Shallow Water Coral Reefs Research Articles

Concentrations, sources, and biological consumption of acrylate and DMSP in the tropical Pacific and coral reef ecosystem in Mo’orea, French Polynesia

Shallow-water coral reefs hold large quantities of acrylate and its precursor dimethylsulfoniopropionate (DMSP), but production and removal processes for these compounds are poorly characterized. Here we determined the concentrations and cycling of acrylate and DMSP in a transect from a coral reef ecosystem to the open ocean, 2 km beyond the reef in Mo’orea, French Polynesia, during April 2018. Concentrations of dissolved acrylate and DMSP were low throughout the reef-ocean transect, ranging from 0.8–3.9 nM and 0.2–3.0 nM, respectively, with no difference observed between the coral reef and open ocean when comparing mean concentrations (± std dev) of dissolved acrylate (1.7 ± 0.7 vs 2.3 ± 0.8 nM) or DMSP (0.9 ± 0.7 vs 1.3 ± 0.6 nM). In the coral reef, dissolved acrylate was rapidly taken up by the heterotrophic community with a fast turnover time averaging ~ 6 h, six times faster than in the open ocean, and nearly as fast as the average turnover time of dissolved DMSP (~ 3 h). A clear diel trend was observed for the heterotrophic consumption of dissolved acrylate and DMSP in the coral reef, with higher uptake rate constants during daylight hours, synchronized with the larger daytime release of acrylate and DMSP from the coral compared to the nighttime release of these compounds. We also measured photochemical production rates of acrylate in Mo’orean waters, but rates were one to two orders of magnitude slower compared to its rates of biological consumption. Coral and macroalgae were the main sources of dissolved acrylate and DMSP to the reef ecosystem. Our results indicate there is rapid turnover of acrylate and DMSP in the coral reef with a tight coupling between production and removal pathways that maintain dissolved concentrations of these two compounds at very low levels. These algal and coral-derived substrates serve as important chemical links between the coral and heterotrophic communities, two fundamental components in the ecological network in coral reefs.

Production of short-chain n-fatty acids in coral reefs in the southern South China Sea since the Late Miocene

The monsoon system modulates surface production in the South China Sea (SCS). The winter monsoon has long been recognized as the primary factor regulating surface production in the northern SCS; however, the role of monsoon remains in debate in the southern SCS. Here, we present a long record of short-chain n -fatty acids ( n -FAs) in reefal carbonates from one deep well (NK1) on an isolated coral atoll (Meiji) in order to provide new insights into the change of surface production in the southern SCS since the Late Miocene (ca. 10.5 Ma). Short-chain n -FAs indicative of total marine organic matter input are rather feasible to reflect the total production associated with mixotrophic reef-building corals that feed on various marine biotas (i.e., phytoplankton, zooplankton and bacteria). By ruling out the significant influence of diagenetic and degradation processes, short-chain n -FAs can be further applied to reconstruct paleo-production in Well NK1 coral reefs. The temporal distribution of short-chain n -FAs changes similarly with many other independent paleo-production records (i.e., Ln(Ba/Ti) and opal) in Well NK1 and adjacent ODP Site 1143, demonstrating the close coupling between coral reef production and surface water production. This occurs through the common factor of nutrients in modulating production of symbiotic autotrophic coralgae and asymbiotic phytoplankton and/or the large heterotrophic dependence of corals on phytoplankton-governed food webs in surface waters. Short-chain n -FAs inferred surface production displays a progressively decreased trend from the Late Miocene to Pliocene (ca. 10.5–2.6 Ma) followed by a substantial increase since the Pleistocene on million-year timescales, which follows the variation of terrigenous supply to the coral atoll and responds almost inversely to the sea-level change. Accordingly, we propose that long-term paleo-production in the southern SCS was associated with terrestrial nutrient input which was controlled by relative sea-level change since the Late Miocene. This study highlights the feasibility of short-chain n -FAs as appropriate production recorders in shallow-water coral reefs which are widespread in tropical-subtropical oceans, providing valuable perspectives on long-term paleo-production evolution in surface waters. • A long coral reef well (NK1) in the southern SCS was studied. • OM-poor coral reef carbonates were decalcified and extracted for biomarkers. • Short-chain n -FAs reflect paleo-production in coral reefs since the Late Miocene. • Long-term production was governed by terrestrial nutrient related to sea level.

