Background:Epigenetic drugs are used for the treatment of several hematologic malignancies, but their pharmacological mechanism remains poorly understood. By genome wide analysis of transcription start sites (TSS), methylation status and chromatin dynamics, we showed for DNA methyltransferase and histone deacetylase inhibitors (DNMTi and HDACi) global reactivation of long terminal repeat elements (LTRs) in vitro (cell line models) and in vivo (neuroblastoma mouse xenograft model). The LTR reactivation is resulting in numerous fusion transcripts that encode novel protein isoforms which have the potential to influence cell proliferation, seem to be an explanation for the priming effect of epigenetic therapy and might be used as a potential marker for epigenetic treatment response.Aims:To investigate the reactivation of LTRs in sequential peripheral blood samples of AML and MDS patients upon epigenetic drug treatment with 5‐Azacytidine (DNMT‐inhibitor) by qRT‐PCR and ddPCR and to correlate the expression results with treatment response.Methods:Sequential RNA samples from peripheral blood mononuclear cells (PBMCs) of three AML and four MDS patients treated with 5‐Azacytidine were analyzed. Consensus primers covering the transcript variants of LTR12C as well as particular primers for specific LTR elements were used. Expression of LTRs was analyzed by qRT‐PCR technique with SYBRGreen as well as ddPCR technique with EvaGreen. Expression results were associated with treatment response.Results:In AML and MDS patients, we could detect LTR expression in sequential samples from PBMCs over time with 5‐Azacytidine treatment. LTR12C expression values measured by qRT‐PCR were confirmed by ddPCR and allowed to assess specific LTR elements. Patients with response to 5‐Azacytidine showed increased LTR12C expression whereas patients without treatment response had no increase in LTR12C expression. In contrast to the results from our previous NSCLC cell line model, specific LTR elements were only partially expressed in sequential PBMC samples from AML patients treated with 5‐Azacytidine.Summary/Conclusion:In this first in‐vivo pilot study, we detected LTR expression in sequential PBMC samples of AML and MDS patients treated with 5‐Azacytidine. In this group of patients, treatment response correlated with LTR expression over several treatment cycles with 5‐Azacytidine. These are the first results in AML and MDS patients showing expression of LTRs upon epigenetic drug treatment. Larger patient cohorts are necessary to confirm these results by either PCR‐ or genome wide‐analysis of transcription start sites (TSS) (Cap analysis of gene expression (CAGE) sequencing) as well as to evaluate the association of LTR expression and treatment response.
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