Alkylthiol Self-assembled Monolayers Research Articles

One-Pot Electrografting of Mixed Monolayers with Controlled Composition

Surface functionalization with ultrathin layers exhibiting a highly robust interface is of paramount importance for designing materials with tailored properties or operating functions, without modifying drastically the material’s bulk structures. A fine-tuning of the surface composition obtained, for instance from binary mixed layers, is also a key issue for developing high value-added applications like efficient sensors. Herein, binary mixtures of calix[4]arene-tetra-diazonium salts generated in situ from their corresponding calix[4]tetra-anilines are electrografted to form covalently bound monolayers onto substrates for yielding versatile functionalizable molecular platforms. Wettability studies, X-ray photoelectron spectroscopy analyses, and scanning electrochemical microscopy show the formation of homogeneous mixed monolayers. The distribution of the two calixarenes on the surface is directed by their relative molar fraction in the deposition solution. The strategy allows the control of the composition of mixed monolayers in a one-step approach. Postfunctionalization of the mixed layers with ferrocene centers is performed to exemplify the benefit of a dilution procedure when functional groups are introduced at the calix[4]arene small rim. This study highlights the potential of diazonium salt electrografting as a competitive alternative to chemisorption strategies such as self-assembled monolayers of alkyl thiols in the field of surface functionalization.

Chain-Length and Temperature Dependence of Self-Assembled Monolayers of Alkylthiolates on Au(111) and Ag(111) Surfaces

We present a molecular dynamics (MD) study on the structure of self-assembled monolayers (SAMs) of alkylthiolates on various metal surfaces, with especial attention to Au(111) and Ag(111). Variations in the structure of these SAMs as a function of temperature and alkyl-chain length are systematically investigated. The MD simulations are performed by using a recently developed force field based on second-order Møller-Plesset perturbation theory calculations. Good agreement between the present results and the existing experimental data is found on Au(111). On Ag(111) the comparison between theory and experiment is also satisfactory for alkylthiolates with no more than 14 carbon atoms. The dependences of the average tilt angle of SAMs on temperature and chain length are easily understood by means of a simple single-chain model.

Increase in Activity and Selectivity in Catalysis via Surface Modification with Self-Assembled Monolayers

Selectivity has become a critical consideration in the design of catalysts, but increases in selectivity are typically achieved at the expense of overall activity. Here we report on a unique case where the addition of alkyl thiol self-assembled monolayers to colloidal platinum nanoparticles leads to significant improvements in both activity and selectivity during the hydrogenation of α-keto esters with cinchonidine as a chiral modifier. These catalytic improvements may be explained by a kinetic effect in which the cinchonidine residence time on the surface is increased by the thiol self-assembled layers. More nuanced compromises between activity and selectivity are involved when using supported catalysts, but reasonable performances are still possible with Pt/Al2O3 catalysts treated with cinchonidine-derivatized thiols. Indeed, these all-heterogeneous catalysts can promote the α-keto ester hydrogenation reaction with almost the same enantioselectivity as the best naked supported Pt catalyst without the need to add cinchonidine to the reaction mixture. They are among the most enantioselective all-heterogeneous catalysts reported to date.

Photocatalytic Nanolithography of Self-Assembled Monolayers and Proteins

Self-assembled monolayers of alkylthiolates on gold and alkylsilanes on silicon dioxide have been patterned photocatalytically on sub-100 nm length-scales using both apertured near-field and apertureless methods. Apertured lithography was carried out by means of an argon ion laser (364 nm) coupled to cantilever-type near-field probes with a thin film of titania deposited over the aperture. Apertureless lithography was carried out with a helium–cadmium laser (325 nm) to excite titanium-coated, contact-mode atomic force microscope (AFM) probes. This latter approach is readily implementable on any commercial AFM system. Photodegradation occurred in both cases through the localized photocatalytic degradation of the monolayer. For alkanethiols, degradation of one thiol exposed the bare substrate, enabling refunctionalization of the bare gold by a second, contrasting thiol. For alkylsilanes, degradation of the adsorbate molecule provided a facile means for protein patterning. Lines were written in a protein-resistant film formed by the adsorption of oligo(ethylene glycol)-functionalized trichlorosilanes on glass, leading to the formation of sub-100 nm adhesive, aldehyde-functionalized regions. These were derivatized with aminobutylnitrilotriacetic acid, and complexed with Ni2+, enabling the binding of histidine-labeled green fluorescent protein, which yielded bright fluorescence from 70-nm-wide lines that could be imaged clearly in a confocal microscope.