Alien hotspot: Benthic marine species introduced in the Brazilian semiarid coast

In this study, we provide a baseline assessment of introduced marine species along the extensive (~600 km) Brazilian semiarid coast. We reported 27 introduced and 26 cryptogenic species. Moreover, the main vectors of introduction were ballast water, shipping lines, oil and gas activities, biofouling, and rafting on plastic debris. The taxa were Ascidiacea (17 species) and Bryozoa (17), followed by Crustacea (6), Mollusca (6), Cnidaria (3), Echinodermata (3), and Porifera (1). Among these invertebrates, some species are recognized as drivers of impacts such as the invasive corals (Tubastraea tagusensis and Tubastraea coccinea), the bivalves Isognomom bicolor and Perna viridis, the crab Charybdis hellerii, the brittle star Ophiothela mirabilis, and, finally, the bryozoan Membraniporopsis tubigera. These species threaten the biodiversity of unique ecosystems such as intertidal sandstone reefs, shallow-water coral reefs, and mesophotic ecosystems. Moreover, the up-to-date results highlight that this region is a hotspot of bioinvasion in the tropical South Atlantic.

'Ten Years After'-a long-term settlement and bioerosion experiment in an Arctic rhodolith bed (Mosselbukta, Svalbard).

Rhodolith beds and bioherms formed by ecosystem engineering crustose coralline algae support the northernmost centres of carbonate production, referred to as polar cold-water carbonate factories. Yet, little is known about biodiversity and recruitment of these hard-bottom communities or the bioeroders degrading them, and there is a demand for carbonate budgets to include respective rates of polar carbonate build-up and bioerosion. To address these issues, a 10-year settlement and bioerosion experiment was carried out at the Arctic Svalbard archipelago in and downslope of a rhodolith bed. The calcifiers recorded on experimental settlement tiles (56 taxa) were dominated by bryozoans, serpulids and foraminiferans. The majority of the bioerosion traces (30 ichnotaxa) were microborings, followed by attachment etchings and grazing traces. Biodiversity metrics show that calcifier diversity and bioerosion ichnodiversity are both elevated in the rhodolith bed, if compared to adjacent aphotic waters, but these differences are statistically insignificant. Accordingly, there were only low to moderate dissimilarities in the calcifier community structure and bioerosion trace assemblages between the two depth stations (46 and 127m), substrate orientations (up- and down-facing) and substrate types (PVC and limestone), in that order of relevance. In contrast, surface coverage as well as the carbonate accretion and bioerosion rates were all significantly elevated in the rhodolith bed, reflecting higher abundance or size of calcifiers and bioerosion traces. All three measures were highest for up-facing substrates at 46m, with a mean coverage of 78.2% (on PVC substrates), a mean accretion rate of 24.6gm-2 year-1 (PVC), and a mean bioerosion rate of -35.1gm-2 year-1 (limestone). Differences in these metrics depend on the same order of factors than the community structure. Considering all limestone substrates of the two platforms, carbonate accretion and bioerosion were nearly in balance at a net rate of -2.5gm-2 year-1 . A latitudinal comparison with previous settlement studies in the North Atlantic suggests that despite the harsh polar environment there is neither a depletion in the diversity of hard-bottom calcifier communities nor in the ichnodiversity of grazing traces, attachment etchings and microborings formed by organotrophs. In contrast, microborings produced by phototrophs are strongly depleted because of limitations in the availability of light (condensed photic zonation, polar night, shading by sea ice). Also, macroborings were almost absent, surprisingly. With respect to carbonate production, the Svalbard carbonate factory marks the low end of a latitudinal gradient while bioerosion rates are similar or even higher than at comparable depth or photic regime at lower latitudes, although this might not apply to shallow euphotic waters (not covered in our experiment), given the observed depletion in bioeroding microphytes and macroborers. While echinoid grazing is particularly relevant for the bioerosion in the rhodolith bed, respective rates are far lower than those reported from tropical shallow-water coral reefs. The slow pace of carbonate production but relatively high rates of bioerosion (both promoted by low carbonate supersaturation states in Arctic waters), in concert with high retention of skeletal carbonates on the seafloor and no calcite cements forming in open pore space created by microborers, suggest a low fossilisation potential for polar carbonates, such as those formed in the Mosselbukta rhodolith beds.

