Shallow Ecosystems Research Articles

Multi-method approach identifies a South African estuary as an important elasmobranch habitat and potential nursery ground

Elasmobranchs play important ecological roles but are highly threatened. Understanding their habitat use and abundance is crucial for the management and conservation of these species and their habitats. While some species are known to use estuaries as vital habitats (e.g. feeding or nursery grounds), this remains an understudied area. A multi-method approach was used to survey the Keurbooms Estuary on the south coast of South Africa, over two years, to quantify the diversity, relative abundance and habitat use of elasmobranchs in this system. The survey methods were baited remote underwater video (BRUV), boat-based visual sightings, and unmanned aerial video (UAV). Opportunistic sightings were also collected. Six elasmobranch species were observed, with significant differences in community composition between the methods. Whereas effort was skewed towards BRUV surveys, the boat and UAV surveys recorded more elasmobranchs more frequently, and opportunistic sightings recorded the highest diversity. The common eagle ray Myliobatis aquila was the most abundant elasmobranch species and the only one recorded year-round; most individuals (93%) were juveniles, suggesting the Keurbooms Estuary may be a nursery area for this Critically Endangered species. The duckbill ray Aetomylaeus bovinus and common smoothhound shark Mustelus mustelus were observed during summer, the latter forming large aggregations. Another three ray species were recorded rarely. This study highlights the benefit of using a multi-method survey approach for shallow ecosystems and reveals the Keurbooms Estuary as an important habitat for elasmobranchs.

Properties influencing flux and diatom uptake of mercury and methylmercury from estuarine sediments

Mercury (Hg) is a conspicuous and persistent global pollutant. Ionic Hg can be methylated into noxious methylmercury (CH3Hg), which biomagnifies in marine tropic webs and poses a health risk to humans and organisms. Sediment Hg methylation rates are variable, and the output flux of created CH3Hg are dependent on sediment characteristics and environmental factors. Thus, uncertainties remain about the formation and flux of CH3Hg from sediment, and how this could contribute to the bioaccumulative burden for coastal organisms in shallow ecosystems. Cores were collected from 3 estuarine locations along the Eastern USA to examine how sediments characteristics influence the introduction of Hg and CH3Hg into the base of the food chain. Stable isotopes of inorganic 200Hg and CH3199Hg were injected into sediments of individual cores, with cultured diatoms constrained to overlying waters. Five different treatments were done on duplicate cores, spiked with: (1) no Hg isotopes (control); (2) inorganic 200Hg; (3) CH3199Hg; (4) both 200Hg and CH3199Hg isotopes, (5) both 200Hg and CH3199Hg into overlying waters (not sediment). Experimental cores were incubated for 3 days under temperature and light controlled conditions. These results demonstrate that upper sediments characteristics lead to high variability in Hg cycling. Notably, sediments which contained abundant and peaty organic material (∼28 %LOI), had the highest pore water DOC (3206 μM) and displayed bands of sulfur reducing bacteria yielded the greatest methylation rate (1.97 % day−1) and subsequent diatom uptake of CH3200Hg (cell quota 0.18 amol/cell) in the overlying water.

Diversities and interactions of phages and bacteria in deep-sea sediments as revealed by metagenomics.

Phages are found virtually everywhere, even in extreme environments, and are extremely diverse both in their virion structures and in their genomic content. They are thought to shape the taxonomic and functional composition of microbial communities as well as their stability. A number of studies on laboratory culture and viral metagenomic research provide deeper insights into the abundance, diversity, distribution, and interaction with hosts of phages across a wide range of ecosystems. Although most of these studies focus on easily accessible samples, such as soils, lakes, and shallow oceans, little is known about bathypelagic phages. In this study, through analyzing the 16S rRNA sequencing and viral metagenomic sequencing data of 25 samples collected from five different bathypelagic ecosystems, we detected a high diversity of bacteria and phages, particularly in the cold seep and hydrothermal vent ecosystems, which have stable chemical energy. The relative abundance of phages in these ecosystems was higher than in other three abyssal ecosystems. The low phage/host ratios obtained from host prediction were different from shallow ecosystems and indicated the prevalence of prophages, suggesting the complexity of phage-bacteria interactions in abyssal ecosystems. In the correlation analysis, we revealed several phages-bacteria interaction networks of potential ecological relevance. Our study contributes to a better understanding of the interactions between bathypelagic bacteria and their phages.