Electrocatalytic O2 Reduction Reaction by Synthetic Analogues of Cytochrome P450 and Myoglobin: In-Situ Resonance Raman and Dynamic Electrochemistry Investigations

Bioinspired electrodes have been constructed by physiabsorption of two air stable iron porphyrin complexes, one bearing an imidazole coordination and the other bearing a thiolate coordination. To control the electron transfer (ET) rate to these O2 reducing electrocatalysts, the complexes were immobilized on edge plane graphite electrode and alkyl thiol self-assembled monolayer (SAM) modified Au electrodes with varying chain lengths of the thiols. Catalyst immobilized SAM modified surfaces were characterized using surface enhanced resonance Raman spectroscopy (SERRS), and their electrocatalytic O2 reduction properties were investigated using rotating ring disc electrochemistry (RRDE). While the imidazole bound complex showed increase in partially reduced oxygen species (PROS) on decreasing ET rate, the thiolate bound complex showed the opposite trend, that is, the value of PROS reduced on decreasing the ET rate. SERRS coupled to rotating disc electrochemistry (SERRS-RDE) technique helps gain insight into the O2 reduction mechanism. The results obtained indicate that while the imidazole bound iron porphyrin complex reduces O2 through an inner sphere mechanism using a high-spin (HS) Fe(II) species, the thiolate ligated complex shows an inner sphere as well as outer sphere mechanism using a HS Fe(II) and low-spin (LS) Fe(II) species, respectively. The PROS formation by a HS Fe(II) species of this thiolate bound complex increases with decreasing ET rates while that of a LS Fe(II) species decreases with decreasing ET rates.

Surface Deposition Resulting from Collisions between Diglycine and Chemically Modified Alkylthiolate Self-Assembled Monolayer Surfaces

We report results from quantum mechanics/molecular mechanics (QM/MM) direct dynamics simulations of hyper-thermal collisions between N-protonated diglycine (gly2-H+) and a chemically modified (−COCl headgroup placed on the center chain) octanethiolate self-assembled monolayer (SAM) surfaces. Both fragmentation and reactivity are observed with the probability of each increasing with collision energy. Fragmentation occurs with a probability of 0.98 (out of 1) for a collision energy of 100 eV. Surface deposition, a subgroup of reactivity, is examined and compared to the experimental work of Laskin and co-workers (Phys. Chem. Chem. Phys.2008, 10, 1079–90). We find that intact surface deposition is a rare event, peaking in probability at a collision energy of approximately 30–40 eV, which is in excellent agreement with experiment.

Probing the Orientation of β-Lactoglobulin on Gold Surfaces Modified by Alkyl Thiol Self-Assembled Monolayers

The adsorption of a globular protein on chemically well controlled surfaces was investigated in order to correlate its orientation to the surface properties. To this end, three different alkyl thiols, differing by their end group (-COOH, -CH3, and -NH2), were used to build up self-assembled monolayers (SAMs) on gold substrates. β-Lactoglobulin (βLG) was then adsorbed on these SAMs by immersion in a phosphate buffer solution. The surface modification with alkyl thiols and the subsequent adsorption of proteins were characterized ex situ by polarization modulated infrared reflection-absorption spectroscopy (PM-IRRAS) and X-ray photoelectron spectroscopy (XPS). The adsorption behavior of proteins was also monitored in situ using quartz crystal microbalance with dissipation measurements (QCM-D). Direct evidence regarding the protein orientation in the adsorbed state was obtained by means of time-of-flight secondary ion mass spectrometry (ToF-SIMS). Principal component analysis (PCA), performed on the ToF-SIMS results, enables to separate the samples and shows that the proteins display different distributions of amino acids at the surface depending on the conditioning thiol layer. Our results revealed that the adsorption mode of the protein is influenced by the thiol end groups, and specific orientations of the protein on the surface are proposed for the different substrates. © 2013 American Chemical Society.