Plasticity of Porites astreoides Early Life History Stages Suggests Mesophotic Coral Ecosystems Act as Refugia in Bermuda

As the devastating impacts of global climate change and local anthropogenic stressors on shallow-water coral reefs are expected to rise, mesophotic coral ecosystems have increasingly been regarded as potential lifeboats for coral survival, providing a source of propagules to replenish shallower reefs. Yet, there is still limited knowledge of the capacity for coral larvae to adjust to light intensities that change with depth. This study elucidates the mechanisms underlying plasticity during early life stages of the coral Porites astreoides that enable survival across broad depth gradients. We examined physiological and morphological variations in larvae from shallow (8–10 m) and mesophotic (45 m) reefs in Bermuda, and evaluated differences in survival, settlement patterns and size among recruits depending on light conditions using a reciprocal ex situ transplantation experiment. Larvae released from mesophotic adults were found to have significantly lower respiration rates and were significantly larger than those derived from shallow adults, indicating higher content of energetic resources and suggesting a greater dispersal potential for mesophotic larvae compared to their shallow counterparts. Additionally, larvae released from mesophotic adults experienced higher settlement success and larger initial spat size compared to larvae from shallow adults, demonstrating a potential connection between parental origin, offspring quality, and recruitment success. Although both shallow and mesophotic larvae exhibited the capacity to survive and settle under reciprocal light conditions, all larvae had higher survival under mesophotic light conditions regardless of parental origin, suggesting that conditions experienced under low light may enable longer larval life, further extending the dispersal period. These results indicate that larvae from mesophotic Porites astreoides colonies are likely capable of reseeding shallow reefs in Bermuda, thereby supporting the Deep Reef Refugia Hypothesis.

Sleuthing cryptic Chromodorids (Mollusca, Nudibranchia): adding to Philippine marine biodiversity

The Verde Island Passage of the Philippines is renowned for its rich marine biodiversity and heterobranch mollusks are demonstrable models of that species richness of the region. Chromodorid nudibranchs represent a particularly rich taxon, with species of Chromodoris being one of the most iconic and abundant taxa in shallow water coral reef environments. Despite being one of the best-documented clades of nudibranch mollusks, recent work has shown that numerous cryptic and pseudocryptic species are abundant in the waters of the Coral Triangle region. This paper reviews the species richness and distribution of Chromodoris species in the Philippines and provides a description of a new species of Chromodoris from the region. Chromodoris alcalai Gosliner, n. sp. is named to honor Dr. Angel Alcala’s 90th birthday and his pioneering contributions to preserving the marine biodiversity of the Philippines. This species is most similar externally to C. dianae Gosliner and Behrens, 1998, with which it was erroneous lumped. Distinctness of molecular data, external morphology and coloration, and internal anatomical features clearly distinguish these two species. KEYWORDS: systematics, Nudibranchia, coral reefs, Indo-Pacific, Coral Triangle

Plastics in Porifera: The occurrence of potential microplastics in marine sponges and seawater from Bocas del Toro, Panamá.

Microplastics (MP) are now considered ubiquitous across global aquatic environments. The ingestion of MP by fish and other marine vertebrates is well studied, but the ingestion of MP by marine invertebrates is not. Sponges (Phylum Porifera) are particularly understudied when it comes to MP ingestion, even though they are widely distributed across benthic habitats, can process large volumes of seawater, and can retain small particles within their water filtration systems. This study examines the presence of potential MP (PMP) in wild marine sponges and seawater collected in Bocas del Toro, Panamá. Subsurface seawater and tissue from six common Caribbean sponge species was collected in Saigon Bay, a heavily impacted, shallow-water coral reef. Seawater samples were filtered onto glass fiber filters to retain any PMP present and sponge tissue was digested with bleach, heated and filtered. Filters were examined using fluorescence microscopy to quantify PMP. An average of 107 ± 25 PMP L–1 was detected in seawater from Saigon Bay with particles ranging in size between 10 μm and ~3,000 μm. The number of PMP found in sponge tissue ranged between 6 ± 4 and 169 ± 71 PMP g–1 of dry tissue. Most particles found in sponge samples were very small (10–20 μm), but fibers greater than 5,000 μm were detected. Our results indicate that PMP exists within the tissues of the sponges we studied, but future studies should confirm the presence of MP in sponges using chemical analysis. Most importantly, the discrepancy between low levels of PMP in our sponge samples and high levels in the surrounding seawater highlights the potential for sponges to resist and/or egest MP. Finally, we provide a critical evaluation of our methods to improve their use in future MP work with benthic marine organisms.