Co-Limitation of Phytoplankton by N and P in a Shallow Coastal Lagoon (Ria Formosa): Implications for Eutrophication Evaluation

AbstractThe Ria Formosa coastal lagoon is a highly productive shallow ecosystem in southern Portugal, subjected to nutrient inputs from anthropogenic and natural sources. Nutrients are major abiotic drivers of phytoplankton in this system, but their effects on phytoplankton assemblages and the occurrence of nutrient limitation are still poorly understood. The main goal of this study was, thus, to evaluate the occurrence, type, and effects of nutrient limitation on phytoplankton community and specific functional groups in the Ria Formosa coastal lagoon. We conducted nutrient enrichment experiments with factorial additions of nitrogen (N) and phosphorus (P) using natural phytoplankton assemblages from distinct locations in the Ria Formosa, throughout a yearly cycle. Phytoplankton composition and abundance were evaluated using inverted and epifluorescence microscopies, and spectrophotometric methods were used for biomass. Limitation was defined as higher phytoplankton growth following enrichment with a particular nutrient in relation to the non-enriched control. The most common type of phytoplankton limitation was simultaneous co-limitation by N and P; diatoms, as r-strategists, were the most frequently limited group. Single N and P limitation, and serial P limitation were also observed, as well as negative responses to nutrient enrichment. Group-specific responses to nutrient enrichment were not reflected in the relative abundance of phytoplankton groups within the whole assemblage, due to the numerical dominance of pico-sized groups (cyanobacteria and eukaryotic picophytoplankton). Ambient nutrient ratios and concentrations did not predict phytoplankton nutrient limitation, given the different nutrient utilisation traits among phytoplankton functional groups. Therefore, nutrient ratios should not be used as indicators of nutrient limitation in eutrophication assessment.

What evidence exists on the performance of nature-based solutions interventions for coastal protection in biogenic, shallow ecosystems? A systematic map protocol

BackgroundAnthropogenic pressures and climate change threaten the capacity of ecosystems to deliver a variety of services, including protecting coastal communities from hazards like flooding and erosion. Human interventions aim to buffer against or overcome these threats by providing physical protection for existing coastal infrastructure and communities, along with added ecological, social, or economic co-benefits. These interventions are a type of nature-based solution (NBS), broadly defined as actions working with nature to address societal challenges while also providing benefits for human well-being, biodiversity, and resilience. Despite the increasing popularity of NBS for coastal protection, sometimes in lieu of traditional hardened shorelines (e.g., oyster reefs instead of bulkheads), gaps remain in our understanding of whether common NBS interventions for coastal protection perform as intended. To help fill these knowledge gaps, we aim to identify, collate, and map the evidence base surrounding the performance of active NBS interventions related to coastal protection across a suite of ecological, physical, social, and economic outcomes in salt marsh, seagrass, kelp, mangrove, shellfish reef, and coral reef systems. The resulting evidence base will highlight the current knowledge on NBS performance and inform future uses of NBS meant for coastal protection.MethodsSearches for primary literature on performance of NBS for coastal protection in shallow, biogenic ecosystems will be conducted using a predefined list of indexing platforms, bibliographic databases, open discovery citation indexes, and organizational databases and websites, as well as an online search engine and novel literature discovery tool. All searches will be conducted in English and will be restricted to literature published from 1980 to present. Resulting literature will be screened against set inclusion criteria (i.e., population, intervention, outcome, study type) at the level of title and abstract followed by full text. Screening will be facilitated by a web-based active learning tool that incorporates user feedback via machine learning to prioritize articles for review. Metadata will be extracted from articles that meet inclusion criteria and summarized in a narrative report detailing the distribution and abundance of evidence surrounding NBS performance, including evidence clusters, evidence gaps, and the precision and sensitivity of the search strategy.