What Happens to the Thiolates Created by Reductively Desorbing SAMs? An in Situ Study Using Fluorescence Microscopy and Electrochemistry

In situ examination of the reductive desorption process for Au microelectrodes modified with a thiol self-assembled monolayer (SAM) using fluorescence microscopy enabled the study of the fate of the desorbed thiolate species. The Bodipy labeled alkyl-thiol SAM, when adsorbed, is not fluorescent due to quenching by the Au surface. Once reductively desorbed, the thiolate molecules fluoresce and their direction and speed are monitored. At moderately negative reduction potentials, the thiolate species hemispherically diffuse away from the microelectrode. Also observed is the influence of a closely positioned counter electrode on the direction of the desorbed thiolate movement. As the potential becomes more negative, the molecules move in an upward direction, with a speed that depends on the amount of dissolved H(2) produced by water reduction. Shown is that this motion is controlled, in large part, by the change in the electrolyte density near the electrode due to dissolved H(2). These results should help in explaining the extent of readsorption at oxidative potentials observed in cyclic voltammetry (CV) reductive desorption measurements, as well as improving the general understanding of the SAM removal process by reductive desorption. The electrogenerated H(2) was also shown to be able to reductively remove the thiol SAM from the Pt/Ir particles that decorate the microelectrode glass sheath.

Water Adsorption Isotherms on CH3-, OH-, and COOH-Terminated Organic Surfaces at Ambient Conditions Measured with PM-RAIRS

The water adsorption isotherms on methyl (CH(3))-, hydroxyl (OH)-, and carboxylic acid (COOH)-terminated alkylthiol self-assembled monolayers (SAMs) on Au were studied at room temperature and ambient pressure with polarization modulation reflection-absorption infrared spectroscopy (PM-RAIRS). PM-RAIRS analysis showed that water does not adsorb at all on the CH(3)-SAM/Au at subsaturation humidity conditions. In a dry Ar environment, the OH-SAM/Au holds at least 2 layer thick strongly bound water molecules which exhibit a broad O-H stretch vibration peak centered at ∼3360 cm(-1). The peak position implies that the strongly bound water layer on the OH SAM is more like a liquid than an ice. The additional uptake of water in humid environments is relatively weak, and the peak position changes very little. Unlike the OH-SAM/Au, the COOH-SAM/Au does not have strongly bound water layer. This seems to be due to the strong hydrogen bonding between terminal COOH groups in dry conditions. The weak interactions between water and carboxyl groups at low relative humidity (RH) and the solvation of dissociated carboxylic groups in high RH lead to a type III isotherm behavior, based on the BET categories, for water adsorption on the COOH-SAM/Au. The water spectra on the COOH-SAM at RH > 45% are centered at ∼3430 cm(-1) and very broad, indicating that the hydrogen-bonding network of water on the COOH-SAM is much different from that on the OH-SAM.

Commensurate Solid–Solid Phase Transitions in Self-Assembled Monolayers of Alkylthiolates Lying on Metal Surfaces

A temperature-induced commensurate solid-solid phase transition in self-assembled monolayers (SAMs) of alkylthiolates lying on Pt(111) is predicted from molecular dynamics simulations based on ab initio potential energy surfaces. As the system cools down from room temperature to low enough temperature, SAMs of alkylthiolates with more than ~12 carbon atoms undergo an abrupt change of orientation from a nearly upright to a tilted configuration. As the initial hexagonal arrangement of the sulfur headgroups is kept fixed during the simulations, the phase transition is entirely governed by chain-chain interactions. Similar commensurate phase transitions are predicted for hexagonally arranged SAMs with lattice spacings of the order of 4.7-4.9 Å, which, among others, excludes the well-known cases of densely packed SAMs of alkylthiolates on Au(111) and Ag(111). These findings could be relevant for the design of novel electronic or optical devices controllable by temperature.