A quantitative comparison of towed-camera and diver-camera transects for monitoring coral reefs

Novel tools and methods for monitoring marine environments can improve efficiency but must not compromise long-term data records. Quantitative comparisons between new and existing methods are therefore required to assess their compatibility for monitoring. Monitoring of shallow water coral reefs is typically conducted using diver-based collection of benthic images along transects. Diverless systems for obtaining underwater images (e.g. towed-cameras, remotely operated vehicles, autonomous underwater vehicles) are increasingly used for mapping coral reefs. Of these imaging platforms, towed-cameras offer a practical, low cost and efficient method for surveys but their utility for repeated measures in monitoring studies has not been tested. We quantitatively compare a towed-camera approach to repeated surveys of shallow water coral reef benthic assemblages on fixed transects, relative to benchmark data from diver photo-transects. Differences in the percent cover detected by the two methods was partly explained by differences in the morphology of benthic groups. The reef habitat and physical descriptors of the site—slope, depth and structural complexity—also influenced the comparability of data, with differences between the tow-camera and the diver data increasing with structural complexity and slope. Differences between the methods decreased when a greater number of images were collected per tow-camera transect. We attribute lower image quality (variable perspective, exposure and focal distance) and lower spatial accuracy and precision of the towed-camera transects as the key reasons for differences in the data from the two methods and suggest changes to the sampling design to improve the application of tow-cameras to monitoring.

Sponge-dwelling fauna: a review of known species from the Northwest Tropical Atlantic coral reefs.

BackgroundWithin tropical shallow-water coral reefs, marine sponges provide microhabitats for a wide range of fauna. Although there have been numerous studies and reports of symbiotic relationships amongst sponges and their associated fauna, those pieces of information are isolated and disconnected. For this reason, based on the available literature, we compiled a species-interaction dataset of coral reef marine sponge-associated fauna known to date.New informationWe introduce a dataset that includes 67 literature items that report 101 species of sponge hosts clustered in 12 Orders having a host/guest interaction with 284 guest species from six Phyla present in the Northwestern Tropical Atlantic coral reefs. This dataset consists of two types of information: 1. Machine-readable data and 2. Human-readable data. These two types of coding improve the scope of the dataset and facilitate the link between machine platforms and human-friendly displays. We also created an interactive visualisation of the species-interactions dataset and of a dynamic Chord Diagram of the host-guest species connections to generate a user-friendly link between the user and the dataset.

Retirement risks: Invasive coral on old oil platform on the Brazilian equatorial continental shelf

The objective of this study was to report, for the first time, the presence of an invasive coral (Tubastraea tagusensis) in an oil platform on the Brazilian equatorial continental shelf. This structure is located more than 1200 km north from other oil and gas structures colonized by this coral. We also discussed the retirement and decommissioning of old biofouling-encrusted oil and gas platforms (~62 platforms) from decreased production and the current oil crisis, exacerbated by the COVID-19 pandemic. This presents an ecological concern due invasive coral range expansion and potential impacts to poorly studied ecosystems such as marginal shallow-water coral reefs and mesophotic ecosystems. It is imperative that mindful risk analysis and rigorous environmental studies must precede the installation of new oil and gas platforms. In addition, decommissioning of retired structures should take into consideration marine restoration and non-indigenous species dispersal, and more specifically, Tubastraea bioinvasion.