Compositional Changes in Sediment Microbiota Are Associated with Seasonal Variation of the Water Column in High-Altitude Hyperarid Andean Lake Systems.

The lacustrine systems of La Brava and La Punta, located in the Tilopozo sector in the extreme south of Salar de Atacama, are pristine high-altitude Andean lakes found along the central Andes of South America. This shallow ecosystem suffers from permanent evaporation, leading to falling water levels, causing it to recede or disappear during the dry season. This dynamic causes physicochemical changes in lakes, such as low nutrient availability, pH change, and dissolved metals, which can influence the composition of the microbial community. In this study, we used a metataxonomic approach (16S rRNA hypervariable regions V3 to V4) to characterize the sedimentary microbiota of these lakes. To understand how the water column affects and is structured in the microbiota of these lakes, we combined the analysis of the persistence of the water column through satellite images and physicochemical characterization. Our results show a significant difference in abiotic factors and microbiota composition between La Punta and La Brava lakes. In addition, microbiota analysis revealed compositional changes in the ecological disaggregation (main and isolated bodies) and antagonistic changes in the abundance of certain taxa between lakes. These findings are an invaluable resource for understanding the microbiological diversity of high Andean lakes using a multidisciplinary approach that evaluates the microbiota behavior in response to abiotic factors. IMPORTANCE In this study, we analyzed the persistence of the water column through satellite images and physicochemical characterization to investigate the composition and diversity in High Andean Lake Systems in a hyperarid environment. In addition to the persistence of the water column, this approach can be used to analyze changes in the morphology of saline accumulations and persistence of snow or ice; for example, for establishing variable plant cover over time and evaluating the microbiota associated with soils with seasonal changes in plants. This makes it an ideal approach to search for novel extremophilic microorganisms with unique properties. In our case, it was used to study microorganisms capable of resisting desiccation and water restriction for a considerable period and adapting to survive in ecological niches, such as those with high UV irradiation, extreme drought, and high salt concentration.

Black coral forests enhance taxonomic and functional distinctiveness of mesophotic fishes in an oceanic island: implications for biodiversity conservation

The degradation of shallow ecosystems has called for efforts to understand the biodiversity and functioning of Mesophotic Ecosystems. However, most empirical studies have been restricted to tropical regions and have majorly focused on taxonomic entities (i.e., species), neglecting important dimensions of biodiversity that influence community assembly and ecosystem functioning. Here, using a subtropical oceanic island in the eastern Atlantic Ocean (Lanzarote, Canary Islands), we investigated variation in (a) alpha and (b) beta functional (i.e., trait) diversity across a depth gradient (0–70 m), as a function of the presence of black coral forests (BCFs, order Antipatharian) in the mesophotic strata, a vulnerable but often overlooked ‘ecosystem engineer’ in regional biodiversity. Despite occupying a similar volume of the functional space (i.e., functional richness) than shallow (< 30 m) reefs, mesophotic fish assemblages inhabiting BCFs differed in their functional structure when accounting for species abundances, with lower evenness and divergence. Similarly, although mesophotic BCFs shared, on average, 90% of the functional entities with shallow reefs, the identity of common and dominant taxonomic and functional entities shifted. Our results suggest BCFs promoted the specialization of reef fishes, likely linked to convergence towards optimal traits to maximize the use of resources and space. Regional biodiversity planning should thus focus on developing specific management and conservation strategies for preserving the unique biodiversity and functionality of mesophotic BCFs.