Study of Alkylthiolate Self-assembled Monolayers on Au(111) Using a Semilocal meta-GGA Density Functional

We present a density functional theory study of the structure and stability of self-assembled monolayers (SAMs) of alkylthiolate on Au(111) as a function of the alkyl chain length. The most favorable structure of the SAMs involves an RS–Au–SR complex (S being sulfur, R being an alkyl chain) formed through sandwiching one Au adatom by two alkylthiolates (RSs). Comparing a generalized gradient (GGA-PBE) and a meta-GGA (MGGA-M06-L) exchange-correlation functional we find that only the meta-GGA functional predicts the experimentally observed attractive intermolecular interactions within the SAMs. In particular, the use of M06-L yields an increased stability of the SAMs with increasing alkyl chain length and an increased attractive interaction between RS–Au–SR complexes at shorter distances.

On the kinetics and thermodynamics of S–X (X = H, CH3, SCH3, COCH3, and CN) cleavage in the formation of self-assembled monolayers of alkylthiols on Au(111)

Abounding potential technological applications is one of the many reasons why adsorption of aliphatic thiols on gold surface is a subject of intense research by many research groups. Understanding and exploring the nature of adsorbed species, the site of adsorption and the nature of interaction between adsorbed species and the gold surface using experimental and theoretical investigations is an active area of pursuit. However, despite a large number of investigations to understand the atomistic structures of thiols on Au(111), some of the basic issues are still unaddressed. For instance, there is still no clear information about the mechanism of adsorption of alkylthiol on gold surface. Furthermore, the reactivity and mechanism of adsorption of alkylthiol is likely to differ when gold adatoms and/or vacancies in the gold layers are considered. In this work, we have tackled these issues by computing the stationary states involved in the thiols adsorption in order to shed light on the kinetics aspects of adsorption process. In this respect, we have considered a variety of thiols into consideration such as methylthiol, dimethylsulfide, dimethyldisulfide, thioacetates, and thiocyanates. We have also considered the cleavage mechanism in the clean and the reconstructed surface scenario and the structure, energetics and spin densities have been computed using electronic structure calculations. For all the studied cases, an homolytic cleavage of CH3S–X (X = H, CH3, SCH3, CN, and COCH3) bond has been found to occur upon adsorption on the gold surface.

Detection of 2,4-Dinitrotoluene (DNT) as a Model System for Nitroaromatic Compounds via Molecularly Imprinted Short-Alkyl-Chain SAMs

A 2-D molecularly imprinted monolayer (2-D MIM) approach was used to prepare a simple and robust sensor for nitroaromatic compounds with 2,4-dinitrotoluene (DNT) as the model compound, which is a precursor and analog for explosive 2,4,6-trinitrotoluene (TNT). In contrast to studies utilizing long-chain hexadecylmercaptan self-assembled monolayers (SAM)s for sensing, a shorter-chain alkylthiol (i.e., butanethiol SAM) was utilized for DNT detection. The role of the chain length of the coadsorbed alkylthiol was emphasized with a matched template during solution adsorption. Semiempirical PM3 quantum calculations were used to determine the molecular conformation and complexation of the adsorbates. A switching mechanism was invoked on the basis of the ability of the template analyte to alter the packing arrangement of the alkylthiol SAMs near defect sites as influenced by the DNT-ethanol solvent complex. A 2-D MIM was formed on the Au surface electrode of a quartz crystal microbalance (QCM), which was then used to sense various concentrations of the analyte. Interestingly, the 2-D MIM QCM also enabled the selective detection of DNT even in a mixed solution of competing molecules, demonstrating the selectivity figure of merit. Likewise, electrochemical impedance spectroscopy (EIS) data at different concentrations of DNT confirmed the 2-D MIM effectiveness for sensing based on the interfacial conformation and electron-transport properties of the imprinted butanethiol SAM.