Unusual shallow water Devonian coral community from Queensland and its recent analogues from the inshore Great Barrier Reef

Palaeozoic coral communities were dominated by two extinct coral groups: Tabulata and Rugosa. Whilst they are not closely related to modern Scleractinia, they are morphologically convergent, displaying many morphological characters that allow comparisons between recent and ancient coral reef communities. The extensive shallow-water reef communities of the Devonian were generally dominated by stromatoporoid sponges, with corals occupying deeper environments. Here, we describe an unusual, shallow water coral reef community from the Middle Devonian (Givetian, approx. 385 Ma) of the Fanning River area, Queensland, Australia. The coral community is dominated by tabulate corals, but also includes solitary and occasionally colonial rugose corals. Tabulate corals most commonly exhibit foliose and massive morphologies, but encrusting and branching growth forms also occur. The depositional environment was characterized by a shallow water depth, moderate hydrodynamic energy, high sedimentation rate, and high turbidity. Since these environmental factors influence the morphological composition of modern coral communities, we hypothesize that similar environments may result in morphologically equivalent coral assemblages throughout the Phanerozoic. To test this idea, we qualitatively compare the Fanning River reefs with modern scleractinian coral assemblages in a similar environmental setting at Magnetic Island. Both reefs are located in a shallow water less than 10 m deep, with high sediment flux, moderate wave energy, and generally high turbidity. Like Fanning River, Magnetic Island coral communities are dominated by foliose morphologies, with contributions from massive and branching forms. The Fanning River reef, together with previously identified Silurian and Devonian mesophotic coral ecosystems, suggest that Palaeozoic coral assemblages may share many functional characteristics with modern scleractinian reefs in similar environments. Therefore, the geological record of inshore, high turbidity-adapted coral communities can be traced back as far as 385 Ma.

Yes, we can use it: a formal test on the accuracy of low-pass nanopore long-read sequencing for mitophylogenomics and barcoding research using the Caribbean\xa0spiny lobster Panulirus argus

BackgroundWhole mitogenomes or short fragments (i.e., 300–700 bp of the cox1 gene) are the markers of choice for revealing within- and among-species genealogies. Protocols for sequencing and assembling mitogenomes include ‘primer walking’ or ‘long PCR’ followed by Sanger sequencing or Illumina short-read low-coverage whole genome (LC-WGS) sequencing with or without prior enrichment of mitochondrial DNA. The aforementioned strategies assemble complete and accurate mitochondrial genomes but are time consuming and/or expensive. In this study, I first tested whether mitogenomes can be sequenced from long-read nanopore sequencing data exclusively. Second, I explored the accuracy of the long-read assembled genomes by comparing them to a ‘gold’ standard reference mitogenome retrieved from the same individual using Illumina sequencing. Third and lastly, I tested if the long-read assemblies are useful for mitophylogenomics and barcoding research. To accomplish these goals, I used the Caribbean spiny lobster Panulirus argus, an ecologically relevant species in shallow water coral reefs and target of the most lucrative fishery in the greater Caribbean region. ResultsLC-WGS using a MinION ONT device and various de-novo and reference-based assembly pipelines retrieved a complete and highly accurate mitogenome for the Caribbean spiny lobster Panulirus argus. Discordance between each of the long-read assemblies and the reference mitogenome was mostly due to indels at the flanks of homopolymer regions. Although not ‘perfect’, phylogenetic analyses using entire mitogenomes or a fragment of the cox1 gene demonstrated that mitogenomes assembled using long reads reliably identify the sequenced specimen as belonging to P. argus and distinguish it from other related species in the same genus, family, and superorder.ConclusionsThis study serves as a proof-of-concept for the future implementation of in-situ surveillance protocols using the MinION to detect mislabeling in P. argus across its supply chain. Mislabeling detection will improve fishery management in this overexploited lobster. This study will additionally aid in decreasing costs for exploring meta-population connectivity in the Caribbean spiny lobster and will aid with the transfer of genomics technology to low-income countries.

Low oxygen levels caused by Noctiluca scintillans bloom kills corals in Gulf of Mannar, India

Coral reefs around the world are undergoing severe decline in the past few decades. Mass coral mortalities have predominantly been reported to be caused by coral bleaching or disease outbreaks. Temporary hypoxic conditions caused by algal blooms can trigger mass coral mortalities though are reported rarely. In this study in Gulf of Mannar (GoM), southeast India, we report a significant coral mortality caused by a bloom of the ciguatoxic dinoflagellate Noctiluca scintillans during September–October 2019. Dissolved oxygen levels declined below 2 mg l−1 during the bloom causing temporary hypoxia and mortality (up to 71.23%) in the fast growing coral genera Acropora, Montipora and Pocillopora. Due to global climate change, more frequent and larger algal blooms are likely in the future. Hence, it is likely that shallow water coral reefs will be affected more frequently by episodic hypoxic conditions driven by algal blooms. More studies are, however, required to understand the mechanism of coral mortality due to algal blooms, impacts on community composition and the potential for subsequent recovery.