Diurnal fluctuations in seawater pCO2 amplify the negative effects of ocean acidification on the biotic performance of the calcifying macroalga Halimeda opuntia

Although the adverse effects of increasing atmospheric CO2-induced ocean acidification (OA) on marine calcifying macroalgae have been widely reported, there are limited studies on how daily fluctuations in pCO2 (pH) within shallow ecosystems influence the growth and physiological performance of these calcifiers. Therefore, a 42-day laboratory mimetic experiment to determine how growth, biological performance and related carbon and nitrogen metabolic products of the calcifying macroalga, Halimeda opuntia are generated in response to fluctuating pCO2 under OA conditions (1200 ppmv) was performed. The results of present study showed that the adverse effects of OA were more determined by the adverse influence of elevated acidity (H+) on growth rates, calcification, photosynthesis and the related biotic performance of H. opuntia compared with the positive effects that higher CO2 provided. Moreover, diurnal fluctuations in pCO2 levels [with higher (nearly 8.10) and lower pH (nearly 7.40) values during day and night times, respectively] have amplified these negative influences on H. opuntia. To mitigate elevated pCO2-related stress, higher contents of free amino acids and proline were highly secreted and likely linked to protecting the integrity of algal cellular structures. The above results contribute to increasing our understanding of the biological consequences of pCO2 (pH) variability on calcifying Halimeda species and their physiological plasticity in response to further oceanic pCO2 changes.

State of Play in Marine Soundscape Assessments

A soundscape is the recording of all sounds present in an area, creating a holistic view of the acoustic profile in an ecosystem. Studying acoustic parameters of marine soundscapes as a whole has been shown to give an indication of the health status of the location, as well as correlate to which species may be present and using the area. With the rapid innovation of technology, especially data storage and declining cost of equipment, marine soundscape research is fast increasing, and these previous limitations have been switched for computing capacity for data analysis. Here, we perform a systematic assessment of literature of marine soundscape studies, from 1978, when the first soundscape study was reported, until 2021. We identified 200 primary research studies that recorded soundscapes and captured their geographical location, depth, habitat, duration of the study, and number of sites in each study. Using this data, we summarize the state of play in marine soundscapes studies, and identify knowledge gaps in the spatial coverage, depth profiles, habitat representation and study duration. Spatially, studies are biased towards the northern hemisphere. They are also more prevalent in more easily accessible ecosystems, in order from most to least studied, in coastal (38%), pelagic (20%), tropical coral reef (17%), rocky reef (7%), polar (5.5%), seagrass meadows, oyster reef and kelp/algal forest (&amp;lt;5% each) areas, with zones of cold-water coral the least studied (0.3%). Continuing the trend of accessibility, studies also tended to focus on shallow ecosystems. Most recordings (68%) were conducted in the upper 50 m, with 13% in 50-200 m depths, and only 0.6% at a depth &amp;gt;4000 m. With anthropogenic noise and other pollution sources increasing globally, these gaps in research should be further addressed, especially as they pertain to vulnerable ecosystems, many of which are affected by global climate change and anthropogenic influences. It is crucial that marine soundscape studies continue to be developed and pursued, to establish baselines for healthy ecosystems and/or document recovery following management actions.

The complete mitochondrial genome of Dendrophyllia minuscula (Cnidaria: Scleractinia) from the NEOM region of the Northern Red Sea

The scleractinian coral family Dendrophylliidae is a major component of shallow and deep-water coral ecosystems worldwide, but our knowledge on the evolutionary history of the family remains scarce. Here, we used ezRAD coupled with Illumina sequencing technology and reconstructed the complete mitochondrial genome of Dendrophyllia minuscula (GenBank accession number OL634845), from mesophotic depths in the Red Sea NEOM area. The mitochondrial genome of D. minuscula consisted of 19,054 bp, organized in 13 protein-coding genes, 2 rRNA genes, and 2 tRNA genes, in agreement with the Scleractinia typical mitogenome organization. This complete mitochondrial genome contributes toward a better knowledge of mesophotic and deep-water coral diversity and evolutionary history.