Multicomponent Alkylthiol Self-Assembled Monolayers Formed by Electrochemical Co-Adsorption

not Available.

Theoretical study of the structure of self-assembled monolayers of short alkylthiolates on Au(111) and Ag(111): the role of induced substrate reconstruction and chain–chain interactions

We compare the stability of various structures of high coverage self-assembled monolayers (SAMs) of short alkylthiolates, S(CH(2))(n-1)CH(3) (= C(n)), on Ag(111) and Au(111). We employ: (i) the ab initio thermodynamics approach based on density functional theory (DFT) calculations, to compare the stability of SAMs of C(1) (with coverages Θ = 3/7 and 1/3) on both substrates, and (ii) a set of pairwise interatomic potentials derived from second-order Møller-Plesset (MP2) perturbation theory calculations, to estimate the role of chain-chain (Ch-Ch) interactions in the structure and stability of SAMs of longer chain alkylthiolates. For C(1)/Ag(111) (C(1)/Au(111)) the SAM with Θ = 3/7 is more (less) stable than for Θ = 1/3 in a wide range of temperatures and pressures in line with experiments. In addition, for the molecular densities of SAMs corresponding to Θ = 3/7 and 1/3, the MP2-based Ch-Ch interaction potential also predicts the different chain orientations observed experimentally in SAMs of alkylthiolates on Ag(111) and Au(111). Thus, for short length alkylthiolates, a simple model based on first principles calculations that separately accounts for molecule-surface (M-S) and Ch-Ch interactions succeeds in predicting the main structural differences between the full coverage SAMs usually observed experimentally on Ag(111) and Au(111).

DNA nanofabrication by scanning near-field photolithography of oligo(ethylene glycol) terminated SAMs: Controlled scan-rate dependent switching between head group oxidation and tail group degradation

The use of scanning near-field photolithography (SNP) to fabricate DNA nanostructures is described. Two different strategies were employed to generate nanoscale features in oligo(ethylene glycol) (OEG) terminated alkylthiolate self-assembled monolayers (SAMs) on gold. At long exposure times, complete photooxidation of the SAM molecules enabled their displacement by amino-terminated thiol molecules, which were subsequently used to attach ss-DNA molecules; while short exposure times resulted in partial photochemical conversion of the terminal OEG group of the adsorbate to an aldehyde group facilitating the direct attachment of amino-DNA molecules. Arrays of DNA functionalized metal-nanoparticles were then assembled onto the ss-DNA patches through specific DNA hybridization. This methodology provides a facile approach for the assembly of bio-functionalised nanoparticles onto nanofeatures embedded in an inert background and will prove useful in biosensing applications.

Kinetics of leucine-lysine peptide adsorption and desorption at -CH3 and -COOH terminated alkylthiolate monolayers