Cloud‐native seascape mapping of Mozambique’s Quirimbas National Park with Sentinel‐2

AbstractThe lack of detailed spatial information on coastal resources, notably shallow water coral reefs and associated benthic habitats, impedes our ability to protect and manage them in the face of global climate change and anthropogenic impacts. Here, we develop a semi‐automated workflow in the cloud that uses freely available Sentinel‐2 data from the European Space Agency (ESA) Copernicus programme to derive information on near‐shore coral reef habitats in the Quirimbas National Park (QNP), a recently declared biosphere reserve in northern Mozambique. We use an end‐to‐end cloud‐based framework within the Google Earth Engine cloud geospatial platform to process imagery from raw pixels to cloud‐free composites which are corrected for glint and surface artefacts, water column and derived estimated depth and then classified into four benthic habitats. Using independent training and validation data, we apply three supervised classification algorithms: random forests (RF), support vector machine (SVM) and classification and regression trees (CART). Our results show that random forests are the most accurate supervised algorithm with over 82% overall accuracy. We mapped over 105 000 ha of shallow water habitat inside the protected area, of which 18% are dominated by coral and hardbottom; 27.5% are seagrass and submerged aquatic vegetation and another 23.4% are soft and sandy substrates, and the remaining area is optically deep water. We employ satellite‐derived bathymetry to assess slope, bathymetric position, rugosity and underwater topography of these habitats. Finally, a spectral unmixing model provides further sub‐pixel–level information of habitats with the potential to monitor changes over time. This effort provides the first, consistent and repeatable and also scalable coastal information system for an east African tropical marine protected area, which hosts shallow‐water ecosystems which are of great significance to local communities and building resilience towards climate change.

Increasing signs of degradation of shallow water coral reefs due to repeated bleaching and spatial competition among benthic substrates

Summer bleaching of corals has been prevalent in the coastal waters of India in recent years before the onset of monsoon. Repeated bleaching of shallow water corals has changed the benthic dynamics of reef ecosystems. In the present study two locations, Wandoor and Burmanullah in South Andaman, were identified where such changes have occurred. After 3 years of study, the shift from coral domination to macroalgae and sponge is evident. In Wandoor, fleshy macroalgae (28.80%) have become a dominated benthic substrate and in Burmanullah, sponges (19.50%) have taken over much of reef space. Observation of multispecies domination of macroalgae in Wandoor and single species domination of sponges in Burmanullah has been established through this study of shallow reefs.

Multi-Temporal UAV Data and Object-Based Image Analysis (OBIA) for Estimation of Substrate Changes in a Post-Bleaching Scenario on a Maldivian Reef

Coral reefs are declining worldwide as a result of the effects of multiple natural and anthropogenic stressors, including regional-scale temperature-induced coral bleaching. Such events have caused significant coral mortality, leading to an evident structural collapse of reefs and shifts in associated benthic communities. In this scenario, reasonable mapping techniques and best practices are critical to improving data collection to describe spatial and temporal patterns of coral reefs after a significant bleaching impact. Our study employed the potential of a consumer-grade drone, coupled with structure from motion and object-based image analysis to investigate for the first time a tool to monitor changes in substrate composition and the associated deterioration in reef environments in a Maldivian shallow-water coral reef. Three key substrate types (hard coral, coral rubble and sand) were detected with high accuracy on high-resolution orthomosaics collected from four sub-areas. Multi-temporal acquisition of UAV data allowed us to compare the classified maps over time (February 2017, November 2018) and obtain evidence of the relevant deterioration in structural complexity of flat reef environments that occurred after the 2016 mass bleaching event. We believe that our proposed methodology offers a cost-effective procedure that is well suited to generate maps for the long-term monitoring of changes in substrate type and reef complexity in shallow water.

