The detection of copper ion (Cu2+) and sulfide anion (S2−) is of vital importance since the abnormal level of Cu2+ or S2− can lead to many diseases. Herein, a highly sensitive and selective fluorescent sensor, 1,4,8,11-tetraazacyclotetradecane (Cyclam)-functionalized carbon dots (CCDs), has been designed, synthesized and evaluated for Cu2+ and S2−. For this nanoprobe, a specific fluorescence resonance energy transfer (FRET) process can be effectively take place between carbon dots and the surface Cu2+-Cyclam complex, the as-prepared CCDs display high sensitivity (detection limit: 100nM) and selectivity toward Cu2+ among many other metal cations (such as Mg2+, Co2+, Pb2+, Ni2+, Mn2+, Hg2+, Fe2+, Ca2+ and Zn2+) in 100% aqueous solution. Moreover, it is worth to point out that the subsequent addition of S2− can extract Cu2+ from the CCDs-Cu2+ complex and recover the fluorescence of carbon dots, the detection limit for S2− can reach to 130nM in the aqueous medium. And no statistically significant interference was observed among the other 10 anions (HCO3−, SO42−, NO3−, Cl−, CO32−, S2O32−, F−, Br−, HPO4−, ClO4−) for S2− through the study. In addition, the novel type of multifunctional fluorescent sensor has a relatively wide pH range (pH 4–10). At the same time, it exhibited remarkable longterm fluorescence stability (≥35 days) for Cu2+ detection. In addition, this nanoprobe exhibits very low cytotoxicity and can easily permeate the cell membrane and realize Cu2+ and S2− monitoring and imaging in live cells. Therefore, this novel approach can be used in various fields, such as the detection of multiplex analytes in biological applications and environment, and it will reveal great application prospects.