With the rapid development of new-generation cyber–physical system (CPS) technologies, the smart operation and management of the broad bean harvesting system are enabled. This paper proposed a smart broad bean harvesting system (SBHS) and a self-adaptive control method based on CPS technologies. Firstly, the overall architecture of the SBHS is designed, which consists of four main components, namely optimal intelligent perception environment configuration, digital twin model construction, virtual simulation and real-time optimization, self-adaptive adjustment and control. Then, three key enabling technologies are discussed in detail, namely, intelligent perception environment configuration for the SBHS, digital twin model construction for the SBHS, colored Petri net (CPN)-based self-adaptive analysis and control of the harvesting system. Lastly, a proof-of-concept experiment based on a cooperative company is presented to illustrate the main work logic and advantage of the proposed SBHS. After the edge–cloud cooperative intelligent harvesting environment is configured, the CPN model for the workflow of the SBHS is created to analyze and optimize the harvesting processes. In addition, a management and control platform are developed to further illustrate the implementation of the proposed SBHS and the self-adaptive control method.