Little is known about the factors that drive nonstationarity and inter-individual differences in realized habitat niches and species-environment relationships. We explored this topic by developing individual habitat selection models for 14 wildcat hybrids distributed across Scotland, and assessed how differences in their predicted probabilities of occurrence were related to factors including (1) geographic distance, (2) multivariate ecological distance, (3) difference in degree of hybridization and (4) difference in sex (male vs female). We found that the individual models were exceptionally effective in predicting the habitat use and occurrence of the particular individuals on whose data they were trained, but were generally highly divergent and not transferable among individuals. We conducted a reciprocal validation approach where we calculated the AUC for each individual model, predicting the occurrence patterns of the 13 other individuals. We then fit regression and nonparametric splines to evaluate the impacts of geographical distance, ecological distance, hybridization distance and difference in the sex of individuals in the ability of individual wildcat hybrid habitat models to predict the occurrences of other individuals. We found that, of the four factors assessed, ecological distance was supported as being inversely related to ability of a model from one individual to predict occurrence of another individual. The other three factors were not strongly related to differences in reciprocal model predictive ability. This suggests that ecological differences where individual wildcat hybrids reside drive differences in their habitat selection, but that geographical distance, degree of genetic hybridization and difference in the sex of individuals are not consistently associated with differences in model prediction or reciprocal validation performance. These results highlight the effect of ecological limiting factors, and the importance of nonstationary limiting factors in determining the habitat they select, their expressed species-environment relationship and the description of their realized habitat niches.