that drive the loss of wetland biodiversity. Results from comprehensive surveys can help identify conservation priorities and improve the predictability of conservation programmes.

Cryptic dispersal networks shape biodiversity in an invaded landscape.

Species interact with the physical world in complex ways, and life-history strategies could cause species to differ in how they experience the connectedness of the same landscape. As a consequence, dispersal limitation might be present but not captured by distance-based measures of connectivity. To test these ideas, we surveyed plant communities that live on discrete patches of serpentine habitat embedded within an invaded nonserpentine habitat matrix. Species in these communities differ in dispersal mode (gravity, animal, or wind); thus we used satellite imagery to quantify landscape features that might differentially influence connectivity for some dispersal- mode groups over others (surface streams, animal paths). Our data yielded two key insights: first, dispersal limitation appeared to be absent using a conventional distance-based measure of connectivity, but emerged after considering forms of landscape connectivity relevant to each dispersal mode. Second, the landscape variables that emerged as most important to each dispersal mode were generally consistent with our predictions based on species' putative dispersal vectors, but also included unexpected interactive effects. For example, the richness of animal-dispersed species was positively associated with animal connectivity when patches were close in space, but when patches were isolated, animals had a strong negative effect. This finding alludes to the reduced ability of animals to disperse seeds between suitable patches in invaded landscapes because of increased inter-patch distances. Real landscapes include complex spatial flows of energy and matter, which, as our work demonstrates, sets up ecological opportunity for organisms to differ in how they disperse in a common landscape.

Coevolutionary dynamics shape the structure of bacteria-phage infection networks.

Coevolution-reciprocal evolutionary change among interacting species driven by natural selection-is thought to be an important force in shaping biodiversity. This ongoing process takes place within tangled networks of species interactions. In microbial communities, evolutionary change between hosts and parasites occurs at the same time scale as ecological change. Yet, we still lack experimental evidence of the role of coevolution in driving changes in the structure of such species interaction networks. Filling this gap is important because network structure influences community persistence through indirect effects. Here, we quantified experimentally to what extent coevolutionary dynamics lead to contrasting patterns in the architecture of bacteria-phage infection networks. Specifically, we look at the tendency of these networks to be organized in a nested pattern by which the more specialist phages tend to infect only a proper subset of those bacteria infected by the most generalist phages. We found that interactions between coevolving bacteria and phages become less nested over time under fluctuating dynamics, and more nested under arms race dynamics. Moreover, when coevolution results in high average infectivity, phages and bacteria differ more from each other over time under arms race dynamics than under fluctuating dynamics. The tradeoff between the fitness benefits of evolving resistance/infectivity traits and the costs of maintaining them might explain these differences in network structure. Our study shows that the interaction pattern between bacteria and phages at the community level depends on the way coevolutionunfolds.

Genomes of skipper butterflies reveal extensive convergence of wing patterns

For centuries, biologists have used phenotypes to infer evolution. For decades, a handful of gene markers have given us a glimpse of the genotype to combine with phenotypic traits. Today, we can sequence entire genomes from hundreds of species and gain yet closer scrutiny. To illustrate the power of genomics, we have chosen skipper butterflies (Hesperiidae). The genomes of 250 representative species of skippers reveal rampant inconsistencies between their current classification and a genome-based phylogeny. We use a dated genomic tree to define tribes (six new) and subtribes (six new), to overhaul genera (nine new) and subgenera (three new), and to display convergence in wing patterns that fooled researchers for decades. We find that many skippers with similar appearance are distantly related, and several skippers with distinct morphology are close relatives. These conclusions are strongly supported by different genomic regions and are consistent with some morphological traits. Our work is a forerunner to genomic biology shaping biodiversity research.