Change and variability in Antarctic coastal exposure, 1979\u20132020

Increased exposure of Antarctica’s coastal environment to open ocean and waves due to loss of a protective sea-ice “buffer” has important ramifications for ice-shelf stability, coastal erosion, important ice-ocean-atmosphere interactions and shallow benthic ecosystems. Here, we introduce a climate and environmental metric based on the ongoing long-term satellite sea-ice concentration record, namely Coastal Exposure Length. This is a daily measure of change and variability in the length and incidence of Antarctic coastline lacking any protective sea-ice buffer offshore. For 1979–2020, ~50% of Antarctica’s ~17,850-km coastline had no sea ice offshore each summer, with minimal exposure in winter. Regional summer/maximum contributions vary from 45% (Amundsen-Bellingshausen seas) to 58% (Indian Ocean and Ross Sea), with circumpolar annual exposure ranging from 38% (2019) to 63% (1993). The annual maximum length of Antarctic coastal exposure decreased by ~30 km (~0.32%) per year for 1979–2020, composed of distinct regional and seasonal contributions.

Influence of dense macrophyte vegetation and total gas saturation on the performance of acoustic telemetry

BackgroundAcoustic telemetry is widely used as a method for high resolution monitoring of aquatic animal movement to investigate relationships between individual animals and their environment. In shallow freshwater ecosystem, aquatic macrophytes are common and their presence increases habitat complexity and baffles sound propagation. These properties may be likely to affect the performance of acoustic telemetry, however, to date this issue has received little attention, when studying the ecology of movements of fishes in and around the important macrophyte habitats. Here, we conducted a range-test study in a freshwater riverine ecosystem, with mass development of the aquatic macrophyte Juncus bulbosus (L.), to assess how dense macrophytes impact detection probability, detection range, and performance of a three-dimensional receiver positioning system. Supersaturation of gas frequently occurs at the study site as a by-product of upstream hydroelectric power generation and gave a unique opportunity to investigate how total gas saturation affects the performance of acoustic telemetry. We also investigated the influence of environmental conditions (i.e., day-of-year, time of day, average water level above J. bulbosus) on detection probability together with vertical position of transmitters and location inside or outside macrophytes.ResultsThe detection probability and range were generally low for transmitters in and outside J. bulbosus stands, with mean hourly detection probabilities ranging from 1.18 to 5% and detection ranges between 17.26 m ± 0.74. The interaction between total macrophyte biomass and distance to receiver reduced the detection probability and detection range substantially. Detection probability further decreased with increasing total gas saturation, and transmitters positioned near the sediment and close to the surface also had lower detection probabilities compared to receivers in the middle of the water column. Finally, the low detection probability affected position estimates, where only 23% of the detections could be positioned using the average positioning estimation method and positional accuracy and precision were low ranging from 1.48 to 164.8 m and 0 to 50.1 m, respectively.ConclusionsOur findings demonstrate the impact of macrophytes and total gas saturation on detection probability and range of acoustic transmitters in a shallow ecosystem, where tagged fish are unlikely to be detected by receivers or positioned. These results emphasise that in situ range testing is strongly needed before determining the density and design of receiver array when performing acoustic telemetry studies in shallow ecosystems.

Transformation, Fluxes and Impacts of Dissolved Metals from Shallow Water Hydrothermal Vents on Nearby Ecosystem Offshore of Kueishantao (NE Taiwan)