The kinetics of adsorption and desorption of two highly asymmetrical model peptides were studied at methyl- and carboxylic acid-terminated alkylthiolate self-assembled monolayer (SAM) surfaces on gold. The model peptides were leucine-lysine (LK), α-helical (LKα14), and β-strand (LKβ15) peptides that have a well-defined secondary structure with the leucines localized on one side and the lysines on the other side. These secondary structures were previously shown to be maintained after adsorption and to control LK peptide orientation on these surfaces. The kinetics of peptide adsorption were analyzed by surface plasmon resonance as a function of peptide solution concentrations at pH 7.4. Peptide desorption was measured by rinsing with a buffer at various times along the adsorption curve. Both peptides had a saturation coverage of approximately 1 ML (monolayer) on the carboxyl SAM. Both peptides exhibited mostly irreversible binding on both surfaces, but the LKα14 peptide showed some limited reversible binding. Reversibly bound peptides could be in the second adlayer interacting only with peptides in the first layer or peptides interacting with a partially covered adsorption site and therefore not able to fully bind to the SAM surface. The near complete lack of reversible binding for LKβ15 is possibly due to strong peptide-peptide hydrogen bonding in β-sheet structures within the adsorbed layer. For a given dose of either peptide, much less peptide adsorbed on the methyl SAMs. The adsorption rate of irreversibly bound LKα14 on carboxylic acid SAMs was first-order with respect to solution concentration. Both peptides showed nucleation-like adsorption kinetics on the carboxylic acid SAM, indicating that peptide-peptide bonding is needed to stabilize the adsorbed layer. Adsorption on the methyl SAM was much lower in quantity for both peptides and seemed to require prior aggregation of the proteins in solution, at least for LKβ15.

Influence of Molecular Ordering on Electrical and Friction Properties of ω-(trans-4-Stilbene)Alkylthiol Self-Assembled Monolayers on Au (111)

The electrical and friction properties of ω-(trans-4-stilbene)alkylthiol self-assembled monolayers (SAMs) on Au(111) were investigated using atomic force microscopy (AFM) and near edge X-ray absorption fine structure spectroscopy (NEXAFS). The sample surface was uniformly covered with a molecular film consisting of very small grains. Well-ordered and flat monolayer islands were formed after the sample was heated in nitrogen at 120 °C for 1 h. While lattice resolved AFM images revealed a crystalline phase in the islands, the area between islands showed no order. The islands exhibit substantial reduction (50%) in friction, supporting the existence of good ordering. NEXAFS measurements revealed an average upright molecular orientation in the film, both before and after heating, with a narrower tilt-angle distribution for the heated fim. Conductance-AFM measurements revealed a 2 orders of magnitude higher conductivity on the ordered islands than on the disordered phase. We propose that the conductance enhancement is a result of a better π-π stacking between the trans-stilbene molecular units as a result of improved ordering in islands.

Investigating Gold Dissolution during Oxidative Desorption of Alkylthiol Self-Assembled Monolayers

The properties of alkylthiol self-assembled monolayers (SAMs) on Au have been extensively characterized in the past few decades by exploiting a one-electron reductive desorption process. To date, oxidative desorption of thiol SAMs has been relatively understudied because the Au surface can be roughened during the oxidative desorption event. In this paper we describe the oxidative desorption of alkylthiols with cyclic voltammetry and report the effect of pH, thiol functional group and chloride concentration on the peak potential for desorption. These peak potentials are compared with the visible observation of Au surface roughening and the oxidative dissolution of Au, which will be verified with atomic absorption spectroscopy. The implications of these results in terms of finding a replacement for cyanide in industrial gold leaching are discussed.

Concentration-enhanced rapid detection of human chorionic gonadotropin as a tumor marker using a nanofluidic preconcentrator

Here, we report a new method of concentration-enhanced binding kinetics for a rapid immunoassay screening test on a gold surface in a poly(dimethylsiloxane) (PDMS) microfluidic chip format. The use of alkylthiolate self-assembled monolayers on gold surfaces of a PDMS-glass microchip resulted in accelerated binding kinetics of Human chorionic gonadotropin (hCG) at an electrokinetic trapping zone. We used a PBS solution (buffer concentration ~ 150 mM), not a dibasic buffer system (~10 mM), for the dynamic preconcentrating operation and the preconcentration of cy3 labeled streptavidin onto biotinylated Au surface revealed that the binding kinetics of the protein were linearly proportional to the concentration profile of the preconcentration plug. We showed rapid detection of hCG in the clinical range with a shorten assay time of 10 min. Also, we demonstrated that the amount of sample needed were detection was decreased from ~4 mL to ~25 μL in the standard serum tests. The enhanced binding kinetics between hcG Ag-Ab via preconcentration showed good feasibility for use in a rapid immunoassay screening test.