Successful application of a novel technique to quantify negative impacts of derelict fishing nets on Northwestern Hawaiian Island reefs

The remote and uninhabited Northwestern Hawaiian Islands (NWHI) contain 70% of the shallow water coral reefs in the United States and are regularly exposed to derelict fishing nets. These nets snag on the shallow reefs, damaging or killing benthic communities. However, no data exist to quantify this impact. Here we use a novel application of photogrammetry, Structure-from-Motion (SfM), to calculate benthic cover from mosaic images at net-impact and control sites. Net-impact sites had significantly higher cover of bare substrate, sand, and crustose coralline algae and significantly lower coral and macroalgae cover compared to control sites. These differences were unrelated to net size and fouling. Our study demonstrates the utility of using SfM to efficiently quantify impacts of derelict fishing nets. Revisiting these sites will be essential to document how the reef recovers to further our understanding of the lasting impacts of derelict fishing nets on coral reef habitats.

De novo assembly and functional annotation of the heart + hemolymph transcriptome in the Caribbean spiny lobster Panulirus argus

The spiny lobster, Panulirus argus, is an ecologically relevant species in shallow water coral reefs and a target of the most lucrative fishery in the greater Caribbean region. This study reports, for the first time, the heart + hemolymph transcriptome of the Caribbean spiny lobster Panulirus argus assembled from short Illumina 150bp PE raw reads. A total of 80,152,094 raw reads were assembled using the Oyster River Protocol pipeline. The assembly resulted in a total of 254,773 transcripts. Functional gene annotation was conducted using the software package 'dammit'. Lastly, gene enrichment analyses were conducted using the Gene Ontology (GO) and KEGG pathway (Kaas) databases. This resource will be of utmost importance in future research aiming at exploring the effect of local and regional anthropogenic disturbances, as well as global climate change on the molecular physiology of this overexploited species.

Zoantharia (Cnidaria: Hexacorallia) of the Dutch Caribbean and One New Species of Parazoanthus

Species of the anthozoan order Zoantharia (=Zoanthidea) are common components of subtropical and tropical shallow water coral reefs. Despite a long history of research on their species diversity in the Caribbean, many regions within this sea remain underexamined. One such region is the Dutch Caribbean, including the islands of St. Eustatius, St. Maarten, Saba, Aruba, Bonaire, and Curaçao, as well as the Saba Bank, for which no definitive species list exists. Here, combining examinations of specimens housed in the Naturalis Biodiversity Center collection with new specimens and records from field expeditions, we provide a list of zoantharian species found within the Dutch Caribbean. Our results demonstrate the presence at least 16 described species, including the newly described Parazoanthus atlanticus, and the additional potential presence of up to four undescribed species. These records of new and undescribed species demonstrate that although the zoantharian research history of the Caribbean is long, further discoveries remain to be found. In light of biodiversity loss and increasing anthropogenic pressure on declining coral reefs, documenting the diversity of zoantharians and other coral reef species to provide baseline data takes on a new urgency.

Where Marine Protected Areas would best represent 30% of ocean biodiversity

The IUCN (the International Union for Conservation of Nature) World Conservation Congress called for the full protection of 30% of each marine habitat globally and at least 30% of all the ocean. Thus, we quantitatively prioritized the top 30% areas for Marine Protected Areas (MPAs) globally using global scale measures of biodiversity from the species to ecosystem level. The analysis used (a) Ecosystems mapped based on 20 environmental variables, (b) four Biomes (seagrass, kelp, mangrove, and shallow water coral reefs) plus seabed rugosity as a proxy for habitat, and (c) species richness within each biogeographic Realm (indicating areas of species endemicity), so as to maximise representivity of biodiversity overall.We found that the 30% prioritized areas were mainly on continental coasts, island arcs, oceanic islands, the southwest Indian Ridge, the northern Mid-Atlantic Ridge, the Coral Triangle, Caribbean Sea, and Arctic Archipelago. They generally covered 30% of the Ecosystems and over 80% of the Biomes. Although 58% of the areas were within countries Exclusive Economic Zones (EEZ), only 10% were in MPAs, and <1% in no-take MPAs (IUCN category Ia). These prioritized areas indicate where it would be optimal to locate MPAs for recovery of marine biodiversity within and outside country's EEZ. Our results thus provide a map that will aid both national and international planning of where to protect marine biodiversity as a whole.