Hydrothermal vents are one of the important sources of major or trace elements in the ocean. The elemental fluxes, however, may be dynamic due to coastal processes and hydrothermal plumes, especially in shallow-water hydrothermal vents. We collected water samples by using the trace-metal clean technique inside and outside two shallow-water hydrothermal vents (white vent: low temperature, high pH; and yellow vent: high temperature, low pH) off Kueishantao Islet, Taiwan, China via SCUBA divers. We analyzed these samples for their hydro-chemical parameters and dissolved elements (Fe, Mn, Mg, V, Cu, and Mo) thereafter. Our results show that dissolved metals’ concentrations were significantly different between the two vents, with higher Mn and Fe in the White Vent than in the Yellow Vent, likely due to the decreased affinity of the dissolved metals for particles in the white vent. We estimated the plume fluxes of dissolved metals from the hydrothermal mouth by multiplying in situ hydrothermal discharge flowrates with metals’ concentrations inside the vents, which were: 1.09~7.02 × 104 kg Mg, 0.10~1.23 kg Fe, 0.08~28 kg Mn, 33.4~306 g V, 2.89~77.7 g Cu, and 54.3~664 g Mo, annually. The results further indicate that such plumes probably have impacted nearby seawater due to coastal currents and particle desorption during transport. Furthermore, the concentrations of biogenic elements could be further modified in seawater, and potentially impact nearby ecosystems on a larger scale. Our study provides information with which to further understand metal redeployment in submarine shallow nearby ecosystems.

Snail communities increase submerged macrophyte growth by grazing epiphytic algae and phytoplankton in a mesocosm experiment.

The relationships between producers (e.g., macrophytes, phytoplankton and epiphytic algae) and snails play an important role in maintaining the function and stability of shallow ecosystems. Complex relationships exist among macrophytes, epiphytic algae, phytoplankton, and snails. We studied the effects of snail communities (consisting of Radix swinhoei, Hippeutis cantori, Bellamya aeruginosa, and Parafossarulus striatulus) on the biomass of phytoplankton and epiphytic algae as well as on the growth of three species of submerged macrophytes (Hydrilla verticillata, Vallisneria natans, and one exotic submerged plant, Elodea nuttallii) in a 90‐day outdoor mesocosm experiment conducted on the shore of subtropical Lake Liangzihu, China. A structural equation model showed that the snail communities affected the submerged macrophytes by grazing phytoplankton and epiphytic algae (reduction in phytoplankton Chl‐a and epiphytic algal abundance), enhancing the biomass of submerged macrophytes. Highly branched macrophytes with high surfaces and morphologies and many microhabitats supported the most snails and epiphytic algae (the biomass of the snail communities and epiphytic algae on H. verticillata was greater than that on V. natans), and snails preferred to feed on native plants. Competition drove the snails to change their grazing preferences to achieve coexistence.

Heterotrophic Bacterioplankton Growth and Physiological Properties in Red Sea Tropical Shallow Ecosystems With Different Dissolved Organic Matter Sources.

Despite the key role of heterotrophic bacterioplankton in the biogeochemistry of tropical coastal waters, their dynamics have been poorly investigated in relation to the different dissolved organic matter (DOM) pools usually available. In this study we conducted four seasonal incubations of unfiltered and predator-free seawater (Community and Filtered treatment, respectively) at three Red Sea coastal sites characterized by different dominant DOM sources: Seagrass, Mangrove, and Phytoplankton. Bacterial abundance, growth and physiological status were assessed by flow cytometry and community composition by 16S rRNA gene amplicons. The Seagrass site showed the highest initial abundances (6.93 ± 0.30 × 105 cells mL–1), coincident with maximum DOC concentrations (>100 μmol C L–1), while growth rates peaked at the Mangrove site (1.11 ± 0.09 d–1) and were consistently higher in the Filtered treatment. The ratio between the Filtered and Community maximum bacterial abundance (a proxy for top-down control by protistan grazers) showed minimum values at the Seagrass site (1.05 ± 0.05) and maximum at the Phytoplankton site (1.24 ± 0.30), suggesting protistan grazing was higher in open waters, especially in the first half of the year. Since the Mangrove and Seagrass sites shared a similar bacterial diversity, the unexpected lack of bacterial response to predators removal at the latter site should be explained by differences in DOM characteristics. Nitrogen-rich DOM and fluorescent protein-like components were significantly associated with enhanced specific growth rates along the inshore-offshore gradient. Our study confirms the hypotheses that top–down factors control bacterial standing stocks while specific growth rates are bottom-up controlled in representative Red Sea shallow, oligotrophic ecosystems.

