Mass transport Complexes (MTCs) form significant sediment accumulations in continental slopes, hold key insights for natural hazard prediction and offshore oil exploration. This paper uses high-definition 3D seismic data to reconstruct the seismic geomorphology and sedimentary dynamics of MTCs, meticulously exploring the depositional systems of the Tanaraki Basin, New Zealand. It deciphers by kinematic notation, seismic faciess, quantifies megaclast morphological characteristics, in conjunction with the basal slope and channel structure development as the migration or kinematics of MTCs. Five seismic facies categories and dynamic traits—compression ridges, thrust faults, slides, grooves and slope terraces are distinguished in MTCs. Based on attributes maps and geomorphological interpretations, MTCs is segmented into four zones, showing combined effects of levée, basal slopes, and megaclast clusters on its migration. Lithological and topographical variations along these features modulate erosion properties and MTCs mobility, with base height shifts guiding local migration trajectories. The results of megaclast parameters in Zones 1 and 3 tune our understanding of stress patterns and directionality shifts, highlighting the complex dynamics at play. Notably, the differential motion triggered by levees instigates longitudinal shear zones. At critical migration disparities, MTCs fracture at these weak points, discharging pore pressure and filling fractures with fines, birthing “promontory” formations marked by low-amplitude fills. This work, therefore, establishes a groundbreaking migratory model that synthesizes the impacts of levees height, rock type variability, and megaclasts accumulation intensity, depicting a fragmented migration pattern. This study not only enriches our grasp of MTCs behavior in deep-water contexts but also furnishes a robust scientific foundation and predictive tool for gauging the hazards that MTCs may pose to underwater structures, thus carrying substantial theoretical and applied significance.