In general, the evaluation of a site amplification effect is very important in earthquake engineering when a seismic damage to wooden house with a low seismic performance against a strong earthquake will be predicted by an accurate estimation of the seismic intensity at surface ground. In this paper, both horizontal and vertical microtremors at 51 measuring sites in the west district in Maizuru city were measured by servo type accelerometers, and also the predominant periods at 727 sites in the same area were numerically estimated from the predominant periods measured at 51 sites using the Inverse Distance Weighting method. Moreover, a seismic damage prediction of wooden house against a strong earthquake ground motion was conducted by a relationship between a seismic damage function and a maximum drift angle of wooden house.