The relative contribution of fleshy epiphytic macroalgae to the production of temperate maerl (rhodolith) beds

Maerl beds are composed of unattached red calcareous coralline algae. When located in shallow ecosystems, these calcareous macroalgae provide substrates for the development of fleshy epiphytic macroalgae, which contribute to the productivity of the maerl beds. To assess the importance of their contribution, we estimated the primary production of the main taxa of fleshy epiphytic macroalgae (Solieria chordalis or Rhodomelaceae), growing in 2 distinct Lithothamnion corallioides maerl beds in the Bay of Brest (Brittany, France), characterized by different depths and incident irradiances. We estimated epiphytic algal photosynthetic parameters derived from photosynthesis-irradiance curves calculated from incubations in photo-respirometry chambers at different irradiances and in the dark. A comparison with results previously obtained in L. corallioides showed that in the 2 studied maerl beds there were no differences between maerl and its fleshy epiphytic macroalgae in terms of photo-acclimation to low irradiances. However, fleshy epiphytic macroalgae had higher photosynthetic efficiencies and photosynthetic rates per unit of biomass or chlorophyll a than the maerl species. Estimations of net primary production per surface area of maerl bed indicated that fleshy epiphytic macroalgae account for 25% of maerl bed productivity. Interactions between L. corallioides and its fleshy epiphytic macroalgae may affect their respective contributions. In the deepest maerl beds, shading by fleshy epiphytic macroalgae may have a detrimental impact on L. corallioides net primary production, whereas in the shallowest maerl beds, fleshy epiphytic macroalgae may protect maerl from photoinhibition under high irradiances.

Hyperthermal events recorded in the Palaeogene carbonate sequence of southern Gulf of Mexico—Santa Elena borehole, Yucatan Peninsula

Based on geochemical and magnetic susceptibility analyses, maximum warming events (hyperthermal) in the Palaeogene are recognized in the carbonate rocks of the Santa Elena borehole (SEB) in the Yucatan Peninsula, the Palaeocene‐Eocene Thermal Maximum (PETM) and the Eocene Thermal Maximum 2 (ETM‐2). The site records the continental shelf marine response during these global events. Major and trace element records (Al, Ba, Ca, Fe, K, Si, and Ti), Ca/Fe, Si/Al ratios, and magnetic susceptibility are used as proxies of terrigenous input, and Ba/Al ratio as a proxy of palaeoproductivity. The hyperthermal events are characterized by the dilution and/or dissolution of biogenic carbonates. The high input of terrigenous materials is linked to extreme precipitation, common during these warming events. Our records suggest a decrease in palaeoproductivity associated with a nutrients gradient in a shallow ecosystem, with deeper thermocline and stratified column water. The PETM is characterized by high eustatic sea‐level conditions, with a high contribution of detrital material, indicating sedimentary condensation and marked increase in precipitation, calcite dilution and/or dissolution, and low productivity. The ETM‐2 event is less extreme than the PETM, with high precipitation, although evaporation could also play an important role, as evidenced by the presence of evaporites in this interval. These changes might affect the higher trophic levels of the shelf sea ecosystem, declining productivity. The study contributes to our understanding of the global and regional effects of these past warming events and the future climate change.

The Belgica 121 expedition to the Western Antarctic Peninsula: a detailed biodiversity census.

BackgroundThis dataset relates to the biodiversity census carried out during the Belgica 121 (B121) expedition to the Western Antarctic Peninsula from February to March 2019. One of the aims of the campaign was to explore the surroundings of the Gerlache Strait and to carry out a detailed biodiversity census focusing on inter- and subtidal shallow-water areas using both classic descriptive marine ecology methods, as well as state-of-the art techniques (habitat mapping, genetics, trophic ecology). The biodiversity census was carried out onboard a nimble research vessel, RV Australis. This dataset will offer access to the raw data on biodiversity occurrences, obtained using a range of methods described in this data paper.New informationNew raw biodiversity data for a poorly-sampled region (Western Antarctic Peninsula) with a special focus on shallow ecosystems.

Effects of Recreational Boating on Microbial and Meiofauna Diversity in Coastal Shallow Ecosystems of the Baltic Sea

ABSTRACTRecreational boating can impact benthic ecosystems in coastal waters. Reduced height and cover of aquatic vegetation in shallow Baltic Sea inlets with high boat traffic have raised concerns about cascading effects on benthic communities in these ecosystems. Here, we characterized the diversity and composition of sediment-associated microbial and meiofaunal communities across five bays subjected to low and high degrees of boating activity and examined the community-environment relationships and association with bay morphometry. We found that recreational boating activity altered meiofauna alpha diversity and the composition of both micro- and meiobenthic communities, and there were strong correlations between community structure and morphometric variables like topographic openness, wave exposure, water surface area, and total phosphorous concentrations. Inlets with high boat traffic showed an increase of bacterial taxa like Hydrogenophilaceae and Burkholderiaceae. Several meiofauna taxa previously reported to respond positively to high levels of suspended organic matter were found in higher relative abundances in the bays with high boat traffic. Overall, our results show that morphometric characteristics of inlets are the strongest drivers of benthic diversity in shallow coastal environments. However, while the effects were small, we found significant effects of recreational boating on benthic community structure that should be considered when evaluating the new mooring projects.IMPORTANCE With the increase of recreational boating activity and development of boating infrastructure in shallow, wave-protected areas, there is growing concern for their impact on coastal ecosystems. In order to properly assess the effects and consider the potential for recovery, it is important to investigate microbial and meiofaunal communities that underpin the functioning of these ecosystems. Here, we present the first study that uses DNA metabarcoding to assess how benthic biodiversity in shallow coastal areas is impacted by recreational boating. Our study shows a relatively small, but significant, effect of recreational boating both on meiofauna alpha diversity and meiofauna and bacterial community composition. However, both meiofauna and bacterial community composition in shallow benthic habitats is mediated to a higher degree by abiotic variables, such as topographic openness, area or size of the inlets, and wave exposure. Despite the fact that the effects were small, such impacts on benthic biodiversity should be considered in the management of coastal shallow habitats.

Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome.

The transfer of methyl-Hg (MeHg) from food is central for its effects in aquatic animals, but we still lack knowledge concerning its impact on invertebrate primary consumers. In aquatic environments, cell walls of plants are particularly recalcitrant to degradation and as such remain available as a food source for long periods. Here, the impact at the proteomic level of dietary MeHg in Gammarus fossarum was established and linked to subcellular distribution of Hg. Individuals of G. fossarum were fed with MeHg in cell wall or intracellular compartments of Elodea nuttallii. Hg concentrations in subcellular fractions were 2 to 6 times higher in animals fed with cell wall than intracellular compartments. At the higher concentrations tested, the proportion of Hg in metal-sensitive fraction increased from 30.0 ± 6.1 to 41.0 ± 5.7% for individuals fed with intracellular compartment, while biologically detoxified metal fraction increased from 30.0 ± 6.1 to 50.0 ± 2.8% when fed with cell wall compartment. Data suggested that several thresholds of proteomic response are triggered by increased bioaccumulation in each subcellular fraction in correlation with Hg exclusively bound to the metal-sensitive fraction, while the increase of biologically detoxified metal likely had a cost for fitness. Proteomics analysis supported that the different binding sites and speciation in shoots subsequently resulted in different fate and cellular toxicity pathways to consumers. Our data confirmed that Hg bound in cell walls of plants can be assimilated by G. fossarum, which is consistent with its feeding strategy, hence pointing cell walls as a significant source for Hg transfers and toxicity in primary consumers. The high accumulation of Hg in macrophytes makes them a risk for food web transfer in shallow ecosystems. The present results allowed gaining new insights into the effects and uptake mechanisms of MeHg in aquatic primary consumers.